EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004992 (Gene tree)
Gene ID: 81754
Gene Symbol: Rab1a
Alias: Ac2-048|Rab1|Rab1r
Full Name: RAB1A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 25939 bases
Position: chr14:104475082-104501020
Accession: 619736
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000045598	GTP_EFTU	PF00009.27	1.6e-07	1	1
ENSRNOP00000073493	MMR_HSR1	PF01926.23	1.5e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000084481	-	1410	-	ENSRNOP00000073493	205 (aa)	-	Q6NYB7
ENSRNOT00000021040	-	903	-	ENSRNOP00000045598	300 (aa)	-	E9PU16
ENSRNOT00000078710	-	994	-	ENSRNOP00000072088	323 (aa)	-	A0A0G2K235

Gene Model

Click here to download ENSRNOG00000004992's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05134	Legionellosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004992's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000004992	Rab1a	95	43.367	ENSRNOG00000006130	Rab5b	90	43.367
ENSRNOG00000004992	Rab1a	95	38.776	ENSRNOG00000005762	Rab22a	97	38.776
ENSRNOG00000004992	Rab1a	77	40.373	ENSRNOG00000023375	Rab34	63	40.373
ENSRNOG00000004992	Rab1a	95	38.776	ENSRNOG00000042189	Rab31	97	38.776
ENSRNOG00000004992	Rab1a	88	47.514	ENSRNOG00000005963	Rab2a	100	44.660
ENSRNOG00000004992	Rab1a	80	35.928	ENSRNOG00000014060	Mras	80	35.928
ENSRNOG00000004992	Rab1a	82	30.178	ENSRNOG00000042470	Eras	71	30.178
ENSRNOG00000004992	Rab1a	58	34.454	ENSRNOG00000005988	Arl8a	62	34.454
ENSRNOG00000004992	Rab1a	57	30.081	ENSRNOG00000057515	AABR07046136.1	63	30.081
ENSRNOG00000004992	Rab1a	80	38.415	ENSRNOG00000023079	Nras	86	38.415
ENSRNOG00000004992	Rab1a	95	43.590	ENSRNOG00000018568	Rab5c	89	43.590
ENSRNOG00000004992	Rab1a	99	92.079	ENSRNOG00000050510	LOC102555167	100	92.079
ENSRNOG00000004992	Rab1a	82	45.833	ENSRNOG00000023640	Rab25	79	45.833
ENSRNOG00000004992	Rab1a	80	38.415	ENSRNOG00000009338	Kras	93	36.723
ENSRNOG00000004992	Rab1a	73	32.450	ENSRNOG00000050578	Rheb	82	32.450
ENSRNOG00000004992	Rab1a	84	35.028	ENSRNOG00000016611	Hras	93	35.028
ENSRNOG00000004992	Rab1a	57	33.058	ENSRNOG00000021010	Arl2	65	33.058
ENSRNOG00000004992	Rab1a	81	34.337	ENSRNOG00000012629	Rab23	70	34.337
ENSRNOG00000004992	Rab1a	83	43.429	ENSRNOG00000013035	Rab33b	76	43.429
ENSRNOG00000004992	Rab1a	100	45.581	ENSRNOG00000007648	Rab11b	99	45.581
ENSRNOG00000004992	Rab1a	87	37.158	ENSRNOG00000012247	Rab7a	97	37.158
ENSRNOG00000004992	Rab1a	57	31.933	ENSRNOG00000004282	Arl4a	59	31.933
ENSRNOG00000004992	Rab1a	62	33.333	ENSRNOG00000049827	Arl14	65	33.333
ENSRNOG00000004992	Rab1a	81	50.602	ENSRNOG00000010224	Rab30	82	50.602
ENSRNOG00000004992	Rab1a	99	44.554	ENSRNOG00000018901	Rab14	93	44.554
ENSRNOG00000004992	Rab1a	76	39.623	ENSRNOG00000047960	Rab9b	79	39.623
ENSRNOG00000004992	Rab1a	94	38.384	ENSRNOG00000018176	Rab6a	94	38.384
ENSRNOG00000004992	Rab1a	69	30.201	ENSRNOG00000020770	Arl4d	73	30.201
ENSRNOG00000004992	Rab1a	95	46.429	ENSRNOG00000018972	Rab18	93	46.429
ENSRNOG00000004992	Rab1a	80	50.909	ENSRNOG00000007364	Rab15	78	50.909
ENSRNOG00000004992	Rab1a	68	30.496	ENSRNOG00000019973	Arl3	70	30.496
