EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005433 (Gene tree)
Gene ID: 297483
Gene Symbol: Shq1
Alias: LOC297483|MGC187748|RGD1310610
Full Name: SHQ1%2C H/ACA ribonucleoprotein assembly factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 94940 bases
Position: chr4:133037014-133131953
Accession: 1310610
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000070645	SHQ1	PF04925.15	6.8e-69	1	1
ENSRNOP00000054569	SHQ1	PF04925.15	9.4e-69	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000089177	-	2658	-	ENSRNOP00000070645	514 (aa)	-	A0A0G2JYG4
ENSRNOT00000057758	-	2235	XM_008763162	ENSRNOP00000054569	603 (aa)	XP_008761384	B4F784

Gene Model

Click here to download ENSRNOG00000005433's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005433's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005433	Shq1	99	72.637	ENSG00000144736	SHQ1	100	82.000	Homo_sapiens
ENSRNOG00000005433	Shq1	100	73.267	ENSAMEG00000015140	SHQ1	100	72.607	Ailuropoda_melanoleuca
ENSRNOG00000005433	Shq1	72	60.690	ENSACIG00000021249	shq1	71	61.149	Amphilophus_citrinellus
ENSRNOG00000005433	Shq1	72	62.014	ENSAOCG00000023311	shq1	70	62.014	Amphiprion_ocellaris
ENSRNOG00000005433	Shq1	72	61.785	ENSAPEG00000021686	shq1	70	61.785	Amphiprion_percula
ENSRNOG00000005433	Shq1	72	61.327	ENSATEG00000008475	shq1	71	60.870	Anabas_testudineus
ENSRNOG00000005433	Shq1	75	67.184	ENSAPLG00000013926	SHQ1	89	67.627	Anas_platyrhynchos
ENSRNOG00000005433	Shq1	71	68.765	ENSACAG00000014809	SHQ1	81	61.861	Anolis_carolinensis
ENSRNOG00000005433	Shq1	97	56.293	ENSANAG00000030500	-	98	53.898	Aotus_nancymaae
ENSRNOG00000005433	Shq1	99	73.179	ENSANAG00000029241	SHQ1	99	71.689	Aotus_nancymaae
ENSRNOG00000005433	Shq1	73	58.652	ENSACLG00000023077	shq1	74	55.765	Astatotilapia_calliptera
ENSRNOG00000005433	Shq1	71	55.093	ENSAMXG00000043822	shq1	76	54.853	Astyanax_mexicanus
ENSRNOG00000005433	Shq1	100	70.724	ENSBTAG00000005436	SHQ1	100	70.724	Bos_taurus
ENSRNOG00000005433	Shq1	72	33.559	WBGene00021655	Y48A5A.1	97	34.009	Caenorhabditis_elegans
ENSRNOG00000005433	Shq1	99	71.310	ENSCJAG00000015131	SHQ1	99	70.315	Callithrix_jacchus
ENSRNOG00000005433	Shq1	100	72.277	ENSCAFG00000006434	SHQ1	99	72.442	Canis_familiaris
ENSRNOG00000005433	Shq1	100	72.277	ENSCAFG00020016743	SHQ1	99	72.442	Canis_lupus_dingo
ENSRNOG00000005433	Shq1	100	70.888	ENSCHIG00000012271	SHQ1	91	70.752	Capra_hircus
ENSRNOG00000005433	Shq1	98	69.140	ENSTSYG00000014439	SHQ1	99	69.140	Carlito_syrichta
ENSRNOG00000005433	Shq1	98	60.277	ENSCAPG00000009343	SHQ1	96	88.961	Cavia_aperea
ENSRNOG00000005433	Shq1	98	71.173	ENSCPOG00000011443	SHQ1	99	71.289	Cavia_porcellus
