EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005243 (Gene tree)
Gene ID: 315045
Gene Symbol: Pop1
Alias: LOC315045
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 27785 bases
Position: chr7:73270455-73298239
Accession: 1308609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073143	POP1	PF06978.11	3.8e-39	1	2
ENSRNOP00000073143	POP1	PF06978.11	3.8e-39	2	2
ENSRNOP00000007190	POP1	PF06978.11	4.2e-39	1	2
ENSRNOP00000007190	POP1	PF06978.11	4.2e-39	2	2
ENSRNOP00000073143	POPLD	PF08170.12	4e-27	1	1
ENSRNOP00000007190	POPLD	PF08170.12	4.1e-27	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000077730	-	3329	XM_006241543	ENSRNOP00000073143	1014 (aa)	XP_006241605	A0A0G2K4R5
ENSRNOT00000007190	-	3369	-	ENSRNOP00000007190	1044 (aa)	-	D4AE75

Gene Model

Click here to download ENSRNOG00000005243's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG
rno03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005243's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005243	Pop1	100	77.832	ENSG00000104356	POP1	100	84.153	Homo_sapiens
ENSRNOG00000005243	Pop1	100	46.699	ENSAPOG00000008198	pop1	100	46.507	Acanthochromis_polyacanthus
ENSRNOG00000005243	Pop1	100	71.698	ENSAMEG00000000556	POP1	100	71.698	Ailuropoda_melanoleuca
ENSRNOG00000005243	Pop1	100	46.295	ENSACIG00000004169	POP1	100	46.102	Amphilophus_citrinellus
ENSRNOG00000005243	Pop1	100	45.722	ENSAOCG00000010991	pop1	100	45.652	Amphiprion_ocellaris
ENSRNOG00000005243	Pop1	94	45.171	ENSAPEG00000007607	pop1	99	45.766	Amphiprion_percula
ENSRNOG00000005243	Pop1	100	44.834	ENSATEG00000024814	POP1	100	45.342	Anabas_testudineus
ENSRNOG00000005243	Pop1	92	59.831	ENSAPLG00000014418	POP1	99	59.725	Anas_platyrhynchos
ENSRNOG00000005243	Pop1	100	54.075	ENSACAG00000016083	POP1	100	53.728	Anolis_carolinensis
ENSRNOG00000005243	Pop1	89	85.075	ENSANAG00000026360	POP1	99	85.075	Aotus_nancymaae
ENSRNOG00000005243	Pop1	100	46.044	ENSACLG00000010951	pop1	100	46.520	Astatotilapia_calliptera
ENSRNOG00000005243	Pop1	100	44.516	ENSAMXG00000014483	POP1	100	44.280	Astyanax_mexicanus
ENSRNOG00000005243	Pop1	100	73.607	ENSBTAG00000012596	POP1	100	73.607	Bos_taurus
ENSRNOG00000005243	Pop1	100	76.344	ENSCJAG00000015567	POP1	100	76.344	Callithrix_jacchus
ENSRNOG00000005243	Pop1	100	72.843	ENSCAFG00000000469	POP1	100	72.843	Canis_familiaris
ENSRNOG00000005243	Pop1	100	73.340	ENSCAFG00020026765	POP1	100	73.340	Canis_lupus_dingo
ENSRNOG00000005243	Pop1	100	73.314	ENSCHIG00000017066	POP1	100	73.314	Capra_hircus
ENSRNOG00000005243	Pop1	100	75.684	ENSTSYG00000003097	POP1	100	75.781	Carlito_syrichta
ENSRNOG00000005243	Pop1	100	73.515	ENSCAPG00000007251	POP1	100	73.515	Cavia_aperea
ENSRNOG00000005243	Pop1	100	75.514	ENSCPOG00000002901	POP1	100	75.514	Cavia_porcellus
ENSRNOG00000005243	Pop1	100	76.540	ENSCCAG00000018939	POP1	100	76.540	Cebus_capucinus