ENSRNOG00000004992	Rab1a	93	43.367	ENSRNOG00000006698	Rab33a	82	43.367
ENSRNOG00000004992	Rab1a	95	34.123	ENSRNOG00000001311	Rab36	79	34.123
ENSRNOG00000004992	Rab1a	76	38.994	ENSRNOG00000030443	Rab9a	79	38.994
ENSRNOG00000004992	Rab1a	96	51.777	ENSRNOG00000016733	Rab13	97	51.777
ENSRNOG00000004992	Rab1a	94	36.410	ENSRNOG00000009198	Rab6b	94	36.410
ENSRNOG00000004992	Rab1a	85	52.299	ENSRNOG00000011302	Rab11a	81	52.299
ENSRNOG00000004992	Rab1a	82	30.178	ENSRNOG00000048396	LOC108348138	71	30.178
ENSRNOG00000004992	Rab1a	99	53.960	ENSRNOG00000022014	Rab35	100	53.960
ENSRNOG00000004992	Rab1a	81	30.168	ENSRNOG00000000956	Rasl11a	74	30.168
ENSRNOG00000004992	Rab1a	90	48.108	ENSRNOG00000012488	Rab2b	86	48.108
ENSRNOG00000004992	Rab1a	75	37.580	ENSRNOG00000013947	Rabl2	60	37.580
ENSRNOG00000004992	Rab1a	81	49.704	ENSRNOG00000019295	Rab12	65	51.250
ENSRNOG00000004992	Rab1a	57	32.203	ENSRNOG00000055860	Arl8b	61	32.203

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004992	Rab1a	100	100.000	ENSG00000138069	RAB1A	100	100.000	Homo_sapiens
ENSRNOG00000004992	Rab1a	99	95.545	ENSAPOG00000008143	-	100	95.545	Acanthochromis_polyacanthus
ENSRNOG00000004992	Rab1a	100	100.000	ENSAMEG00000001127	RAB1A	100	100.000	Ailuropoda_melanoleuca
ENSRNOG00000004992	Rab1a	99	95.545	ENSAOCG00000020606	-	100	95.545	Amphiprion_ocellaris
ENSRNOG00000004992	Rab1a	99	95.545	ENSAPEG00000022488	-	100	95.545	Amphiprion_percula
ENSRNOG00000004992	Rab1a	100	100.000	ENSANAG00000020929	RAB1A	100	100.000	Aotus_nancymaae
ENSRNOG00000004992	Rab1a	99	96.040	ENSACLG00000003326	-	100	96.040	Astatotilapia_calliptera
ENSRNOG00000004992	Rab1a	99	94.554	ENSAMXG00000034850	-	100	94.554	Astyanax_mexicanus
ENSRNOG00000004992	Rab1a	100	100.000	ENSBTAG00000016720	RAB1A	100	100.000	Bos_taurus
ENSRNOG00000004992	Rab1a	100	100.000	ENSCJAG00000046275	RAB1A	100	100.000	Callithrix_jacchus
ENSRNOG00000004992	Rab1a	100	100.000	ENSCAFG00000003187	RAB1A	100	100.000	Canis_familiaris
ENSRNOG00000004992	Rab1a	100	100.000	ENSCAFG00020026971	RAB1A	100	100.000	Canis_lupus_dingo
ENSRNOG00000004992	Rab1a	96	100.000	ENSCHIG00000014060	RAB1A	96	100.000	Capra_hircus
ENSRNOG00000004992	Rab1a	100	98.049	ENSTSYG00000005996	RAB1A	100	100.000	Carlito_syrichta
ENSRNOG00000004992	Rab1a	100	100.000	ENSCPOG00000015437	RAB1A	100	100.000	Cavia_porcellus
ENSRNOG00000004992	Rab1a	100	100.000	ENSCCAG00000021869	RAB1A	100	100.000	Cebus_capucinus
ENSRNOG00000004992	Rab1a	100	100.000	ENSCATG00000030853	RAB1A	100	100.000	Cercocebus_atys
ENSRNOG00000004992	Rab1a	100	100.000	ENSCLAG00000014766	RAB1A	100	100.000	Chinchilla_lanigera
ENSRNOG00000004992	Rab1a	100	99.512	ENSCPBG00000013243	RAB1A	100	99.512	Chrysemys_picta_bellii
ENSRNOG00000004992	Rab1a	100	97.561	ENSCANG00000035916	RAB1A	100	97.561	Colobus_angolensis_palliatus
ENSRNOG00000004992	Rab1a	100	100.000	ENSCGRG00001012691	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000004992	Rab1a	100	100.000	ENSCGRG00000008456	-	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000004992	Rab1a	100	100.000	ENSDNOG00000018236	RAB1A	100	100.000	Dasypus_novemcinctus