ENSRNOG00000005433	Shq1	96	65.873	ENSCCAG00000027080	SHQ1	98	61.681	Cebus_capucinus
ENSRNOG00000005433	Shq1	96	58.648	ENSCCAG00000036087	-	97	55.161	Cebus_capucinus
ENSRNOG00000005433	Shq1	100	71.546	ENSCATG00000041238	SHQ1	100	70.540	Cercocebus_atys
ENSRNOG00000005433	Shq1	99	70.772	ENSCLAG00000004206	SHQ1	99	70.936	Chinchilla_lanigera
ENSRNOG00000005433	Shq1	100	67.946	ENSCSAG00000011514	SHQ1	100	66.794	Chlorocebus_sabaeus
ENSRNOG00000005433	Shq1	60	68.627	ENSCHOG00000003273	-	100	71.594	Choloepus_hoffmanni
ENSRNOG00000005433	Shq1	94	59.965	ENSCPBG00000006441	SHQ1	93	60.485	Chrysemys_picta_bellii
ENSRNOG00000005433	Shq1	66	41.895	ENSCING00000008013	-	95	40.091	Ciona_intestinalis
ENSRNOG00000005433	Shq1	66	41.750	ENSCSAVG00000002332	-	98	39.509	Ciona_savignyi
ENSRNOG00000005433	Shq1	99	71.973	ENSCANG00000039295	SHQ1	99	70.957	Colobus_angolensis_palliatus
ENSRNOG00000005433	Shq1	91	93.852	ENSCGRG00001012583	Shq1	100	93.852	Cricetulus_griseus_chok1gshd
ENSRNOG00000005433	Shq1	91	93.852	ENSCGRG00000009849	Shq1	100	93.852	Cricetulus_griseus_crigri
ENSRNOG00000005433	Shq1	69	61.575	ENSCSEG00000007829	shq1	71	60.398	Cynoglossus_semilaevis
ENSRNOG00000005433	Shq1	77	58.190	ENSCVAG00000020049	shq1	93	48.911	Cyprinodon_variegatus
ENSRNOG00000005433	Shq1	72	59.497	ENSDARG00000058522	shq1	73	58.957	Danio_rerio
ENSRNOG00000005433	Shq1	100	70.540	ENSDNOG00000033937	SHQ1	100	70.909	Dasypus_novemcinctus
ENSRNOG00000005433	Shq1	89	65.498	ENSETEG00000005766	SHQ1	99	60.297	Echinops_telfairi
ENSRNOG00000005433	Shq1	72	49.333	ENSEBUG00000005445	shq1	79	48.876	Eptatretus_burgeri
ENSRNOG00000005433	Shq1	100	73.762	ENSEASG00005002237	SHQ1	100	73.762	Equus_asinus_asinus
ENSRNOG00000005433	Shq1	89	79.044	ENSECAG00000015673	SHQ1	92	79.044	Equus_caballus
ENSRNOG00000005433	Shq1	100	68.903	ENSEEUG00000010568	SHQ1	100	68.903	Erinaceus_europaeus
ENSRNOG00000005433	Shq1	69	61.391	ENSELUG00000003476	shq1	81	58.824	Esox_lucius
ENSRNOG00000005433	Shq1	89	79.221	ENSFCAG00000012781	SHQ1	100	72.442	Felis_catus
ENSRNOG00000005433	Shq1	93	59.052	ENSFALG00000013428	SHQ1	94	60.554	Ficedula_albicollis
ENSRNOG00000005433	Shq1	99	68.051	ENSFDAG00000005595	SHQ1	91	67.200	Fukomys_damarensis
ENSRNOG00000005433	Shq1	72	60.820	ENSFHEG00000017552	shq1	73	59.132	Fundulus_heteroclitus
ENSRNOG00000005433	Shq1	66	59.045	ENSGMOG00000007350	shq1	100	58.794	Gadus_morhua
ENSRNOG00000005433	Shq1	75	68.222	ENSGALG00000007798	SHQ1	73	68.222	Gallus_gallus
ENSRNOG00000005433	Shq1	66	59.698	ENSGACG00000011797	shq1	100	60.453	Gasterosteus_aculeatus
ENSRNOG00000005433	Shq1	99	72.471	ENSGGOG00000034818	SHQ1	99	70.957	Gorilla_gorilla
