EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005218 (Gene tree)
Gene ID: 305479
Gene Symbol: Sf3a1
Alias: LOC305479
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 20750 bases
Position: chr14:84393182-84413931
Accession: 1311477
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008355	PRP21_like_P	PF12230.8	6.9e-52	1	1
ENSRNOP00000008355	Surp	PF01805.20	6.7e-46	1	2
ENSRNOP00000008355	Surp	PF01805.20	6.7e-46	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008355	-	5019	-	ENSRNOP00000008355	791 (aa)	-	D3ZQM0

Gene Model

Click here to download ENSRNOG00000005218's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005218's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005218	Sf3a1	100	98.108	ENSG00000099995	SF3A1	100	98.108	Homo_sapiens
ENSRNOG00000005218	Sf3a1	99	83.081	ENSAPOG00000020465	sf3a1	99	85.032	Acanthochromis_polyacanthus
ENSRNOG00000005218	Sf3a1	100	97.610	ENSAMEG00000007737	SF3A1	100	97.610	Ailuropoda_melanoleuca
ENSRNOG00000005218	Sf3a1	99	84.625	ENSACIG00000020672	sf3a1	98	85.382	Amphilophus_citrinellus
ENSRNOG00000005218	Sf3a1	99	83.100	ENSAOCG00000003060	sf3a1	99	84.903	Amphiprion_ocellaris
ENSRNOG00000005218	Sf3a1	99	83.227	ENSAPEG00000010735	sf3a1	99	85.032	Amphiprion_percula
ENSRNOG00000005218	Sf3a1	96	85.417	ENSATEG00000021201	sf3a1	97	84.625	Anabas_testudineus
ENSRNOG00000005218	Sf3a1	95	93.659	ENSAPLG00000009057	SF3A1	99	92.645	Anas_platyrhynchos
ENSRNOG00000005218	Sf3a1	100	85.714	ENSACAG00000009415	SF3A1	100	86.330	Anolis_carolinensis
ENSRNOG00000005218	Sf3a1	100	98.235	ENSANAG00000032045	SF3A1	100	98.235	Aotus_nancymaae
ENSRNOG00000005218	Sf3a1	99	84.071	ENSACLG00000012622	sf3a1	98	85.233	Astatotilapia_calliptera
ENSRNOG00000005218	Sf3a1	99	83.059	ENSAMXG00000005382	sf3a1	99	84.062	Astyanax_mexicanus
ENSRNOG00000005218	Sf3a1	100	98.235	ENSBTAG00000003390	SF3A1	100	98.235	Bos_taurus
ENSRNOG00000005218	Sf3a1	84	43.423	WBGene00004188	prp-21	90	45.038	Caenorhabditis_elegans
ENSRNOG00000005218	Sf3a1	100	98.361	ENSCJAG00000010370	SF3A1	100	98.361	Callithrix_jacchus
ENSRNOG00000005218	Sf3a1	100	97.982	ENSCAFG00000012559	SF3A1	100	97.982	Canis_familiaris
ENSRNOG00000005218	Sf3a1	100	97.982	ENSCAFG00020000838	SF3A1	100	97.982	Canis_lupus_dingo
ENSRNOG00000005218	Sf3a1	100	98.108	ENSCHIG00000018642	SF3A1	100	98.108	Capra_hircus
ENSRNOG00000005218	Sf3a1	100	98.613	ENSTSYG00000004739	SF3A1	100	98.613	Carlito_syrichta
ENSRNOG00000005218	Sf3a1	94	80.908	ENSCAPG00000015414	SF3A1	98	80.908	Cavia_aperea
ENSRNOG00000005218	Sf3a1	100	98.361	ENSCPOG00000014589	SF3A1	100	98.361	Cavia_porcellus
ENSRNOG00000005218	Sf3a1	100	98.235	ENSCCAG00000032006	SF3A1	100	98.235	Cebus_capucinus
ENSRNOG00000005218	Sf3a1	100	98.361	ENSCATG00000029241	SF3A1	100	98.361	Cercocebus_atys
