EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004827 (Gene tree)
Gene ID: 314417
Gene Symbol: Papola
Alias: LOC314417
Full Name: poly (A) polymerase alpha
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 52458 bases
Position: chr6:129609074-129661531
Accession: 1308673
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000060627	PAP_RNA-bind	PF04926.15	6.6e-25	1	1
ENSRNOP00000071393	PAP_RNA-bind	PF04926.15	7.1e-25	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000083732	-	2575	-	ENSRNOP00000071393	754 (aa)	-	A0A0G2K0C9
ENSRNOT00000091338	-	954	-	ENSRNOP00000074439	317 (aa)	-	A0A0G2K821
ENSRNOT00000064957	-	4047	XM_006240521	ENSRNOP00000060627	739 (aa)	XP_006240583	D3ZK96

Gene Model

Click here to download ENSRNOG00000004827's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004827's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000004827	Papola	98	60.162	ENSRNOG00000006261	Papolg	99	60.676

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004827	Papola	100	95.034	ENSG00000090060	PAPOLA	98	99.283	Homo_sapiens
ENSRNOG00000004827	Papola	99	95.528	ENSAMEG00000014142	PAPOLA	99	95.528	Ailuropoda_melanoleuca
ENSRNOG00000004827	Papola	99	90.231	ENSAPLG00000006645	PAPOLA	99	90.231	Anas_platyrhynchos
ENSRNOG00000004827	Papola	99	91.204	ENSACAG00000013474	PAPOLA	99	94.992	Anolis_carolinensis
ENSRNOG00000004827	Papola	72	90.824	ENSANAG00000027941	-	98	90.824	Aotus_nancymaae
ENSRNOG00000004827	Papola	100	94.765	ENSANAG00000018274	PAPOLA	99	98.162	Aotus_nancymaae
ENSRNOG00000004827	Papola	100	70.833	ENSAMXG00000018141	papola	99	84.740	Astyanax_mexicanus
ENSRNOG00000004827	Papola	100	95.805	ENSBTAG00000004054	PAPOLA	100	95.805	Bos_taurus
ENSRNOG00000004827	Papola	100	94.765	ENSCJAG00000006512	PAPOLA	99	98.162	Callithrix_jacchus
ENSRNOG00000004827	Papola	100	95.168	ENSCAFG00000017783	PAPOLA	100	95.168	Canis_familiaris
ENSRNOG00000004827	Papola	100	95.670	ENSCAFG00020011550	PAPOLA	100	95.670	Canis_lupus_dingo
ENSRNOG00000004827	Papola	100	95.399	ENSCHIG00000025004	-	100	95.399	Capra_hircus
ENSRNOG00000004827	Papola	99	94.837	ENSTSYG00000012384	PAPOLA	99	94.837	Carlito_syrichta
ENSRNOG00000004827	Papola	100	91.069	ENSCPOG00000002648	PAPOLA	100	91.069	Cavia_porcellus
ENSRNOG00000004827	Papola	100	94.899	ENSCCAG00000025120	PAPOLA	97	98.324	Cebus_capucinus
ENSRNOG00000004827	Papola	100	95.034	ENSCATG00000018815	PAPOLA	99	98.510	Cercocebus_atys
ENSRNOG00000004827	Papola	100	94.993	ENSCLAG00000016342	PAPOLA	100	94.993	Chinchilla_lanigera
ENSRNOG00000004827	Papola	100	95.034	ENSCSAG00000010516	PAPOLA	100	95.034	Chlorocebus_sabaeus
ENSRNOG00000004827	Papola	72	81.818	ENSCHOG00000001115	PAPOLA	72	81.818	Choloepus_hoffmanni
ENSRNOG00000004827	Papola	100	91.892	ENSCPBG00000024125	PAPOLA	100	91.892	Chrysemys_picta_bellii