ENSRNOG00000005433	Shq1	73	58.427	ENSHBUG00000010857	shq1	73	59.152	Haplochromis_burtoni
ENSRNOG00000005433	Shq1	99	70.323	ENSHGLG00000003637	SHQ1	91	68.285	Heterocephalus_glaber_female
ENSRNOG00000005433	Shq1	99	70.550	ENSHGLG00100011957	SHQ1	91	70.549	Heterocephalus_glaber_male
ENSRNOG00000005433	Shq1	89	50.652	ENSHCOG00000010799	shq1	73	58.161	Hippocampus_comes
ENSRNOG00000005433	Shq1	72	60.046	ENSIPUG00000001247	shq1	74	60.046	Ictalurus_punctatus
ENSRNOG00000005433	Shq1	98	68.803	ENSSTOG00000010043	SHQ1	100	69.815	Ictidomys_tridecemlineatus
ENSRNOG00000005433	Shq1	99	75.707	ENSJJAG00000017611	Shq1	99	86.475	Jaculus_jaculus
ENSRNOG00000005433	Shq1	72	60.364	ENSKMAG00000004457	shq1	75	59.020	Kryptolebias_marmoratus
ENSRNOG00000005433	Shq1	73	66.893	ENSLACG00000014243	SHQ1	87	53.507	Latimeria_chalumnae
ENSRNOG00000005433	Shq1	92	56.140	ENSLOCG00000009970	shq1	98	55.614	Lepisosteus_oculatus
ENSRNOG00000005433	Shq1	100	71.382	ENSMFAG00000039148	SHQ1	100	70.704	Macaca_fascicularis
ENSRNOG00000005433	Shq1	99	51.821	ENSMFAG00000037396	-	99	50.408	Macaca_fascicularis
ENSRNOG00000005433	Shq1	100	67.630	ENSMMUG00000009571	SHQ1	96	68.917	Macaca_mulatta
ENSRNOG00000005433	Shq1	99	51.656	ENSMMUG00000021761	-	99	50.329	Macaca_mulatta
ENSRNOG00000005433	Shq1	100	71.382	ENSMNEG00000032667	SHQ1	100	70.704	Macaca_nemestrina
ENSRNOG00000005433	Shq1	100	71.546	ENSMLEG00000038493	SHQ1	100	70.540	Mandrillus_leucophaeus
ENSRNOG00000005433	Shq1	75	59.519	ENSMAMG00000023432	shq1	68	59.243	Mastacembelus_armatus
ENSRNOG00000005433	Shq1	73	58.652	ENSMZEG00005008649	shq1	73	59.375	Maylandia_zebra
ENSRNOG00000005433	Shq1	75	67.111	ENSMGAG00000009640	SHQ1	94	55.556	Meleagris_gallopavo
ENSRNOG00000005433	Shq1	100	84.909	ENSMAUG00000022030	Shq1	100	94.262	Mesocricetus_auratus
ENSRNOG00000005433	Shq1	99	71.336	ENSMICG00000009224	SHQ1	99	70.033	Microcebus_murinus
ENSRNOG00000005433	Shq1	100	81.260	ENSMOCG00000017836	Shq1	100	94.262	Microtus_ochrogaster
ENSRNOG00000005433	Shq1	72	60.000	ENSMMOG00000010569	shq1	73	58.391	Mola_mola
ENSRNOG00000005433	Shq1	79	69.038	ENSMODG00000003926	SHQ1	78	72.769	Monodelphis_domestica
ENSRNOG00000005433	Shq1	73	60.722	ENSMALG00000008870	shq1	73	60.497	Monopterus_albus
ENSRNOG00000005433	Shq1	91	95.902	MGP_CAROLIEiJ_G0028689	Shq1	100	95.902	Mus_caroli
ENSRNOG00000005433	Shq1	91	95.902	ENSMUSG00000035378	Shq1	100	95.902	Mus_musculus
ENSRNOG00000005433	Shq1	91	95.902	MGP_PahariEiJ_G0022440	Shq1	100	95.902	Mus_pahari
ENSRNOG00000005433	Shq1	91	95.492	MGP_SPRETEiJ_G0029717	Shq1	100	95.492	Mus_spretus
ENSRNOG00000005433	Shq1	98	72.773	ENSMPUG00000017006	SHQ1	96	72.437	Mustela_putorius_furo
