EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004962 (Gene tree)
Gene ID: 170820
Gene Symbol: Prdm4
Alias: SC-1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 25148 bases
Position: chr7:23960378-23985525
Accession: 619929
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000006886	zf-C2H2	PF00096.26	1.8e-20	1	2
ENSRNOP00000006886	zf-C2H2	PF00096.26	1.8e-20	2	2
ENSRNOP00000006886	zf-met	PF12874.7	0.00012	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000006886	-	2689	XM_006241160	ENSRNOP00000006886	798 (aa)	XP_006241222	F1LPR7

Gene Model

Click here to download ENSRNOG00000004962's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004962	Prdm4	100	93.734	ENSG00000110851	PRDM4	99	93.985	Homo_sapiens
ENSRNOG00000004962	Prdm4	100	93.867	ENSAMEG00000016174	PRDM4	99	93.992	Ailuropoda_melanoleuca
ENSRNOG00000004962	Prdm4	100	85.840	ENSAPLG00000009846	PRDM4	99	85.714	Anas_platyrhynchos
ENSRNOG00000004962	Prdm4	100	93.609	ENSANAG00000024800	PRDM4	99	92.857	Aotus_nancymaae
ENSRNOG00000004962	Prdm4	100	93.860	ENSBTAG00000012999	PRDM4	99	94.236	Bos_taurus
ENSRNOG00000004962	Prdm4	100	93.358	ENSCJAG00000015261	PRDM4	99	93.609	Callithrix_jacchus
ENSRNOG00000004962	Prdm4	100	93.609	ENSCAFG00000001788	PRDM4	99	93.985	Canis_familiaris
ENSRNOG00000004962	Prdm4	100	93.609	ENSCAFG00020004916	PRDM4	99	93.985	Canis_lupus_dingo
ENSRNOG00000004962	Prdm4	100	93.609	ENSCHIG00000019409	PRDM4	99	93.985	Capra_hircus
ENSRNOG00000004962	Prdm4	100	93.609	ENSTSYG00000009248	PRDM4	99	93.985	Carlito_syrichta
ENSRNOG00000004962	Prdm4	100	89.237	ENSCAPG00000013937	PRDM4	99	89.237	Cavia_aperea
ENSRNOG00000004962	Prdm4	100	88.696	ENSCPOG00000022385	PRDM4	100	88.696	Cavia_porcellus
ENSRNOG00000004962	Prdm4	100	93.734	ENSCCAG00000036033	PRDM4	99	93.985	Cebus_capucinus
ENSRNOG00000004962	Prdm4	100	93.358	ENSCATG00000044797	PRDM4	99	93.609	Cercocebus_atys
ENSRNOG00000004962	Prdm4	100	90.062	ENSCLAG00000007545	PRDM4	100	90.683	Chinchilla_lanigera
ENSRNOG00000004962	Prdm4	100	93.609	ENSCSAG00000002896	PRDM4	99	93.860	Chlorocebus_sabaeus
ENSRNOG00000004962	Prdm4	71	96.226	ENSCHOG00000001744	PRDM4	85	96.226	Choloepus_hoffmanni
ENSRNOG00000004962	Prdm4	100	86.090	ENSCPBG00000023187	PRDM4	100	86.466	Chrysemys_picta_bellii
ENSRNOG00000004962	Prdm4	100	93.484	ENSCANG00000021804	PRDM4	99	93.734	Colobus_angolensis_palliatus
ENSRNOG00000004962	Prdm4	100	93.789	ENSCGRG00001015102	-	100	93.789	Cricetulus_griseus_chok1gshd
ENSRNOG00000004962	Prdm4	96	93.557	ENSCGRG00000004044	-	100	93.557	Cricetulus_griseus_crigri
ENSRNOG00000004962	Prdm4	100	93.233	ENSDNOG00000032478	PRDM4	99	94.957	Dasypus_novemcinctus
ENSRNOG00000004962	Prdm4	100	79.449	ENSDORG00000015081	-	100	79.699	Dipodomys_ordii
ENSRNOG00000004962	Prdm4	96	45.238	ENSEBUG00000003775	prdm4	99	45.643	Eptatretus_burgeri
ENSRNOG00000004962	Prdm4	100	93.985	ENSECAG00000015423	PRDM4	99	94.384	Equus_caballus
ENSRNOG00000004962	Prdm4	94	91.223	ENSEEUG00000006569	PRDM4	99	91.223	Erinaceus_europaeus
ENSRNOG00000004962	Prdm4	95	61.905	ENSELUG00000015265	prdm4	94	61.776	Esox_lucius
ENSRNOG00000004962	Prdm4	100	93.860	ENSFCAG00000022478	PRDM4	99	94.236	Felis_catus
ENSRNOG00000004962	Prdm4	100	85.965	ENSFALG00000013342	PRDM4	100	85.965	Ficedula_albicollis