ENSRNOG00000004827	Papola	99	89.771	ENSCANG00000000159	PAPOLA	100	89.771	Colobus_angolensis_palliatus
ENSRNOG00000004827	Papola	99	85.366	ENSCGRG00001002732	-	99	85.366	Cricetulus_griseus_chok1gshd
ENSRNOG00000004827	Papola	100	89.716	ENSCGRG00001000229	-	99	90.836	Cricetulus_griseus_chok1gshd
ENSRNOG00000004827	Papola	100	97.970	ENSCGRG00001022693	-	100	97.970	Cricetulus_griseus_chok1gshd
ENSRNOG00000004827	Papola	98	82.231	ENSCGRG00000001888	-	96	82.507	Cricetulus_griseus_crigri
ENSRNOG00000004827	Papola	100	83.085	ENSCGRG00000000257	-	100	83.085	Cricetulus_griseus_crigri
ENSRNOG00000004827	Papola	100	97.571	ENSCGRG00000003664	-	100	97.962	Cricetulus_griseus_crigri
ENSRNOG00000004827	Papola	65	53.846	ENSCSEG00000001841	-	71	53.846	Cynoglossus_semilaevis
ENSRNOG00000004827	Papola	100	69.231	ENSDARG00000009585	papola	100	69.355	Danio_rerio
ENSRNOG00000004827	Papola	66	85.890	ENSDORG00000013415	-	100	87.117	Dipodomys_ordii
ENSRNOG00000004827	Papola	99	82.225	ENSETEG00000004889	PAPOLA	100	82.225	Echinops_telfairi
ENSRNOG00000004827	Papola	100	67.839	ENSELUG00000018972	papola	100	68.602	Esox_lucius
ENSRNOG00000004827	Papola	100	96.211	ENSFCAG00000006784	PAPOLA	100	96.211	Felis_catus
ENSRNOG00000004827	Papola	99	87.105	ENSFALG00000002547	PAPOLA	98	87.105	Ficedula_albicollis
ENSRNOG00000004827	Papola	99	93.911	ENSFDAG00000010370	PAPOLA	100	93.911	Fukomys_damarensis
ENSRNOG00000004827	Papola	73	66.545	ENSGMOG00000010209	papola	100	66.910	Gadus_morhua
ENSRNOG00000004827	Papola	100	89.851	ENSGALG00000033099	PAPOLA	100	89.851	Gallus_gallus
ENSRNOG00000004827	Papola	65	53.958	ENSGACG00000006142	-	100	53.542	Gasterosteus_aculeatus
ENSRNOG00000004827	Papola	90	94.713	ENSGAGG00000020500	PAPOLA	99	94.713	Gopherus_agassizii
ENSRNOG00000004827	Papola	100	95.034	ENSGGOG00000006287	PAPOLA	100	95.034	Gorilla_gorilla
ENSRNOG00000004827	Papola	100	77.267	ENSHGLG00000007467	-	100	76.725	Heterocephalus_glaber_female
ENSRNOG00000004827	Papola	100	94.452	ENSHGLG00000007909	-	100	94.452	Heterocephalus_glaber_female
ENSRNOG00000004827	Papola	99	82.561	ENSHGLG00000017457	-	100	82.153	Heterocephalus_glaber_female
ENSRNOG00000004827	Papola	100	94.317	ENSHGLG00100017273	PAPOLA	100	94.317	Heterocephalus_glaber_male
ENSRNOG00000004827	Papola	100	68.821	ENSIPUG00000005919	papola	100	68.147	Ictalurus_punctatus
ENSRNOG00000004827	Papola	100	95.940	ENSSTOG00000011471	PAPOLA	100	95.940	Ictidomys_tridecemlineatus
ENSRNOG00000004827	Papola	99	94.701	ENSJJAG00000024340	Papola	100	94.701	Jaculus_jaculus
ENSRNOG00000004827	Papola	99	76.653	ENSLACG00000018136	PAPOLA	99	76.653	Latimeria_chalumnae
ENSRNOG00000004827	Papola	99	65.733	ENSLOCG00000008632	papola	99	66.178	Lepisosteus_oculatus