ENSRNOG00000004992	Rab1a	100	100.000	ENSDORG00000028628	-	100	100.000	Dipodomys_ordii
ENSRNOG00000004992	Rab1a	100	84.466	FBgn0285937	Rab1	100	84.466	Drosophila_melanogaster
ENSRNOG00000004992	Rab1a	99	100.000	ENSETEG00000002205	RAB1A	100	100.000	Echinops_telfairi
ENSRNOG00000004992	Rab1a	100	100.000	ENSEASG00005007298	RAB1A	100	100.000	Equus_asinus_asinus
ENSRNOG00000004992	Rab1a	100	100.000	ENSECAG00000009926	RAB1A	100	100.000	Equus_caballus
ENSRNOG00000004992	Rab1a	99	100.000	ENSEEUG00000011721	RAB1A	100	100.000	Erinaceus_europaeus
ENSRNOG00000004992	Rab1a	99	95.588	ENSELUG00000012166	RAB1A	96	95.588	Esox_lucius
ENSRNOG00000004992	Rab1a	100	100.000	ENSFCAG00000002536	RAB1A	100	100.000	Felis_catus
ENSRNOG00000004992	Rab1a	99	97.537	ENSFALG00000013624	RAB1A	99	97.537	Ficedula_albicollis
ENSRNOG00000004992	Rab1a	100	100.000	ENSFDAG00000019505	-	100	100.000	Fukomys_damarensis
ENSRNOG00000004992	Rab1a	99	94.554	ENSFHEG00000014414	-	100	94.554	Fundulus_heteroclitus
ENSRNOG00000004992	Rab1a	100	99.512	ENSGALG00000031582	RAB1A	100	99.512	Gallus_gallus
ENSRNOG00000004992	Rab1a	99	94.554	ENSGAFG00000000918	-	100	94.554	Gambusia_affinis
ENSRNOG00000004992	Rab1a	100	99.512	ENSGAGG00000006802	RAB1A	100	99.512	Gopherus_agassizii
ENSRNOG00000004992	Rab1a	100	100.000	ENSGGOG00000026603	RAB1A	100	100.000	Gorilla_gorilla
ENSRNOG00000004992	Rab1a	100	100.000	ENSHGLG00000013585	RAB1A	100	100.000	Heterocephalus_glaber_female
ENSRNOG00000004992	Rab1a	99	97.549	ENSHGLG00100007994	RAB1A	99	97.549	Heterocephalus_glaber_male
ENSRNOG00000004992	Rab1a	100	100.000	ENSSTOG00000020693	-	100	100.000	Ictidomys_tridecemlineatus
ENSRNOG00000004992	Rab1a	96	100.000	ENSJJAG00000014396	Rab1a	100	100.000	Jaculus_jaculus
ENSRNOG00000004992	Rab1a	96	95.431	ENSKMAG00000014038	-	93	95.431	Kryptolebias_marmoratus
ENSRNOG00000004992	Rab1a	99	95.050	ENSLBEG00000028426	RAB1A	100	95.050	Labrus_bergylta
ENSRNOG00000004992	Rab1a	100	98.537	ENSLACG00000012869	RAB1A	100	98.537	Latimeria_chalumnae
ENSRNOG00000004992	Rab1a	100	100.000	ENSLAFG00000016666	RAB1A	100	100.000	Loxodonta_africana
ENSRNOG00000004992	Rab1a	100	100.000	ENSMFAG00000046246	RAB1A	100	100.000	Macaca_fascicularis
ENSRNOG00000004992	Rab1a	96	100.000	ENSMMUG00000021721	RAB1A	91	100.000	Macaca_mulatta
ENSRNOG00000004992	Rab1a	95	99.485	ENSMNEG00000028414	-	97	99.485	Macaca_nemestrina
ENSRNOG00000004992	Rab1a	100	100.000	ENSMLEG00000042535	RAB1A	100	100.000	Mandrillus_leucophaeus
ENSRNOG00000004992	Rab1a	99	96.040	ENSMZEG00005013959	-	100	96.040	Maylandia_zebra
ENSRNOG00000004992	Rab1a	96	99.492	ENSMGAG00000004611	RAB1A	98	99.492	Meleagris_gallopavo
ENSRNOG00000004992	Rab1a	100	99.512	ENSMAUG00000012156	Rab1a	100	99.512	Mesocricetus_auratus
ENSRNOG00000004992	Rab1a	100	100.000	ENSMICG00000012587	RAB1A	100	100.000	Microcebus_murinus
ENSRNOG00000004992	Rab1a	100	99.512	ENSMOCG00000017022	Rab1a	100	99.512	Microtus_ochrogaster
ENSRNOG00000004992	Rab1a	99	93.564	ENSMMOG00000018709	RAB1A	100	93.564	Mola_mola
ENSRNOG00000004992	Rab1a	100	99.512	ENSMODG00000003340	RAB1A	100	99.512	Monodelphis_domestica
