EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005031 (Gene tree)
Gene ID: 303076
Gene Symbol: Surf6
Alias: LOC311823|MGC109125
Full Name: surfeit 6
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10748 bases
Position: chr3:5441409-5452156
Accession: 1307382
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000006699	SURF6	PF04935.12	2e-37	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000006699	-	2023	XM_006233784	ENSRNOP00000006699	354 (aa)	XP_006233846	Q5BJZ4

Gene Model

Click here to download ENSRNOG00000005031's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005031's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005031	Surf6	99	73.056	ENSG00000148296	SURF6	99	73.056	Homo_sapiens
ENSRNOG00000005031	Surf6	99	45.380	ENSAPOG00000021015	surf6	99	43.597	Acanthochromis_polyacanthus
ENSRNOG00000005031	Surf6	99	66.396	ENSAMEG00000011733	SURF6	100	66.396	Ailuropoda_melanoleuca
ENSRNOG00000005031	Surf6	99	45.055	ENSAOCG00000015839	surf6	99	43.407	Amphiprion_ocellaris
ENSRNOG00000005031	Surf6	99	44.780	ENSAPEG00000022442	surf6	99	43.132	Amphiprion_percula
ENSRNOG00000005031	Surf6	99	43.407	ENSATEG00000012640	surf6	99	44.110	Anabas_testudineus
ENSRNOG00000005031	Surf6	88	52.174	ENSAPLG00000005069	SURF6	87	54.983	Anas_platyrhynchos
ENSRNOG00000005031	Surf6	100	68.579	ENSANAG00000021046	SURF6	100	71.148	Aotus_nancymaae
ENSRNOG00000005031	Surf6	99	46.154	ENSACLG00000027819	surf6	99	46.944	Astatotilapia_calliptera
ENSRNOG00000005031	Surf6	99	43.850	ENSAMXG00000012546	surf6	99	43.467	Astyanax_mexicanus
ENSRNOG00000005031	Surf6	100	69.188	ENSBTAG00000011554	SURF6	100	69.188	Bos_taurus
ENSRNOG00000005031	Surf6	100	68.715	ENSCJAG00000017951	SURF6	100	69.274	Callithrix_jacchus
ENSRNOG00000005031	Surf6	100	62.535	ENSCAFG00000005159	-	100	62.396	Canis_familiaris
ENSRNOG00000005031	Surf6	100	67.887	ENSCAFG00000019758	-	100	67.967	Canis_familiaris
ENSRNOG00000005031	Surf6	100	67.887	ENSCAFG00020001156	SURF6	100	67.967	Canis_lupus_dingo
ENSRNOG00000005031	Surf6	100	67.978	ENSCHIG00000025220	SURF6	100	68.627	Capra_hircus
ENSRNOG00000005031	Surf6	100	72.191	ENSTSYG00000008431	SURF6	100	72.191	Carlito_syrichta
ENSRNOG00000005031	Surf6	91	72.923	ENSCAPG00000010696	SURF6	100	72.923	Cavia_aperea
ENSRNOG00000005031	Surf6	100	72.626	ENSCPOG00000030454	SURF6	100	73.184	Cavia_porcellus
ENSRNOG00000005031	Surf6	64	76.957	ENSCCAG00000025688	SURF6	100	76.957	Cebus_capucinus
ENSRNOG00000005031	Surf6	99	72.778	ENSCATG00000042004	SURF6	99	73.056	Cercocebus_atys
ENSRNOG00000005031	Surf6	99	75.350	ENSCLAG00000004429	SURF6	89	75.910	Chinchilla_lanigera
ENSRNOG00000005031	Surf6	99	68.665	ENSCSAG00000015203	-	99	68.665	Chlorocebus_sabaeus
ENSRNOG00000005031	Surf6	99	72.222	ENSCSAG00000018888	-	99	72.222	Chlorocebus_sabaeus
ENSRNOG00000005031	Surf6	99	53.221	ENSCPBG00000021169	SURF6	99	53.297	Chrysemys_picta_bellii
ENSRNOG00000005031	Surf6	53	86.250	ENSCANG00000035022	SURF6	98	86.250	Colobus_angolensis_palliatus
ENSRNOG00000005031	Surf6	100	82.817	ENSCGRG00000017035	Surf6	100	82.817	Cricetulus_griseus_crigri