ENSRNOG00000005433	Shq1	98	64.579	ENSMLUG00000013539	SHQ1	98	66.848	Myotis_lucifugus
ENSRNOG00000005433	Shq1	99	70.854	ENSNGAG00000023317	Shq1	100	70.519	Nannospalax_galili
ENSRNOG00000005433	Shq1	68	57.303	ENSNBRG00000024004	shq1	68	58.217	Neolamprologus_brichardi
ENSRNOG00000005433	Shq1	98	74.539	ENSNLEG00000002731	SHQ1	98	72.697	Nomascus_leucogenys
ENSRNOG00000005433	Shq1	79	64.815	ENSMEUG00000009350	-	88	64.815	Notamacropus_eugenii
ENSRNOG00000005433	Shq1	75	82.198	ENSODEG00000009192	SHQ1	99	81.818	Octodon_degus
ENSRNOG00000005433	Shq1	73	58.202	ENSONIG00000020264	shq1	73	58.929	Oreochromis_niloticus
ENSRNOG00000005433	Shq1	98	71.476	ENSOCUG00000016695	SHQ1	98	71.144	Oryctolagus_cuniculus
ENSRNOG00000005433	Shq1	71	59.954	ENSORLG00000023538	shq1	80	58.072	Oryzias_latipes
ENSRNOG00000005433	Shq1	71	60.648	ENSORLG00020003697	shq1	79	58.744	Oryzias_latipes_hni
ENSRNOG00000005433	Shq1	71	60.185	ENSORLG00015021040	shq1	78	59.268	Oryzias_latipes_hsok
ENSRNOG00000005433	Shq1	71	60.880	ENSOMEG00000001225	shq1	80	58.628	Oryzias_melastigma
ENSRNOG00000005433	Shq1	98	72.879	ENSOGAG00000003898	SHQ1	100	71.523	Otolemur_garnettii
ENSRNOG00000005433	Shq1	99	70.181	ENSOARG00000009547	SHQ1	99	70.675	Ovis_aries
ENSRNOG00000005433	Shq1	97	61.111	ENSPPAG00000043263	-	99	53.355	Pan_paniscus
ENSRNOG00000005433	Shq1	99	72.637	ENSPPAG00000027714	SHQ1	99	71.287	Pan_paniscus
ENSRNOG00000005433	Shq1	100	73.597	ENSPPRG00000004769	SHQ1	100	73.102	Panthera_pardus
ENSRNOG00000005433	Shq1	98	70.252	ENSPTIG00000011478	SHQ1	100	68.977	Panthera_tigris_altaica
ENSRNOG00000005433	Shq1	99	72.637	ENSPTRG00000015106	SHQ1	99	71.287	Pan_troglodytes
ENSRNOG00000005433	Shq1	97	60.317	ENSPTRG00000048303	-	99	52.700	Pan_troglodytes
ENSRNOG00000005433	Shq1	100	71.382	ENSPANG00000002881	SHQ1	100	71.031	Papio_anubis
ENSRNOG00000005433	Shq1	71	58.275	ENSPKIG00000021517	shq1	78	56.319	Paramormyrops_kingsleyae
ENSRNOG00000005433	Shq1	98	59.068	ENSPSIG00000005536	SHQ1	89	63.419	Pelodiscus_sinensis
ENSRNOG00000005433	Shq1	73	58.542	ENSPMGG00000008838	shq1	73	58.314	Periophthalmus_magnuspinnatus
ENSRNOG00000005433	Shq1	100	85.075	ENSPEMG00000000251	Shq1	100	94.262	Peromyscus_maniculatus_bairdii
ENSRNOG00000005433	Shq1	72	56.532	ENSPMAG00000005372	shq1	99	56.757	Petromyzon_marinus
ENSRNOG00000005433	Shq1	72	59.050	ENSPFOG00000003118	shq1	81	58.259	Poecilia_formosa
ENSRNOG00000005433	Shq1	68	57.550	ENSPMEG00000011076	shq1	78	56.389	Poecilia_mexicana
ENSRNOG00000005433	Shq1	63	57.669	ENSPREG00000000591	shq1	75	56.892	Poecilia_reticulata
ENSRNOG00000005433	Shq1	99	71.642	ENSPPYG00000013717	SHQ1	99	70.627	Pongo_abelii
ENSRNOG00000005433	Shq1	96	71.429	ENSPCAG00000009035	SHQ1	99	70.924	Procavia_capensis