ENSRNOG00000004992	Rab1a	100	100.000	MGP_CAROLIEiJ_G0016115	Rab1a	100	100.000	Mus_caroli
ENSRNOG00000004992	Rab1a	100	100.000	ENSMUSG00000020149	Rab1a	100	100.000	Mus_musculus
ENSRNOG00000004992	Rab1a	100	100.000	MGP_PahariEiJ_G0016776	Rab1a	100	100.000	Mus_pahari
ENSRNOG00000004992	Rab1a	100	100.000	MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	Mus_spretus
ENSRNOG00000004992	Rab1a	100	100.000	ENSMPUG00000006139	RAB1A	82	100.000	Mustela_putorius_furo
ENSRNOG00000004992	Rab1a	100	100.000	ENSMLUG00000009489	RAB1A	100	100.000	Myotis_lucifugus
ENSRNOG00000004992	Rab1a	100	100.000	ENSNGAG00000005838	Rab1a	100	100.000	Nannospalax_galili
ENSRNOG00000004992	Rab1a	99	96.040	ENSNBRG00000020492	-	100	96.040	Neolamprologus_brichardi
ENSRNOG00000004992	Rab1a	96	100.000	ENSOPRG00000006595	RAB1A	100	100.000	Ochotona_princeps
ENSRNOG00000004992	Rab1a	94	100.000	ENSODEG00000011248	-	96	100.000	Octodon_degus
ENSRNOG00000004992	Rab1a	99	93.627	ENSONIG00000006819	-	100	93.627	Oreochromis_niloticus
ENSRNOG00000004992	Rab1a	100	99.512	ENSOANG00000012438	RAB1A	100	99.512	Ornithorhynchus_anatinus
ENSRNOG00000004992	Rab1a	100	100.000	ENSOCUG00000017003	RAB1A	100	100.000	Oryctolagus_cuniculus
ENSRNOG00000004992	Rab1a	100	100.000	ENSOGAG00000026181	RAB1A	100	100.000	Otolemur_garnettii
ENSRNOG00000004992	Rab1a	96	100.000	ENSOARG00000019997	RAB1A	97	100.000	Ovis_aries
ENSRNOG00000004992	Rab1a	99	100.000	ENSPPAG00000030253	RAB1A	100	100.000	Pan_paniscus
ENSRNOG00000004992	Rab1a	100	100.000	ENSPPRG00000025077	RAB1A	100	100.000	Panthera_pardus
ENSRNOG00000004992	Rab1a	96	100.000	ENSPTIG00000013471	RAB1A	97	100.000	Panthera_tigris_altaica
ENSRNOG00000004992	Rab1a	100	100.000	ENSPTRG00000011989	RAB1A	100	100.000	Pan_troglodytes
ENSRNOG00000004992	Rab1a	100	100.000	ENSPANG00000010485	RAB1A	100	100.000	Papio_anubis
ENSRNOG00000004992	Rab1a	99	96.552	ENSPSIG00000008028	RAB1A	99	96.552	Pelodiscus_sinensis
ENSRNOG00000004992	Rab1a	99	95.588	ENSPMGG00000021015	-	99	95.588	Periophthalmus_magnuspinnatus
ENSRNOG00000004992	Rab1a	100	100.000	ENSPEMG00000009340	Rab1a	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000004992	Rab1a	100	99.512	ENSPCIG00000023212	RAB1A	100	99.512	Phascolarctos_cinereus
ENSRNOG00000004992	Rab1a	99	93.137	ENSPFOG00000000498	-	99	93.137	Poecilia_formosa
ENSRNOG00000004992	Rab1a	99	94.059	ENSPLAG00000015592	-	100	94.059	Poecilia_latipinna
ENSRNOG00000004992	Rab1a	99	94.059	ENSPMEG00000005288	-	100	94.059	Poecilia_mexicana
ENSRNOG00000004992	Rab1a	100	100.000	ENSPPYG00000012360	RAB1A	100	100.000	Pongo_abelii
ENSRNOG00000004992	Rab1a	100	100.000	ENSPCOG00000017244	RAB1A	100	100.000	Propithecus_coquereli
ENSRNOG00000004992	Rab1a	99	96.040	ENSPNYG00000015841	-	100	96.040	Pundamilia_nyererei
ENSRNOG00000004992	Rab1a	100	100.000	ENSSBOG00000023732	RAB1A	100	100.000	Saimiri_boliviensis_boliviensis
ENSRNOG00000004992	Rab1a	98	98.010	ENSSHAG00000003597	RAB1A	98	98.010	Sarcophilus_harrisii
ENSRNOG00000004992	Rab1a	99	95.545	ENSSMAG00000021049	-	100	95.545	Scophthalmus_maximus