ENSRNOG00000005031	Surf6	99	46.111	ENSCSEG00000015172	surf6	99	46.389	Cynoglossus_semilaevis
ENSRNOG00000005031	Surf6	71	52.308	ENSCVAG00000015730	surf6	80	52.308	Cyprinodon_variegatus
ENSRNOG00000005031	Surf6	99	41.144	ENSDARG00000035427	surf6	100	42.547	Danio_rerio
ENSRNOG00000005031	Surf6	100	71.348	ENSDNOG00000049519	SURF6	97	71.348	Dasypus_novemcinctus
ENSRNOG00000005031	Surf6	100	74.576	ENSDORG00000010761	Surf6	100	74.576	Dipodomys_ordii
ENSRNOG00000005031	Surf6	91	64.706	ENSETEG00000004239	SURF6	99	67.183	Echinops_telfairi
ENSRNOG00000005031	Surf6	100	69.081	ENSEASG00005009885	SURF6	100	69.081	Equus_asinus_asinus
ENSRNOG00000005031	Surf6	100	70.506	ENSECAG00000021229	SURF6	100	70.506	Equus_caballus
ENSRNOG00000005031	Surf6	81	68.966	ENSEEUG00000011071	-	100	68.966	Erinaceus_europaeus
ENSRNOG00000005031	Surf6	64	73.451	ENSEEUG00000001732	-	100	73.451	Erinaceus_europaeus
ENSRNOG00000005031	Surf6	100	68.169	ENSFCAG00000040914	SURF6	100	68.169	Felis_catus
ENSRNOG00000005031	Surf6	99	50.556	ENSFALG00000001495	SURF6	99	49.727	Ficedula_albicollis
ENSRNOG00000005031	Surf6	90	72.446	ENSFDAG00000007052	SURF6	99	72.446	Fukomys_damarensis
ENSRNOG00000005031	Surf6	99	45.833	ENSFHEG00000002290	surf6	99	46.944	Fundulus_heteroclitus
ENSRNOG00000005031	Surf6	99	50.138	ENSGALG00000038413	SURF6	100	50.138	Gallus_gallus
ENSRNOG00000005031	Surf6	99	47.778	ENSGAFG00000013618	surf6	99	47.778	Gambusia_affinis
ENSRNOG00000005031	Surf6	99	52.957	ENSGAGG00000010286	SURF6	99	52.957	Gopherus_agassizii
ENSRNOG00000005031	Surf6	99	73.333	ENSGGOG00000014426	SURF6	99	73.333	Gorilla_gorilla
ENSRNOG00000005031	Surf6	99	46.154	ENSHBUG00000008764	surf6	99	46.944	Haplochromis_burtoni
ENSRNOG00000005031	Surf6	100	74.510	ENSHGLG00000013027	SURF6	100	74.510	Heterocephalus_glaber_female
ENSRNOG00000005031	Surf6	91	73.926	ENSHGLG00100015654	SURF6	83	73.926	Heterocephalus_glaber_male
ENSRNOG00000005031	Surf6	99	44.598	ENSHCOG00000001639	surf6	99	45.961	Hippocampus_comes
ENSRNOG00000005031	Surf6	99	38.798	ENSIPUG00000008066	surf6	73	45.489	Ictalurus_punctatus
ENSRNOG00000005031	Surf6	100	71.031	ENSSTOG00000020164	SURF6	100	71.866	Ictidomys_tridecemlineatus
ENSRNOG00000005031	Surf6	100	75.775	ENSJJAG00000016287	Surf6	100	76.338	Jaculus_jaculus
ENSRNOG00000005031	Surf6	99	45.098	ENSKMAG00000009936	surf6	100	41.620	Kryptolebias_marmoratus
ENSRNOG00000005031	Surf6	97	47.727	ENSLBEG00000024311	surf6	99	48.295	Labrus_bergylta
ENSRNOG00000005031	Surf6	98	44.571	ENSLACG00000013322	SURF6	99	46.448	Latimeria_chalumnae
ENSRNOG00000005031	Surf6	100	48.533	ENSLOCG00000004072	surf6	100	48.800	Lepisosteus_oculatus
ENSRNOG00000005031	Surf6	100	70.868	ENSLAFG00000026419	SURF6	100	70.868	Loxodonta_africana
ENSRNOG00000005031	Surf6	92	72.072	ENSMMUG00000022339	-	99	72.372	Macaca_mulatta
ENSRNOG00000005031	Surf6	99	72.500	ENSMNEG00000033787	SURF6	99	72.778	Macaca_nemestrina
ENSRNOG00000005031	Surf6	99	71.111	ENSMLEG00000028750	SURF6	99	72.222	Mandrillus_leucophaeus
ENSRNOG00000005031	Surf6	99	42.897	ENSMAMG00000018269	surf6	99	43.175	Mastacembelus_armatus