ENSRNOG00000005218	Sf3a1	100	98.108	ENSCLAG00000006508	SF3A1	100	98.108	Chinchilla_lanigera
ENSRNOG00000005218	Sf3a1	100	98.235	ENSCSAG00000009470	SF3A1	100	98.235	Chlorocebus_sabaeus
ENSRNOG00000005218	Sf3a1	61	98.524	ENSCHOG00000005201	SF3A1	69	98.524	Choloepus_hoffmanni
ENSRNOG00000005218	Sf3a1	100	90.680	ENSCPBG00000007595	SF3A1	98	91.742	Chrysemys_picta_bellii
ENSRNOG00000005218	Sf3a1	94	52.646	ENSCING00000008526	-	66	57.663	Ciona_intestinalis
ENSRNOG00000005218	Sf3a1	96	51.358	ENSCSAVG00000005608	-	90	65.179	Ciona_savignyi
ENSRNOG00000005218	Sf3a1	100	98.235	ENSCANG00000033564	SF3A1	100	98.235	Colobus_angolensis_palliatus
ENSRNOG00000005218	Sf3a1	100	98.865	ENSCGRG00001008933	Sf3a1	100	98.865	Cricetulus_griseus_chok1gshd
ENSRNOG00000005218	Sf3a1	100	98.865	ENSCGRG00000006127	Sf3a1	100	98.865	Cricetulus_griseus_crigri
ENSRNOG00000005218	Sf3a1	99	81.853	ENSCSEG00000010792	sf3a1	98	82.558	Cynoglossus_semilaevis
ENSRNOG00000005218	Sf3a1	99	82.465	ENSCVAG00000004560	sf3a1	99	82.990	Cyprinodon_variegatus
ENSRNOG00000005218	Sf3a1	99	82.360	ENSDARG00000041887	sf3a1	98	83.592	Danio_rerio
ENSRNOG00000005218	Sf3a1	100	97.862	ENSDNOG00000010629	SF3A1	100	97.862	Dasypus_novemcinctus
ENSRNOG00000005218	Sf3a1	100	98.361	ENSDORG00000005613	Sf3a1	100	98.361	Dipodomys_ordii
ENSRNOG00000005218	Sf3a1	83	60.000	FBgn0266917	Sf3a1	84	59.640	Drosophila_melanogaster
ENSRNOG00000005218	Sf3a1	84	96.557	ENSETEG00000017194	SF3A1	95	96.407	Echinops_telfairi
ENSRNOG00000005218	Sf3a1	97	66.504	ENSEBUG00000001285	sf3a1	77	67.341	Eptatretus_burgeri
ENSRNOG00000005218	Sf3a1	100	98.361	ENSEASG00005010254	SF3A1	100	98.361	Equus_asinus_asinus
ENSRNOG00000005218	Sf3a1	100	98.361	ENSECAG00000023962	SF3A1	100	98.361	Equus_caballus
ENSRNOG00000005218	Sf3a1	73	93.443	ENSEEUG00000003159	SF3A1	82	93.443	Erinaceus_europaeus
ENSRNOG00000005218	Sf3a1	99	82.013	ENSELUG00000022578	sf3a1	99	82.519	Esox_lucius
ENSRNOG00000005218	Sf3a1	100	98.235	ENSFCAG00000011932	SF3A1	100	98.235	Felis_catus
ENSRNOG00000005218	Sf3a1	95	92.593	ENSFALG00000006944	SF3A1	97	92.119	Ficedula_albicollis
ENSRNOG00000005218	Sf3a1	100	98.613	ENSFDAG00000009560	SF3A1	100	98.613	Fukomys_damarensis
ENSRNOG00000005218	Sf3a1	99	82.741	ENSFHEG00000010866	sf3a1	99	84.278	Fundulus_heteroclitus
ENSRNOG00000005218	Sf3a1	99	80.784	ENSGMOG00000016024	sf3a1	98	80.128	Gadus_morhua
ENSRNOG00000005218	Sf3a1	95	93.651	ENSGALG00000007937	SF3A1	97	92.765	Gallus_gallus
ENSRNOG00000005218	Sf3a1	99	82.973	ENSGAFG00000009111	sf3a1	98	83.312	Gambusia_affinis
ENSRNOG00000005218	Sf3a1	99	82.427	ENSGACG00000011893	sf3a1	97	82.902	Gasterosteus_aculeatus
ENSRNOG00000005218	Sf3a1	96	90.670	ENSGAGG00000000762	SF3A1	97	91.644	Gopherus_agassizii
ENSRNOG00000005218	Sf3a1	100	98.108	ENSGGOG00000012631	SF3A1	100	98.108	Gorilla_gorilla