ENSRNOG00000004962	Prdm4	100	85.500	ENSGALG00000012619	PRDM4	99	85.375	Gallus_gallus
ENSRNOG00000004962	Prdm4	100	85.714	ENSGAGG00000002763	PRDM4	95	86.090	Gopherus_agassizii
ENSRNOG00000004962	Prdm4	100	93.609	ENSGGOG00000001244	PRDM4	99	93.860	Gorilla_gorilla
ENSRNOG00000004962	Prdm4	100	92.105	ENSHGLG00000004590	PRDM4	98	91.980	Heterocephalus_glaber_female
ENSRNOG00000004962	Prdm4	100	91.067	ENSHGLG00100007464	PRDM4	100	90.943	Heterocephalus_glaber_male
ENSRNOG00000004962	Prdm4	95	61.010	ENSIPUG00000024162	prdm4	94	60.751	Ictalurus_punctatus
ENSRNOG00000004962	Prdm4	100	93.860	ENSSTOG00000016168	PRDM4	99	93.985	Ictidomys_tridecemlineatus
ENSRNOG00000004962	Prdm4	100	90.226	ENSJJAG00000022448	-	95	93.496	Jaculus_jaculus
ENSRNOG00000004962	Prdm4	100	71.040	ENSLACG00000007452	PRDM4	99	71.535	Latimeria_chalumnae
ENSRNOG00000004962	Prdm4	78	42.480	ENSLOCG00000017092	prdm4	100	53.680	Lepisosteus_oculatus
ENSRNOG00000004962	Prdm4	94	95.119	ENSLAFG00000001483	PRDM4	97	95.033	Loxodonta_africana
ENSRNOG00000004962	Prdm4	100	93.734	ENSMFAG00000041862	PRDM4	99	93.985	Macaca_fascicularis
ENSRNOG00000004962	Prdm4	100	93.734	ENSMMUG00000015550	PRDM4	99	93.985	Macaca_mulatta
ENSRNOG00000004962	Prdm4	100	93.484	ENSMNEG00000032319	PRDM4	99	93.734	Macaca_nemestrina
ENSRNOG00000004962	Prdm4	100	93.609	ENSMLEG00000039607	PRDM4	99	93.860	Mandrillus_leucophaeus
ENSRNOG00000004962	Prdm4	100	77.778	ENSMGAG00000012815	PRDM4	100	77.653	Meleagris_gallopavo
ENSRNOG00000004962	Prdm4	100	92.857	ENSMICG00000007807	PRDM4	99	93.236	Microcebus_murinus
ENSRNOG00000004962	Prdm4	100	94.236	ENSMOCG00000000753	Prdm4	99	94.361	Microtus_ochrogaster
ENSRNOG00000004962	Prdm4	100	96.241	ENSMUSG00000035529	Prdm4	100	96.241	Mus_musculus
ENSRNOG00000004962	Prdm4	100	95.238	MGP_PahariEiJ_G0031398	Prdm4	100	95.614	Mus_pahari
ENSRNOG00000004962	Prdm4	100	96.742	MGP_SPRETEiJ_G0016505	Prdm4	100	96.742	Mus_spretus
ENSRNOG00000004962	Prdm4	100	87.656	ENSMPUG00000012238	PRDM4	99	87.282	Mustela_putorius_furo
ENSRNOG00000004962	Prdm4	100	93.358	ENSMLUG00000000767	PRDM4	99	93.734	Myotis_lucifugus
ENSRNOG00000004962	Prdm4	100	94.737	ENSNGAG00000018627	Prdm4	100	95.113	Nannospalax_galili
ENSRNOG00000004962	Prdm4	100	93.609	ENSNLEG00000006748	PRDM4	99	93.860	Nomascus_leucogenys
ENSRNOG00000004962	Prdm4	89	86.885	ENSMEUG00000004495	PRDM4	89	86.183	Notamacropus_eugenii
ENSRNOG00000004962	Prdm4	89	92.183	ENSOPRG00000010192	PRDM4	89	92.285	Ochotona_princeps
ENSRNOG00000004962	Prdm4	100	88.471	ENSODEG00000014750	PRDM4	99	88.471	Octodon_degus
ENSRNOG00000004962	Prdm4	100	88.722	ENSOANG00000005526	PRDM4	99	88.471	Ornithorhynchus_anatinus
ENSRNOG00000004962	Prdm4	93	95.279	ENSOCUG00000012859	PRDM4	96	95.279	Oryctolagus_cuniculus
ENSRNOG00000004962	Prdm4	100	93.734	ENSOGAG00000011945	PRDM4	100	93.860	Otolemur_garnettii
ENSRNOG00000004962	Prdm4	100	93.484	ENSOARG00000017955	PRDM4	99	93.860	Ovis_aries
ENSRNOG00000004962	Prdm4	100	93.985	ENSPPAG00000038438	PRDM4	99	94.236	Pan_paniscus
ENSRNOG00000004962	Prdm4	100	93.860	ENSPPRG00000004144	PRDM4	99	94.236	Panthera_pardus
ENSRNOG00000004962	Prdm4	100	93.860	ENSPTIG00000005847	PRDM4	99	94.236	Panthera_tigris_altaica