ENSRNOG00000005433	Shq1	100	70.147	ENSPCOG00000008415	SHQ1	98	71.523	Propithecus_coquereli
ENSRNOG00000005433	Shq1	98	73.490	ENSPVAG00000017392	SHQ1	99	73.322	Pteropus_vampyrus
ENSRNOG00000005433	Shq1	73	58.652	ENSPNYG00000003878	shq1	72	59.551	Pundamilia_nyererei
ENSRNOG00000005433	Shq1	72	59.508	ENSPNAG00000026840	shq1	73	58.407	Pygocentrus_nattereri
ENSRNOG00000005433	Shq1	99	67.881	ENSRBIG00000026280	SHQ1	99	66.886	Rhinopithecus_bieti
ENSRNOG00000005433	Shq1	99	71.310	ENSRROG00000034126	SHQ1	99	70.462	Rhinopithecus_roxellana
ENSRNOG00000005433	Shq1	99	64.013	ENSSBOG00000021038	SHQ1	98	64.081	Saimiri_boliviensis_boliviensis
ENSRNOG00000005433	Shq1	88	63.569	ENSSHAG00000015077	SHQ1	96	60.000	Sarcophilus_harrisii
ENSRNOG00000005433	Shq1	73	62.557	ENSSFOG00015016241	shq1	78	62.557	Scleropages_formosus
ENSRNOG00000005433	Shq1	74	61.969	ENSSMAG00000016151	shq1	72	61.745	Scophthalmus_maximus
ENSRNOG00000005433	Shq1	71	61.060	ENSSDUG00000011986	shq1	71	60.899	Seriola_dumerili
ENSRNOG00000005433	Shq1	69	61.836	ENSSLDG00000013908	shq1	71	60.633	Seriola_lalandi_dorsalis
ENSRNOG00000005433	Shq1	98	57.886	ENSSARG00000007119	SHQ1	98	55.446	Sorex_araneus
ENSRNOG00000005433	Shq1	87	59.956	ENSSPUG00000011526	-	85	61.050	Sphenodon_punctatus
ENSRNOG00000005433	Shq1	98	69.732	ENSSSCG00000011518	SHQ1	98	69.064	Sus_scrofa
ENSRNOG00000005433	Shq1	92	58.773	ENSTGUG00000009933	SHQ1	99	59.582	Taeniopygia_guttata
ENSRNOG00000005433	Shq1	69	58.612	ENSTRUG00000009446	shq1	75	57.461	Takifugu_rubripes
ENSRNOG00000005433	Shq1	69	56.490	ENSTNIG00000007354	shq1	98	55.357	Tetraodon_nigroviridis
ENSRNOG00000005433	Shq1	79	89.362	ENSTBEG00000011295	SHQ1	78	89.362	Tupaia_belangeri
ENSRNOG00000005433	Shq1	97	72.297	ENSTTRG00000005320	SHQ1	98	72.973	Tursiops_truncatus
ENSRNOG00000005433	Shq1	99	71.285	ENSUMAG00000024031	SHQ1	99	70.500	Ursus_maritimus
ENSRNOG00000005433	Shq1	92	65.336	ENSVPAG00000004880	SHQ1	100	60.784	Vicugna_pacos
ENSRNOG00000005433	Shq1	100	72.112	ENSVVUG00000013906	SHQ1	99	72.277	Vulpes_vulpes
ENSRNOG00000005433	Shq1	73	65.385	ENSXETG00000032215	shq1	72	64.944	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000493	box H/ACA snoRNP assembly	21873635.	IBA	Process
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0022618	ribonucleoprotein complex assembly	-	ISO	Process
GO:0043065	positive regulation of apoptotic process	-	IEA	Process
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0051082	unfolded protein binding	21873635.	IBA	Function
GO:2000233	negative regulation of rRNA processing	-	IEA	Process
GO:2000233	negative regulation of rRNA processing	-	ISO	Process