ENSRNOG00000005218	Sf3a1	99	84.071	ENSHBUG00000015795	sf3a1	98	85.233	Haplochromis_burtoni
ENSRNOG00000005218	Sf3a1	100	98.613	ENSHGLG00000007907	SF3A1	100	98.613	Heterocephalus_glaber_female
ENSRNOG00000005218	Sf3a1	100	98.613	ENSHGLG00100013799	SF3A1	100	98.613	Heterocephalus_glaber_male
ENSRNOG00000005218	Sf3a1	99	79.924	ENSHCOG00000015423	sf3a1	99	80.774	Hippocampus_comes
ENSRNOG00000005218	Sf3a1	96	82.161	ENSIPUG00000002470	sf3a1	98	82.552	Ictalurus_punctatus
ENSRNOG00000005218	Sf3a1	100	98.613	ENSSTOG00000013892	SF3A1	100	98.613	Ictidomys_tridecemlineatus
ENSRNOG00000005218	Sf3a1	100	98.741	ENSJJAG00000022566	Sf3a1	100	98.741	Jaculus_jaculus
ENSRNOG00000005218	Sf3a1	99	82.702	ENSKMAG00000002400	sf3a1	98	84.605	Kryptolebias_marmoratus
ENSRNOG00000005218	Sf3a1	99	82.323	ENSLBEG00000022974	sf3a1	99	82.839	Labrus_bergylta
ENSRNOG00000005218	Sf3a1	100	86.951	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSRNOG00000005218	Sf3a1	100	84.336	ENSLOCG00000008251	sf3a1	98	84.794	Lepisosteus_oculatus
ENSRNOG00000005218	Sf3a1	100	97.856	ENSLAFG00000000448	SF3A1	100	97.856	Loxodonta_africana
ENSRNOG00000005218	Sf3a1	98	62.197	ENSLAFG00000026032	-	97	61.856	Loxodonta_africana
ENSRNOG00000005218	Sf3a1	100	98.108	ENSMFAG00000031979	SF3A1	100	98.108	Macaca_fascicularis
ENSRNOG00000005218	Sf3a1	100	98.108	ENSMMUG00000005547	SF3A1	100	98.108	Macaca_mulatta
ENSRNOG00000005218	Sf3a1	100	97.982	ENSMNEG00000037229	SF3A1	100	97.982	Macaca_nemestrina
ENSRNOG00000005218	Sf3a1	100	98.235	ENSMLEG00000041908	SF3A1	100	98.235	Mandrillus_leucophaeus
ENSRNOG00000005218	Sf3a1	97	85.104	ENSMAMG00000006460	sf3a1	96	85.807	Mastacembelus_armatus
ENSRNOG00000005218	Sf3a1	99	84.071	ENSMZEG00005009633	sf3a1	98	85.233	Maylandia_zebra
ENSRNOG00000005218	Sf3a1	95	93.651	ENSMGAG00000001330	SF3A1	99	92.765	Meleagris_gallopavo
ENSRNOG00000005218	Sf3a1	92	95.355	ENSMAUG00000020317	Sf3a1	94	95.355	Mesocricetus_auratus
ENSRNOG00000005218	Sf3a1	100	97.982	ENSMICG00000010038	SF3A1	100	97.982	Microcebus_murinus
ENSRNOG00000005218	Sf3a1	100	98.865	ENSMOCG00000008438	Sf3a1	100	98.865	Microtus_ochrogaster
ENSRNOG00000005218	Sf3a1	99	81.345	ENSMMOG00000015588	sf3a1	97	81.901	Mola_mola
ENSRNOG00000005218	Sf3a1	100	97.100	ENSMODG00000009270	SF3A1	100	97.100	Monodelphis_domestica
ENSRNOG00000005218	Sf3a1	99	84.244	ENSMALG00000000148	sf3a1	99	85.831	Monopterus_albus
ENSRNOG00000005218	Sf3a1	100	99.241	MGP_CAROLIEiJ_G0016029	Sf3a1	100	99.241	Mus_caroli
ENSRNOG00000005218	Sf3a1	100	99.241	ENSMUSG00000002129	Sf3a1	100	99.241	Mus_musculus
ENSRNOG00000005218	Sf3a1	100	99.241	MGP_PahariEiJ_G0016862	Sf3a1	100	99.241	Mus_pahari
ENSRNOG00000005218	Sf3a1	100	99.241	MGP_SPRETEiJ_G0016870	Sf3a1	100	99.241	Mus_spretus
ENSRNOG00000005218	Sf3a1	100	97.982	ENSMPUG00000013144	SF3A1	100	97.982	Mustela_putorius_furo