ENSRNOG00000005243	Pop1	100	77.441	ENSCATG00000040916	POP1	100	77.441	Cercocebus_atys
ENSRNOG00000005243	Pop1	100	76.885	ENSCLAG00000007208	POP1	97	76.885	Chinchilla_lanigera
ENSRNOG00000005243	Pop1	90	77.766	ENSCSAG00000012340	POP1	99	77.766	Chlorocebus_sabaeus
ENSRNOG00000005243	Pop1	88	80.338	ENSCHOG00000011432	POP1	96	80.338	Choloepus_hoffmanni
ENSRNOG00000005243	Pop1	100	62.305	ENSCPBG00000006373	POP1	100	62.695	Chrysemys_picta_bellii
ENSRNOG00000005243	Pop1	86	35.395	ENSCING00000008323	-	91	35.395	Ciona_intestinalis
ENSRNOG00000005243	Pop1	100	77.441	ENSCANG00000001647	POP1	100	77.441	Colobus_angolensis_palliatus
ENSRNOG00000005243	Pop1	100	84.744	ENSCGRG00001017308	Pop1	100	84.744	Cricetulus_griseus_chok1gshd
ENSRNOG00000005243	Pop1	100	78.937	ENSCGRG00000010824	Pop1	100	78.937	Cricetulus_griseus_crigri
ENSRNOG00000005243	Pop1	100	44.233	ENSCSEG00000008737	POP1	100	43.935	Cynoglossus_semilaevis
ENSRNOG00000005243	Pop1	100	45.341	ENSCVAG00000022248	pop1	100	45.341	Cyprinodon_variegatus
ENSRNOG00000005243	Pop1	100	72.968	ENSDNOG00000019974	POP1	100	72.968	Dasypus_novemcinctus
ENSRNOG00000005243	Pop1	100	68.121	ENSDORG00000015384	Pop1	100	67.773	Dipodomys_ordii
ENSRNOG00000005243	Pop1	63	32.932	FBgn0026702	l(1)G0045	70	33.909	Drosophila_melanogaster
ENSRNOG00000005243	Pop1	89	67.719	ENSETEG00000007839	POP1	88	67.719	Echinops_telfairi
ENSRNOG00000005243	Pop1	100	75.586	ENSEASG00005003189	POP1	98	75.586	Equus_asinus_asinus
ENSRNOG00000005243	Pop1	100	75.293	ENSECAG00000024236	POP1	100	75.293	Equus_caballus
ENSRNOG00000005243	Pop1	67	66.960	ENSEEUG00000003050	-	70	66.960	Erinaceus_europaeus
ENSRNOG00000005243	Pop1	100	45.115	ENSELUG00000003526	pop1	100	46.206	Esox_lucius
ENSRNOG00000005243	Pop1	100	74.927	ENSFCAG00000002168	POP1	100	74.927	Felis_catus
ENSRNOG00000005243	Pop1	100	56.738	ENSFALG00000005711	POP1	100	56.573	Ficedula_albicollis
ENSRNOG00000005243	Pop1	100	76.690	ENSFDAG00000017068	POP1	100	76.690	Fukomys_damarensis
ENSRNOG00000005243	Pop1	100	45.673	ENSFHEG00000019518	pop1	100	45.717	Fundulus_heteroclitus
ENSRNOG00000005243	Pop1	93	44.479	ENSGMOG00000000659	POP1	98	44.581	Gadus_morhua
ENSRNOG00000005243	Pop1	100	46.019	ENSGAFG00000019770	POP1	100	45.604	Gambusia_affinis
ENSRNOG00000005243	Pop1	100	44.861	ENSGACG00000003499	pop1	100	45.053	Gasterosteus_aculeatus
ENSRNOG00000005243	Pop1	100	61.132	ENSGAGG00000011737	POP1	98	61.868	Gopherus_agassizii
ENSRNOG00000005243	Pop1	100	77.637	ENSGGOG00000003176	POP1	100	77.637	Gorilla_gorilla
ENSRNOG00000005243	Pop1	100	46.711	ENSHBUG00000021583	pop1	100	46.520	Haplochromis_burtoni
ENSRNOG00000005243	Pop1	100	76.246	ENSHGLG00000006029	POP1	100	76.246	Heterocephalus_glaber_female
ENSRNOG00000005243	Pop1	100	76.246	ENSHGLG00100016879	POP1	100	76.246	Heterocephalus_glaber_male