ENSRNOG00000004962	Prdm4	100	93.734	ENSPTRG00000005400	PRDM4	99	93.985	Pan_troglodytes
ENSRNOG00000004962	Prdm4	100	93.734	ENSPANG00000022084	PRDM4	99	93.985	Papio_anubis
ENSRNOG00000004962	Prdm4	99	59.953	ENSPKIG00000000875	prdm4	99	59.976	Paramormyrops_kingsleyae
ENSRNOG00000004962	Prdm4	92	78.450	ENSPSIG00000012066	PRDM4	100	79.017	Pelodiscus_sinensis
ENSRNOG00000004962	Prdm4	100	96.366	ENSPEMG00000014598	Prdm4	100	96.366	Peromyscus_maniculatus_bairdii
ENSRNOG00000004962	Prdm4	100	87.016	ENSPCIG00000009471	PRDM4	99	86.642	Phascolarctos_cinereus
ENSRNOG00000004962	Prdm4	100	93.609	ENSPPYG00000004913	PRDM4	99	93.860	Pongo_abelii
ENSRNOG00000004962	Prdm4	83	91.922	ENSPCAG00000009987	PRDM4	83	92.407	Procavia_capensis
ENSRNOG00000004962	Prdm4	100	92.732	ENSPCOG00000021060	PRDM4	99	93.108	Propithecus_coquereli
ENSRNOG00000004962	Prdm4	100	94.110	ENSPVAG00000001596	PRDM4	99	94.110	Pteropus_vampyrus
ENSRNOG00000004962	Prdm4	100	93.484	ENSRBIG00000035488	PRDM4	99	93.734	Rhinopithecus_bieti
ENSRNOG00000004962	Prdm4	100	93.609	ENSRROG00000012779	PRDM4	99	93.860	Rhinopithecus_roxellana
ENSRNOG00000004962	Prdm4	100	93.860	ENSSBOG00000000403	PRDM4	99	94.110	Saimiri_boliviensis_boliviensis
ENSRNOG00000004962	Prdm4	99	63.177	ENSSFOG00015023358	prdm4	98	63.054	Scleropages_formosus
ENSRNOG00000004962	Prdm4	100	93.734	ENSSSCG00000000160	PRDM4	99	94.110	Sus_scrofa
ENSRNOG00000004962	Prdm4	100	86.216	ENSTGUG00000010962	-	99	86.216	Taeniopygia_guttata
ENSRNOG00000004962	Prdm4	73	89.078	ENSTBEG00000001732	PRDM4	84	89.078	Tupaia_belangeri
ENSRNOG00000004962	Prdm4	100	94.110	ENSTTRG00000011056	PRDM4	99	94.486	Tursiops_truncatus
ENSRNOG00000004962	Prdm4	100	93.734	ENSUAMG00000022796	PRDM4	99	94.110	Ursus_americanus
ENSRNOG00000004962	Prdm4	100	93.734	ENSUMAG00000017231	PRDM4	99	94.110	Ursus_maritimus
ENSRNOG00000004962	Prdm4	100	93.734	ENSVPAG00000002215	PRDM4	100	94.110	Vicugna_pacos
ENSRNOG00000004962	Prdm4	100	93.609	ENSVVUG00000023397	PRDM4	99	93.985	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	IEA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005123	death receptor binding	10485890.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	10485890.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005737	cytoplasm	10485890.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	TAS	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0010629	negative regulation of gene expression	23048031.	IMP	Process
GO:0030308	negative regulation of cell growth	10485890.	IDA	Process
GO:0031490	chromatin DNA binding	21873635.	IBA	Function
GO:0031670	cellular response to nutrient	10485890.	IEP	Process
GO:0032259	methylation	-	IEA	Process
GO:0035097	histone methyltransferase complex	-	IEA	Component
GO:0035097	histone methyltransferase complex	-	ISO	Component
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0071363	cellular response to growth factor stimulus	10485890.	IEP	Process
GO:1990226	histone methyltransferase binding	21873635.	IBA	Function
GO:1990226	histone methyltransferase binding	-	IEA	Function
GO:1990226	histone methyltransferase binding	-	ISO	Function
GO:2000177	regulation of neural precursor cell proliferation	23048031.	IMP	Process
GO:2000736	regulation of stem cell differentiation	23048031.	IMP	Process