ENSRNOG00000005218	Sf3a1	100	98.361	ENSMLUG00000002139	SF3A1	100	98.361	Myotis_lucifugus
ENSRNOG00000005218	Sf3a1	100	98.361	ENSNGAG00000016977	Sf3a1	100	98.361	Nannospalax_galili
ENSRNOG00000005218	Sf3a1	99	84.244	ENSNBRG00000016642	sf3a1	96	86.298	Neolamprologus_brichardi
ENSRNOG00000005218	Sf3a1	100	98.235	ENSNLEG00000003686	SF3A1	100	98.235	Nomascus_leucogenys
ENSRNOG00000005218	Sf3a1	94	87.500	ENSMEUG00000008741	SF3A1	97	87.179	Notamacropus_eugenii
ENSRNOG00000005218	Sf3a1	100	98.108	ENSOPRG00000016636	SF3A1	100	98.108	Ochotona_princeps
ENSRNOG00000005218	Sf3a1	100	98.613	ENSODEG00000002571	SF3A1	100	98.613	Octodon_degus
ENSRNOG00000005218	Sf3a1	99	83.712	ENSONIG00000010848	sf3a1	98	84.605	Oreochromis_niloticus
ENSRNOG00000005218	Sf3a1	100	98.108	ENSOCUG00000007633	SF3A1	100	98.108	Oryctolagus_cuniculus
ENSRNOG00000005218	Sf3a1	95	81.818	ENSORLG00000013050	sf3a1	98	83.558	Oryzias_latipes
ENSRNOG00000005218	Sf3a1	99	80.178	ENSORLG00020003236	sf3a1	96	81.806	Oryzias_latipes_hni
ENSRNOG00000005218	Sf3a1	99	82.071	ENSORLG00015017411	sf3a1	99	83.742	Oryzias_latipes_hsok
ENSRNOG00000005218	Sf3a1	99	82.323	ENSOMEG00000013362	sf3a1	99	83.226	Oryzias_melastigma
ENSRNOG00000005218	Sf3a1	100	98.108	ENSOGAG00000012931	SF3A1	100	98.108	Otolemur_garnettii
ENSRNOG00000005218	Sf3a1	100	96.343	ENSOARG00000006849	SF3A1	100	96.343	Ovis_aries
ENSRNOG00000005218	Sf3a1	100	97.100	ENSPPAG00000041790	SF3A1	100	97.100	Pan_paniscus
ENSRNOG00000005218	Sf3a1	100	98.235	ENSPPRG00000004391	SF3A1	100	98.235	Panthera_pardus
ENSRNOG00000005218	Sf3a1	97	98.446	ENSPTIG00000000844	SF3A1	100	98.446	Panthera_tigris_altaica
ENSRNOG00000005218	Sf3a1	100	98.108	ENSPTRG00000014240	SF3A1	100	98.108	Pan_troglodytes
ENSRNOG00000005218	Sf3a1	100	98.235	ENSPANG00000020772	SF3A1	100	98.235	Papio_anubis
ENSRNOG00000005218	Sf3a1	83	92.308	ENSPSIG00000012803	SF3A1	96	93.951	Pelodiscus_sinensis
ENSRNOG00000005218	Sf3a1	96	84.162	ENSPMGG00000023096	sf3a1	100	83.901	Periophthalmus_magnuspinnatus
ENSRNOG00000005218	Sf3a1	100	98.991	ENSPEMG00000009494	Sf3a1	100	98.991	Peromyscus_maniculatus_bairdii
ENSRNOG00000005218	Sf3a1	64	79.767	ENSPMAG00000007139	-	89	79.886	Petromyzon_marinus
ENSRNOG00000005218	Sf3a1	100	96.847	ENSPCIG00000022692	SF3A1	100	96.847	Phascolarctos_cinereus
ENSRNOG00000005218	Sf3a1	99	74.495	ENSPFOG00000016768	sf3a1	93	78.095	Poecilia_formosa
ENSRNOG00000005218	Sf3a1	99	82.084	ENSPLAG00000017268	sf3a1	99	83.505	Poecilia_latipinna
ENSRNOG00000005218	Sf3a1	84	85.241	ENSPMEG00000019811	sf3a1	98	84.337	Poecilia_mexicana
ENSRNOG00000005218	Sf3a1	99	82.211	ENSPREG00000010347	sf3a1	99	84.021	Poecilia_reticulata
ENSRNOG00000005218	Sf3a1	100	98.235	ENSPPYG00000011707	SF3A1	100	98.235	Pongo_abelii
ENSRNOG00000005218	Sf3a1	57	97.642	ENSPCAG00000003266	SF3A1	57	97.642	Procavia_capensis