ENSRNOG00000005243	Pop1	90	48.934	ENSHCOG00000013888	pop1	96	48.363	Hippocampus_comes
ENSRNOG00000005243	Pop1	99	43.893	ENSIPUG00000018336	pop1	99	43.470	Ictalurus_punctatus
ENSRNOG00000005243	Pop1	100	77.571	ENSSTOG00000011455	POP1	97	77.571	Ictidomys_tridecemlineatus
ENSRNOG00000005243	Pop1	100	75.074	ENSJJAG00000013325	Pop1	100	75.074	Jaculus_jaculus
ENSRNOG00000005243	Pop1	100	45.288	ENSKMAG00000001346	POP1	100	45.288	Kryptolebias_marmoratus
ENSRNOG00000005243	Pop1	89	46.739	ENSLBEG00000024457	POP1	95	46.588	Labrus_bergylta
ENSRNOG00000005243	Pop1	94	55.657	ENSLACG00000012498	POP1	100	55.657	Latimeria_chalumnae
ENSRNOG00000005243	Pop1	100	49.805	ENSLOCG00000009817	POP1	100	49.903	Lepisosteus_oculatus
ENSRNOG00000005243	Pop1	100	75.317	ENSLAFG00000010770	POP1	100	75.415	Loxodonta_africana
ENSRNOG00000005243	Pop1	100	77.637	ENSMFAG00000000347	POP1	100	77.637	Macaca_fascicularis
ENSRNOG00000005243	Pop1	100	77.441	ENSMNEG00000036870	POP1	100	77.441	Macaca_nemestrina
ENSRNOG00000005243	Pop1	100	77.441	ENSMLEG00000034986	POP1	100	77.441	Mandrillus_leucophaeus
ENSRNOG00000005243	Pop1	100	44.792	ENSMAMG00000004040	pop1	100	45.342	Mastacembelus_armatus
ENSRNOG00000005243	Pop1	100	46.616	ENSMZEG00005025448	pop1	100	46.520	Maylandia_zebra
ENSRNOG00000005243	Pop1	100	56.749	ENSMGAG00000012167	POP1	100	56.695	Meleagris_gallopavo
ENSRNOG00000005243	Pop1	100	83.859	ENSMAUG00000017537	Pop1	100	83.572	Mesocricetus_auratus
ENSRNOG00000005243	Pop1	100	76.027	ENSMICG00000004361	POP1	100	76.321	Microcebus_murinus
ENSRNOG00000005243	Pop1	100	83.349	ENSMOCG00000006356	Pop1	100	84.019	Microtus_ochrogaster
ENSRNOG00000005243	Pop1	100	42.259	ENSMMOG00000018242	pop1	100	42.259	Mola_mola
ENSRNOG00000005243	Pop1	100	63.822	ENSMODG00000006561	POP1	100	63.822	Monodelphis_domestica
ENSRNOG00000005243	Pop1	100	46.339	ENSMALG00000012621	POP1	100	46.146	Monopterus_albus
ENSRNOG00000005243	Pop1	100	91.196	MGP_CAROLIEiJ_G0019726	Pop1	100	91.196	Mus_caroli
ENSRNOG00000005243	Pop1	100	91.100	ENSMUSG00000022325	Pop1	100	91.100	Mus_musculus
ENSRNOG00000005243	Pop1	100	90.049	MGP_PahariEiJ_G0019735	Pop1	100	90.049	Mus_pahari
ENSRNOG00000005243	Pop1	100	90.335	MGP_SPRETEiJ_G0020622	Pop1	100	90.335	Mus_spretus
ENSRNOG00000005243	Pop1	100	72.860	ENSMPUG00000015250	POP1	100	72.860	Mustela_putorius_furo
ENSRNOG00000005243	Pop1	100	71.373	ENSMLUG00000010204	POP1	100	71.373	Myotis_lucifugus
ENSRNOG00000005243	Pop1	100	82.728	ENSNGAG00000001582	Pop1	100	82.826	Nannospalax_galili
ENSRNOG00000005243	Pop1	89	47.403	ENSNBRG00000002356	pop1	94	47.380	Neolamprologus_brichardi
ENSRNOG00000005243	Pop1	100	77.344	ENSNLEG00000002541	POP1	100	77.344	Nomascus_leucogenys
ENSRNOG00000005243	Pop1	87	68.571	ENSMEUG00000003118	POP1	92	68.571	Notamacropus_eugenii
ENSRNOG00000005243	Pop1	100	73.973	ENSOPRG00000007667	POP1	100	73.973	Ochotona_princeps