ENSRNOG00000005031	Surf6	99	46.154	ENSMZEG00005003188	surf6	99	46.944	Maylandia_zebra
ENSRNOG00000005031	Surf6	99	49.448	ENSMGAG00000006371	SURF6	100	50.138	Meleagris_gallopavo
ENSRNOG00000005031	Surf6	100	84.789	ENSMAUG00000020676	Surf6	100	84.789	Mesocricetus_auratus
ENSRNOG00000005031	Surf6	100	72.753	ENSMICG00000046077	SURF6	100	72.753	Microcebus_murinus
ENSRNOG00000005031	Surf6	100	83.662	ENSMOCG00000011956	Surf6	100	83.662	Microtus_ochrogaster
ENSRNOG00000005031	Surf6	99	62.050	ENSMODG00000012744	SURF6	99	62.881	Monodelphis_domestica
ENSRNOG00000005031	Surf6	99	41.598	ENSMALG00000012310	surf6	99	41.873	Monopterus_albus
ENSRNOG00000005031	Surf6	100	88.451	MGP_CAROLIEiJ_G0023325	Surf6	100	88.451	Mus_caroli
ENSRNOG00000005031	Surf6	100	88.202	ENSMUSG00000036160	Surf6	100	87.887	Mus_musculus
ENSRNOG00000005031	Surf6	100	88.169	MGP_PahariEiJ_G0024782	Surf6	100	88.169	Mus_pahari
ENSRNOG00000005031	Surf6	100	88.451	MGP_SPRETEiJ_G0024242	Surf6	100	88.451	Mus_spretus
ENSRNOG00000005031	Surf6	99	65.301	ENSMPUG00000012416	SURF6	94	65.301	Mustela_putorius_furo
ENSRNOG00000005031	Surf6	100	75.775	ENSNGAG00000015358	Surf6	100	76.338	Nannospalax_galili
ENSRNOG00000005031	Surf6	99	42.936	ENSNBRG00000007805	surf6	99	43.733	Neolamprologus_brichardi
ENSRNOG00000005031	Surf6	99	69.167	ENSNLEG00000013079	SURF6	99	69.167	Nomascus_leucogenys
ENSRNOG00000005031	Surf6	70	56.574	ENSMEUG00000006545	-	69	56.972	Notamacropus_eugenii
ENSRNOG00000005031	Surf6	50	79.661	ENSOPRG00000000430	-	100	73.128	Ochotona_princeps
ENSRNOG00000005031	Surf6	100	71.148	ENSODEG00000015789	SURF6	100	71.148	Octodon_degus
ENSRNOG00000005031	Surf6	98	46.240	ENSONIG00000011294	surf6	98	46.518	Oreochromis_niloticus
ENSRNOG00000005031	Surf6	99	47.191	ENSOANG00000011709	-	99	47.191	Ornithorhynchus_anatinus
ENSRNOG00000005031	Surf6	99	44.022	ENSORLG00000003980	surf6	86	44.293	Oryzias_latipes
ENSRNOG00000005031	Surf6	99	44.022	ENSORLG00020009339	surf6	86	43.164	Oryzias_latipes_hni
ENSRNOG00000005031	Surf6	99	44.110	ENSORLG00015016272	surf6	86	44.110	Oryzias_latipes_hsok
ENSRNOG00000005031	Surf6	98	43.296	ENSOMEG00000011772	surf6	86	44.044	Oryzias_melastigma
ENSRNOG00000005031	Surf6	100	72.753	ENSOGAG00000027199	SURF6	100	73.034	Otolemur_garnettii
ENSRNOG00000005031	Surf6	91	53.846	ENSOARG00000003711	SURF6	99	54.154	Ovis_aries
ENSRNOG00000005031	Surf6	99	72.778	ENSPPAG00000032305	SURF6	99	73.333	Pan_paniscus
ENSRNOG00000005031	Surf6	100	68.169	ENSPPRG00000003090	SURF6	100	68.169	Panthera_pardus
ENSRNOG00000005031	Surf6	99	72.778	ENSPTRG00000021514	SURF6	99	73.333	Pan_troglodytes
ENSRNOG00000005031	Surf6	99	71.944	ENSPANG00000026036	SURF6	99	72.222	Papio_anubis
ENSRNOG00000005031	Surf6	99	43.681	ENSPKIG00000025080	surf6	90	43.802	Paramormyrops_kingsleyae
ENSRNOG00000005031	Surf6	99	51.630	ENSPSIG00000011771	SURF6	99	52.877	Pelodiscus_sinensis
ENSRNOG00000005031	Surf6	72	50.579	ENSPMGG00000004798	surf6	99	45.455	Periophthalmus_magnuspinnatus
ENSRNOG00000005031	Surf6	100	83.380	ENSPEMG00000012589	Surf6	100	83.380	Peromyscus_maniculatus_bairdii