ENSRNOG00000005218	Sf3a1	100	98.108	ENSPCOG00000026630	SF3A1	100	98.108	Propithecus_coquereli
ENSRNOG00000005218	Sf3a1	100	93.695	ENSPVAG00000017719	SF3A1	94	97.315	Pteropus_vampyrus
ENSRNOG00000005218	Sf3a1	99	84.071	ENSPNYG00000018706	sf3a1	98	85.233	Pundamilia_nyererei
ENSRNOG00000005218	Sf3a1	98	82.952	ENSPNAG00000003721	sf3a1	99	83.312	Pygocentrus_nattereri
ENSRNOG00000005218	Sf3a1	100	98.235	ENSRBIG00000032167	SF3A1	100	98.235	Rhinopithecus_bieti
ENSRNOG00000005218	Sf3a1	100	98.235	ENSRROG00000044908	SF3A1	100	98.235	Rhinopithecus_roxellana
ENSRNOG00000005218	Sf3a1	97	94.186	ENSSBOG00000021960	SF3A1	100	98.523	Saimiri_boliviensis_boliviensis
ENSRNOG00000005218	Sf3a1	99	92.929	ENSSHAG00000003666	SF3A1	98	94.308	Sarcophilus_harrisii
ENSRNOG00000005218	Sf3a1	99	83.061	ENSSFOG00015004579	sf3a1	99	84.744	Scleropages_formosus
ENSRNOG00000005218	Sf3a1	99	81.957	ENSSMAG00000004275	sf3a1	98	82.406	Scophthalmus_maximus
ENSRNOG00000005218	Sf3a1	99	83.736	ENSSDUG00000022219	sf3a1	98	84.217	Seriola_dumerili
ENSRNOG00000005218	Sf3a1	99	83.736	ENSSLDG00000012642	sf3a1	98	84.217	Seriola_lalandi_dorsalis
ENSRNOG00000005218	Sf3a1	97	94.948	ENSSARG00000005960	SF3A1	100	94.948	Sorex_araneus
ENSRNOG00000005218	Sf3a1	96	91.969	ENSSPUG00000018863	SF3A1	98	92.347	Sphenodon_punctatus
ENSRNOG00000005218	Sf3a1	99	84.091	ENSSPAG00000011856	sf3a1	99	84.774	Stegastes_partitus
ENSRNOG00000005218	Sf3a1	100	98.108	ENSSSCG00000010002	SF3A1	100	98.108	Sus_scrofa
ENSRNOG00000005218	Sf3a1	95	93.536	ENSTGUG00000010547	SF3A1	99	92.996	Taeniopygia_guttata
ENSRNOG00000005218	Sf3a1	99	81.187	ENSTRUG00000006118	sf3a1	97	82.353	Takifugu_rubripes
ENSRNOG00000005218	Sf3a1	64	81.041	ENSTNIG00000005713	sf3a1	89	84.821	Tetraodon_nigroviridis
ENSRNOG00000005218	Sf3a1	98	90.862	ENSTBEG00000012771	SF3A1	98	90.827	Tupaia_belangeri
ENSRNOG00000005218	Sf3a1	100	97.859	ENSTTRG00000001535	SF3A1	100	97.859	Tursiops_truncatus
ENSRNOG00000005218	Sf3a1	99	97.078	ENSUAMG00000006750	SF3A1	99	97.078	Ursus_americanus
ENSRNOG00000005218	Sf3a1	99	97.321	ENSUMAG00000016665	SF3A1	99	97.321	Ursus_maritimus
ENSRNOG00000005218	Sf3a1	100	97.982	ENSVVUG00000003075	SF3A1	100	97.982	Vulpes_vulpes
ENSRNOG00000005218	Sf3a1	100	85.320	ENSXETG00000016144	sf3a1	97	86.753	Xenopus_tropicalis
ENSRNOG00000005218	Sf3a1	99	82.719	ENSXCOG00000015653	sf3a1	98	83.441	Xiphophorus_couchianus
ENSRNOG00000005218	Sf3a1	99	82.846	ENSXMAG00000002753	sf3a1	98	83.571	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005684	U2-type spliceosomal complex	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	-	ISO	Component
GO:0006397	mRNA processing	-	ISO	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:1903241	U2-type prespliceosome assembly	-	IEA	Process
GO:1903241	U2-type prespliceosome assembly	-	ISO	Process