ENSRNOG00000004827	Papola	99	94.701	ENSLAFG00000000946	PAPOLA	99	94.701	Loxodonta_africana
ENSRNOG00000004827	Papola	100	95.034	ENSMFAG00000001792	PAPOLA	99	98.336	Macaca_fascicularis
ENSRNOG00000004827	Papola	100	95.034	ENSMMUG00000018610	PAPOLA	100	95.034	Macaca_mulatta
ENSRNOG00000004827	Papola	100	95.034	ENSMNEG00000043747	PAPOLA	99	97.243	Macaca_nemestrina
ENSRNOG00000004827	Papola	100	95.034	ENSMLEG00000032066	PAPOLA	100	95.034	Mandrillus_leucophaeus
ENSRNOG00000004827	Papola	84	88.889	ENSMGAG00000013228	-	100	88.889	Meleagris_gallopavo
ENSRNOG00000004827	Papola	100	97.429	ENSMAUG00000017178	Papola	100	97.429	Mesocricetus_auratus
ENSRNOG00000004827	Papola	100	96.076	ENSMICG00000010347	PAPOLA	98	98.152	Microcebus_murinus
ENSRNOG00000004827	Papola	100	97.835	ENSMOCG00000021670	Papola	100	97.835	Microtus_ochrogaster
ENSRNOG00000004827	Papola	100	94.587	ENSMODG00000012887	-	100	94.587	Monodelphis_domestica
ENSRNOG00000004827	Papola	99	80.268	ENSMODG00000001969	-	99	80.268	Monodelphis_domestica
ENSRNOG00000004827	Papola	100	98.241	MGP_CAROLIEiJ_G0018093	Papola	100	98.241	Mus_caroli
ENSRNOG00000004827	Papola	100	98.647	ENSMUSG00000021111	Papola	100	98.647	Mus_musculus
ENSRNOG00000004827	Papola	100	98.647	MGP_PahariEiJ_G0029850	Papola	100	98.758	Mus_pahari
ENSRNOG00000004827	Papola	100	98.782	MGP_SPRETEiJ_G0018943	Papola	100	99.068	Mus_spretus
ENSRNOG00000004827	Papola	100	96.346	ENSMPUG00000003054	PAPOLA	100	96.346	Mustela_putorius_furo
ENSRNOG00000004827	Papola	100	93.640	ENSMLUG00000010922	PAPOLA	100	93.640	Myotis_lucifugus
ENSRNOG00000004827	Papola	100	96.346	ENSNGAG00000022172	Papola	100	96.346	Nannospalax_galili
ENSRNOG00000004827	Papola	99	90.027	ENSNLEG00000000625	PAPOLA	100	90.027	Nomascus_leucogenys
ENSRNOG00000004827	Papola	66	83.969	ENSMEUG00000007831	-	74	83.465	Notamacropus_eugenii
ENSRNOG00000004827	Papola	97	89.875	ENSOPRG00000007625	PAPOLA	100	89.875	Ochotona_princeps
ENSRNOG00000004827	Papola	64	54.008	ENSONIG00000001062	-	96	54.008	Oreochromis_niloticus
ENSRNOG00000004827	Papola	99	89.824	ENSOANG00000013812	PAPOLA	99	90.353	Ornithorhynchus_anatinus
ENSRNOG00000004827	Papola	99	92.673	ENSOCUG00000011531	PAPOLA	99	92.673	Oryctolagus_cuniculus
ENSRNOG00000004827	Papola	100	95.946	ENSOGAG00000004611	PAPOLA	100	95.946	Otolemur_garnettii
ENSRNOG00000004827	Papola	100	95.940	ENSOARG00000016579	-	100	95.940	Ovis_aries
ENSRNOG00000004827	Papola	100	95.034	ENSPPAG00000030505	PAPOLA	100	95.034	Pan_paniscus
ENSRNOG00000004827	Papola	100	96.211	ENSPPRG00000008616	PAPOLA	100	96.211	Panthera_pardus
ENSRNOG00000004827	Papola	99	96.196	ENSPTIG00000018852	PAPOLA	99	96.196	Panthera_tigris_altaica
ENSRNOG00000004827	Papola	100	95.034	ENSPTRG00000006704	PAPOLA	100	95.034	Pan_troglodytes