ENSRNOG00000005243	Pop1	100	74.682	ENSODEG00000003984	POP1	100	74.682	Octodon_degus
ENSRNOG00000005243	Pop1	100	47.126	ENSONIG00000016445	pop1	100	47.126	Oreochromis_niloticus
ENSRNOG00000005243	Pop1	61	68.293	ENSOANG00000001278	-	94	68.293	Ornithorhynchus_anatinus
ENSRNOG00000005243	Pop1	100	73.786	ENSOCUG00000017400	POP1	100	73.786	Oryctolagus_cuniculus
ENSRNOG00000005243	Pop1	92	47.794	ENSORLG00000002839	pop1	100	45.977	Oryzias_latipes
ENSRNOG00000005243	Pop1	90	47.665	ENSORLG00020022450	POP1	96	47.558	Oryzias_latipes_hni
ENSRNOG00000005243	Pop1	92	48.739	ENSORLG00015012746	POP1	100	46.257	Oryzias_latipes_hsok
ENSRNOG00000005243	Pop1	100	46.184	ENSOMEG00000006915	pop1	99	45.695	Oryzias_melastigma
ENSRNOG00000005243	Pop1	100	74.414	ENSOGAG00000001466	POP1	100	74.414	Otolemur_garnettii
ENSRNOG00000005243	Pop1	100	77.832	ENSPPAG00000018410	POP1	100	77.832	Pan_paniscus
ENSRNOG00000005243	Pop1	100	74.951	ENSPPRG00000005002	POP1	100	74.951	Panthera_pardus
ENSRNOG00000005243	Pop1	100	75.146	ENSPTIG00000016527	POP1	100	75.146	Panthera_tigris_altaica
ENSRNOG00000005243	Pop1	100	77.832	ENSPTRG00000020458	POP1	100	77.832	Pan_troglodytes
ENSRNOG00000005243	Pop1	100	77.539	ENSPANG00000009704	POP1	100	77.539	Papio_anubis
ENSRNOG00000005243	Pop1	100	48.502	ENSPKIG00000016325	POP1	100	48.502	Paramormyrops_kingsleyae
ENSRNOG00000005243	Pop1	100	61.589	ENSPSIG00000012343	POP1	100	61.589	Pelodiscus_sinensis
ENSRNOG00000005243	Pop1	90	48.550	ENSPMGG00000022253	POP1	95	48.507	Periophthalmus_magnuspinnatus
ENSRNOG00000005243	Pop1	99	84.115	ENSPEMG00000023633	Pop1	100	84.115	Peromyscus_maniculatus_bairdii
ENSRNOG00000005243	Pop1	90	44.068	ENSPMAG00000003209	POP1	100	44.068	Petromyzon_marinus
ENSRNOG00000005243	Pop1	100	64.050	ENSPCIG00000012216	POP1	100	64.244	Phascolarctos_cinereus
ENSRNOG00000005243	Pop1	100	46.000	ENSPFOG00000012490	POP1	100	45.810	Poecilia_formosa
ENSRNOG00000005243	Pop1	100	46.286	ENSPLAG00000004646	POP1	100	46.095	Poecilia_latipinna
ENSRNOG00000005243	Pop1	100	46.190	ENSPMEG00000019592	POP1	100	46.000	Poecilia_mexicana
ENSRNOG00000005243	Pop1	100	45.733	ENSPREG00000020951	POP1	100	45.229	Poecilia_reticulata
ENSRNOG00000005243	Pop1	100	77.441	ENSPPYG00000018777	POP1	100	77.441	Pongo_abelii
ENSRNOG00000005243	Pop1	100	69.561	ENSPCAG00000016662	POP1	100	69.561	Procavia_capensis
ENSRNOG00000005243	Pop1	100	76.321	ENSPCOG00000019420	POP1	100	76.517	Propithecus_coquereli
ENSRNOG00000005243	Pop1	100	74.439	ENSPVAG00000014468	POP1	100	74.439	Pteropus_vampyrus
ENSRNOG00000005243	Pop1	89	47.883	ENSPNYG00000004476	pop1	95	47.905	Pundamilia_nyererei
ENSRNOG00000005243	Pop1	100	43.796	ENSPNAG00000000265	pop1	100	43.796	Pygocentrus_nattereri
ENSRNOG00000005243	Pop1	100	77.441	ENSRBIG00000007996	POP1	100	77.441	Rhinopithecus_bieti
ENSRNOG00000005243	Pop1	100	77.441	ENSRROG00000012334	POP1	100	77.441	Rhinopithecus_roxellana