ENSRNOG00000004992	Rab1a	99	96.040	ENSSDUG00000022535	RAB1A	100	96.040	Seriola_dumerili
ENSRNOG00000004992	Rab1a	100	99.512	ENSSPUG00000012822	RAB1A	100	99.512	Sphenodon_punctatus
ENSRNOG00000004992	Rab1a	99	95.545	ENSSPAG00000012564	-	100	95.545	Stegastes_partitus
ENSRNOG00000004992	Rab1a	100	100.000	ENSSSCG00000008359	RAB1A	100	100.000	Sus_scrofa
ENSRNOG00000004992	Rab1a	100	97.073	ENSTGUG00000002328	RAB1A	100	97.073	Taeniopygia_guttata
ENSRNOG00000004992	Rab1a	99	95.050	ENSTRUG00000024994	RAB1A	100	95.050	Takifugu_rubripes
ENSRNOG00000004992	Rab1a	96	100.000	ENSUMAG00000021038	RAB1A	99	100.000	Ursus_maritimus
ENSRNOG00000004992	Rab1a	97	99.495	ENSVPAG00000005640	RAB1A	99	99.495	Vicugna_pacos
ENSRNOG00000004992	Rab1a	100	100.000	ENSVVUG00000027588	RAB1A	100	100.000	Vulpes_vulpes
ENSRNOG00000004992	Rab1a	99	94.554	ENSXMAG00000015776	-	100	94.554	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000045	autophagosome assembly	21873635.	IBA	Process
GO:0000045	autophagosome assembly	-	ISO	Process
GO:0000045	autophagosome assembly	-	ISS	Process
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0000139	Golgi membrane	8807639.	IDA	Component
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0003924	GTPase activity	-	ISO	Function
GO:0003924	GTPase activity	-	ISS	Function
GO:0005525	GTP binding	8807639.	IDA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005769	early endosome	21303926.	IDA	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	8807639.	IDA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	15728249.	IDA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	-	ISO	Process
GO:0006897	endocytosis	21303926.	IMP	Process
GO:0006897	endocytosis	-	ISO	Process
GO:0006914	autophagy	-	ISO	Process
GO:0006914	autophagy	-	ISS	Process
GO:0007030	Golgi organization	-	ISO	Process
GO:0016477	cell migration	-	ISO	Process
GO:0016477	cell migration	-	ISS	Process
GO:0019068	virion assembly	-	ISO	Process
GO:0030252	growth hormone secretion	-	ISO	Process
GO:0030252	growth hormone secretion	-	ISS	Process
GO:0032402	melanosome transport	-	ISO	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	8807639.	IC	Process
GO:0034446	substrate adhesion-dependent cell spreading	-	ISO	Process
GO:0042470	melanosome	-	IEA	Component
GO:0042470	melanosome	-	ISO	Component
GO:0042742	defense response to bacterium	-	ISO	Process
GO:0042742	defense response to bacterium	-	ISS	Process
GO:0043025	neuronal cell body	8573789.	IDA	Component
GO:0047496	vesicle transport along microtubule	21303926.	IMP	Process
GO:0047496	vesicle transport along microtubule	-	ISO	Process
GO:0060271	cilium assembly	-	ISO	Process
GO:0070382	exocytic vesicle	-	ISO	Component
GO:0072606	interleukin-8 secretion	-	ISO	Process
GO:0072606	interleukin-8 secretion	-	ISS	Process
GO:0090110	cargo loading into COPII-coated vesicle	-	ISO	Process
GO:0090557	establishment of endothelial intestinal barrier	-	ISO	Process
GO:0098793	presynapse	23622064.	EXP	Component
GO:0098793	presynapse	20926670.23622064.	IDA	Component
GO:1903020	positive regulation of glycoprotein metabolic process	-	ISO	Process