ENSRNOG00000004827	Papola	100	95.034	ENSPANG00000025582	PAPOLA	98	98.510	Papio_anubis
ENSRNOG00000004827	Papola	100	69.020	ENSPKIG00000014471	papola	100	70.065	Paramormyrops_kingsleyae
ENSRNOG00000004827	Papola	100	92.432	ENSPSIG00000014157	PAPOLA	87	92.027	Pelodiscus_sinensis
ENSRNOG00000004827	Papola	100	98.106	ENSPEMG00000000043	Papola	100	98.106	Peromyscus_maniculatus_bairdii
ENSRNOG00000004827	Papola	100	94.324	ENSPCIG00000013234	PAPOLA	100	95.633	Phascolarctos_cinereus
ENSRNOG00000004827	Papola	100	92.617	ENSPPYG00000006128	PAPOLA	100	92.617	Pongo_abelii
ENSRNOG00000004827	Papola	89	90.701	ENSPCAG00000004199	PAPOLA	100	90.701	Procavia_capensis
ENSRNOG00000004827	Papola	99	92.673	ENSPCOG00000022117	PAPOLA	99	92.799	Propithecus_coquereli
ENSRNOG00000004827	Papola	100	94.587	ENSPVAG00000013925	PAPOLA	100	94.587	Pteropus_vampyrus
ENSRNOG00000004827	Papola	100	69.652	ENSPNAG00000010467	papola	100	69.786	Pygocentrus_nattereri
ENSRNOG00000004827	Papola	99	91.723	ENSRBIG00000038490	PAPOLA	97	97.928	Rhinopithecus_bieti
ENSRNOG00000004827	Papola	100	95.034	ENSRROG00000025545	PAPOLA	100	95.034	Rhinopithecus_roxellana
ENSRNOG00000004827	Papola	99	94.744	ENSSBOG00000024061	PAPOLA	97	98.305	Saimiri_boliviensis_boliviensis
ENSRNOG00000004827	Papola	99	94.022	ENSSHAG00000015211	PAPOLA	99	94.022	Sarcophilus_harrisii
ENSRNOG00000004827	Papola	100	70.479	ENSSFOG00015004431	papola	99	84.629	Scleropages_formosus
ENSRNOG00000004827	Papola	65	57.645	ENSSDUG00000018247	-	72	57.645	Seriola_dumerili
ENSRNOG00000004827	Papola	100	91.757	ENSSPUG00000005835	PAPOLA	100	91.757	Sphenodon_punctatus
ENSRNOG00000004827	Papola	100	95.805	ENSSSCG00000002505	-	100	95.805	Sus_scrofa
ENSRNOG00000004827	Papola	99	89.946	ENSTGUG00000012687	PAPOLA	100	89.824	Taeniopygia_guttata
ENSRNOG00000004827	Papola	75	87.772	ENSTBEG00000000194	PAPOLA	75	87.772	Tupaia_belangeri
ENSRNOG00000004827	Papola	80	89.147	ENSTTRG00000005717	PAPOLA	80	89.147	Tursiops_truncatus
ENSRNOG00000004827	Papola	57	98.815	ENSUAMG00000025737	PAPOLA	98	98.815	Ursus_americanus
ENSRNOG00000004827	Papola	99	95.245	ENSVPAG00000006464	PAPOLA	100	95.245	Vicugna_pacos
ENSRNOG00000004827	Papola	100	95.940	ENSVVUG00000028340	PAPOLA	100	95.940	Vulpes_vulpes
ENSRNOG00000004827	Papola	100	83.356	ENSXETG00000013949	papola	100	83.221	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004652	polynucleotide adenylyltransferase activity	21873635.	IBA	Function
GO:0004652	polynucleotide adenylyltransferase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0031440	regulation of mRNA 3'-end processing	-	IEA	Process
GO:0031440	regulation of mRNA 3'-end processing	-	ISO	Process
GO:0043631	RNA polyadenylation	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function