ENSRNOG00000005243	Pop1	99	76.680	ENSSBOG00000020830	POP1	100	76.680	Saimiri_boliviensis_boliviensis
ENSRNOG00000005243	Pop1	100	63.747	ENSSHAG00000000296	POP1	100	63.747	Sarcophilus_harrisii
ENSRNOG00000005243	Pop1	100	46.923	ENSSFOG00015007429	pop1	99	46.648	Scleropages_formosus
ENSRNOG00000005243	Pop1	86	50.459	ENSSMAG00000010467	POP1	98	45.697	Scophthalmus_maximus
ENSRNOG00000005243	Pop1	100	44.023	ENSSDUG00000007817	POP1	100	44.929	Seriola_dumerili
ENSRNOG00000005243	Pop1	100	44.381	ENSSLDG00000012565	POP1	100	44.739	Seriola_lalandi_dorsalis
ENSRNOG00000005243	Pop1	100	56.573	ENSSPUG00000003550	-	100	57.032	Sphenodon_punctatus
ENSRNOG00000005243	Pop1	90	48.000	ENSSPAG00000014955	pop1	94	47.953	Stegastes_partitus
ENSRNOG00000005243	Pop1	100	74.926	ENSSSCG00000006078	POP1	100	74.926	Sus_scrofa
ENSRNOG00000005243	Pop1	92	55.508	ENSTGUG00000012011	-	100	55.508	Taeniopygia_guttata
ENSRNOG00000005243	Pop1	91	46.652	ENSTRUG00000010856	pop1	94	45.983	Takifugu_rubripes
ENSRNOG00000005243	Pop1	94	46.169	ENSTNIG00000013297	pop1	100	46.920	Tetraodon_nigroviridis
ENSRNOG00000005243	Pop1	95	73.770	ENSTBEG00000014214	POP1	99	73.770	Tupaia_belangeri
ENSRNOG00000005243	Pop1	100	73.633	ENSTTRG00000016071	POP1	100	73.633	Tursiops_truncatus
ENSRNOG00000005243	Pop1	99	69.960	ENSUAMG00000017309	POP1	100	69.960	Ursus_americanus
ENSRNOG00000005243	Pop1	91	83.401	ENSUMAG00000016952	POP1	100	83.401	Ursus_maritimus
ENSRNOG00000005243	Pop1	83	84.672	ENSVPAG00000008278	POP1	82	84.672	Vicugna_pacos
ENSRNOG00000005243	Pop1	100	73.242	ENSVVUG00000010994	POP1	100	73.242	Vulpes_vulpes
ENSRNOG00000005243	Pop1	100	41.659	ENSXCOG00000017043	POP1	100	42.264	Xiphophorus_couchianus
ENSRNOG00000005243	Pop1	100	45.992	ENSXMAG00000002472	POP1	100	45.802	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000171	ribonuclease MRP activity	21873635.	IBA	Function
GO:0000171	ribonuclease MRP activity	-	ISO	Function
GO:0000172	ribonuclease MRP complex	21873635.	IBA	Component
GO:0000172	ribonuclease MRP complex	-	ISO	Component
GO:0001682	tRNA 5'-leader removal	-	IEA	Process
GO:0001682	tRNA 5'-leader removal	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0004526	ribonuclease P activity	21873635.	IBA	Function
GO:0004526	ribonuclease P activity	-	ISO	Function
GO:0004526	ribonuclease P activity	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005655	nucleolar ribonuclease P complex	21873635.	IBA	Component
GO:0005655	nucleolar ribonuclease P complex	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0008033	tRNA processing	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0016078	tRNA catabolic process	-	IEA	Process
GO:0016078	tRNA catabolic process	-	ISO	Process
GO:0030681	multimeric ribonuclease P complex	-	ISO	Component
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process