ENSRNOG00000005031	Surf6	99	61.096	ENSPCIG00000017358	SURF6	99	62.881	Phascolarctos_cinereus
ENSRNOG00000005031	Surf6	99	48.045	ENSPLAG00000021874	surf6	99	49.162	Poecilia_latipinna
ENSRNOG00000005031	Surf6	99	47.207	ENSPMEG00000009276	surf6	99	48.324	Poecilia_mexicana
ENSRNOG00000005031	Surf6	81	50.680	ENSPMEG00000009994	surf6	94	48.936	Poecilia_mexicana
ENSRNOG00000005031	Surf6	81	50.680	ENSPREG00000021969	surf6	100	48.923	Poecilia_reticulata
ENSRNOG00000005031	Surf6	99	71.667	ENSPPYG00000019728	SURF6	99	73.056	Pongo_abelii
ENSRNOG00000005031	Surf6	85	61.386	ENSPCAG00000002906	SURF6	99	61.716	Procavia_capensis
ENSRNOG00000005031	Surf6	100	72.191	ENSPCOG00000015707	SURF6	100	72.191	Propithecus_coquereli
ENSRNOG00000005031	Surf6	100	64.525	ENSPVAG00000017042	SURF6	100	65.642	Pteropus_vampyrus
ENSRNOG00000005031	Surf6	99	45.879	ENSPNYG00000003445	surf6	99	47.222	Pundamilia_nyererei
ENSRNOG00000005031	Surf6	69	49.412	ENSPNAG00000006939	surf6	99	40.811	Pygocentrus_nattereri
ENSRNOG00000005031	Surf6	99	72.500	ENSRBIG00000028268	SURF6	99	72.500	Rhinopithecus_bieti
ENSRNOG00000005031	Surf6	99	72.500	ENSRROG00000012667	SURF6	99	72.500	Rhinopithecus_roxellana
ENSRNOG00000005031	Surf6	100	62.674	ENSSBOG00000024264	-	100	63.260	Saimiri_boliviensis_boliviensis
ENSRNOG00000005031	Surf6	100	59.945	ENSSHAG00000003742	SURF6	100	59.780	Sarcophilus_harrisii
ENSRNOG00000005031	Surf6	99	44.882	ENSSFOG00015016640	surf6	97	48.021	Scleropages_formosus
ENSRNOG00000005031	Surf6	99	47.934	ENSSMAG00000009846	surf6	99	49.036	Scophthalmus_maximus
ENSRNOG00000005031	Surf6	98	47.383	ENSSDUG00000007947	surf6	99	47.658	Seriola_dumerili
ENSRNOG00000005031	Surf6	99	46.575	ENSSLDG00000015027	surf6	99	47.123	Seriola_lalandi_dorsalis
ENSRNOG00000005031	Surf6	99	50.425	ENSSPUG00000015954	SURF6	99	51.832	Sphenodon_punctatus
ENSRNOG00000005031	Surf6	99	46.175	ENSSPAG00000005916	surf6	99	44.536	Stegastes_partitus
ENSRNOG00000005031	Surf6	100	65.070	ENSSSCG00000032106	SURF6	100	66.479	Sus_scrofa
ENSRNOG00000005031	Surf6	70	60.729	ENSTGUG00000005445	-	99	60.729	Taeniopygia_guttata
ENSRNOG00000005031	Surf6	99	49.454	ENSTGUG00000005438	-	100	50.000	Taeniopygia_guttata
ENSRNOG00000005031	Surf6	99	46.814	ENSTRUG00000023872	surf6	99	46.832	Takifugu_rubripes
ENSRNOG00000005031	Surf6	99	46.610	ENSTNIG00000007503	surf6	99	46.610	Tetraodon_nigroviridis
ENSRNOG00000005031	Surf6	100	68.033	ENSUAMG00000014627	SURF6	100	68.033	Ursus_americanus
ENSRNOG00000005031	Surf6	100	68.169	ENSVVUG00000027289	SURF6	100	68.169	Vulpes_vulpes
ENSRNOG00000005031	Surf6	99	44.475	ENSXETG00000005018	surf6	99	42.623	Xenopus_tropicalis
ENSRNOG00000005031	Surf6	99	47.339	ENSXCOG00000001322	surf6	99	47.899	Xiphophorus_couchianus
ENSRNOG00000005031	Surf6	99	47.207	ENSXMAG00000024608	surf6	99	47.765	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001652	granular component	-	IEA	Component
GO:0001652	granular component	-	ISO	Component
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	-	ISO	Process
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process
GO:0042274	ribosomal small subunit biogenesis	21873635.	IBA	Process