EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005468 (Gene tree)
Gene ID: 312182
Gene Symbol: Rbm28
Alias: LOC312182
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 39697 bases
Position: chr4:56398769-56438465
Accession: 1311336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000059579	RRM_1	PF00076.22	1.6e-57	1	4
ENSRNOP00000059579	RRM_1	PF00076.22	1.6e-57	2	4
ENSRNOP00000059579	RRM_1	PF00076.22	1.6e-57	3	4
ENSRNOP00000059579	RRM_1	PF00076.22	1.6e-57	4	4
ENSRNOP00000069435	RRM_1	PF00076.22	5.7e-55	1	4
ENSRNOP00000069435	RRM_1	PF00076.22	5.7e-55	2	4
ENSRNOP00000069435	RRM_1	PF00076.22	5.7e-55	3	4
ENSRNOP00000069435	RRM_1	PF00076.22	5.7e-55	4	4

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000064007	-	3260	XM_006236190	ENSRNOP00000059579	753 (aa)	XP_006236252	D4A5K7
ENSRNOT00000077079	-	3631	-	ENSRNOP00000069435	700 (aa)	-	A0A0G2JVD0

Gene Model

Click here to download ENSRNOG00000005468's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005468's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005468	Rbm28	82	97.500	ENSG00000106344	RBM28	100	97.500	Homo_sapiens
ENSRNOG00000005468	Rbm28	84	59.242	ENSAPOG00000015512	rbm28	100	51.492	Acanthochromis_polyacanthus
ENSRNOG00000005468	Rbm28	77	83.654	ENSAMEG00000004776	RBM28	92	90.625	Ailuropoda_melanoleuca
ENSRNOG00000005468	Rbm28	56	55.370	ENSACIG00000023153	rbm28	91	55.370	Amphilophus_citrinellus
ENSRNOG00000005468	Rbm28	84	59.716	ENSAOCG00000000462	rbm28	100	51.166	Amphiprion_ocellaris
ENSRNOG00000005468	Rbm28	84	60.190	ENSAPEG00000012996	rbm28	100	51.693	Amphiprion_percula
ENSRNOG00000005468	Rbm28	58	51.271	ENSATEG00000001672	rbm28	100	48.420	Anabas_testudineus
ENSRNOG00000005468	Rbm28	100	80.159	ENSANAG00000033922	RBM28	100	80.159	Aotus_nancymaae
ENSRNOG00000005468	Rbm28	100	49.242	ENSACLG00000025024	rbm28	100	49.873	Astatotilapia_calliptera
ENSRNOG00000005468	Rbm28	58	54.933	ENSAMXG00000000763	rbm28	99	57.763	Astyanax_mexicanus
ENSRNOG00000005468	Rbm28	82	97.500	ENSBTAG00000017001	RBM28	100	97.500	Bos_taurus
ENSRNOG00000005468	Rbm28	100	78.375	ENSCJAG00000017731	RBM28	100	78.375	Callithrix_jacchus
ENSRNOG00000005468	Rbm28	100	79.233	ENSCAFG00000001667	RBM28	100	79.233	Canis_familiaris
ENSRNOG00000005468	Rbm28	100	79.233	ENSCAFG00020021648	RBM28	100	79.233	Canis_lupus_dingo
ENSRNOG00000005468	Rbm28	100	77.249	ENSCHIG00000014146	RBM28	100	76.852	Capra_hircus
ENSRNOG00000005468	Rbm28	100	77.195	ENSTSYG00000002892	RBM28	100	92.500	Carlito_syrichta
ENSRNOG00000005468	Rbm28	82	60.972	ENSCAPG00000013218	RBM28	98	60.714	Cavia_aperea
ENSRNOG00000005468	Rbm28	100	79.447	ENSCPOG00000006253	RBM28	100	79.183	Cavia_porcellus
ENSRNOG00000005468	Rbm28	100	79.079	ENSCCAG00000035105	RBM28	100	78.947	Cebus_capucinus
ENSRNOG00000005468	Rbm28	100	79.161	ENSCATG00000040497	RBM28	100	95.000	Cercocebus_atys
ENSRNOG00000005468	Rbm28	100	76.058	ENSCLAG00000003707	RBM28	100	75.794	Chinchilla_lanigera
ENSRNOG00000005468	Rbm28	100	79.211	ENSCSAG00000010161	RBM28	100	79.342	Chlorocebus_sabaeus
ENSRNOG00000005468	Rbm28	57	86.290	ENSCHOG00000001994	-	63	86.290	Choloepus_hoffmanni
ENSRNOG00000005468	Rbm28	51	61.785	ENSCPBG00000018088	RBM28	87	59.315	Chrysemys_picta_bellii
ENSRNOG00000005468	Rbm28	68	41.250	ENSCING00000009238	-	83	39.060	Ciona_intestinalis
ENSRNOG00000005468	Rbm28	80	97.500	ENSCANG00000038397	RBM28	100	97.500	Colobus_angolensis_palliatus
ENSRNOG00000005468	Rbm28	96	89.778	ENSCGRG00001021278	Rbm28	100	82.609	Cricetulus_griseus_chok1gshd
ENSRNOG00000005468	Rbm28	100	84.404	ENSCGRG00000005098	Rbm28	100	84.404	Cricetulus_griseus_crigri
ENSRNOG00000005468	Rbm28	100	49.170	ENSCSEG00000004212	rbm28	100	49.487	Cynoglossus_semilaevis
ENSRNOG00000005468	Rbm28	58	55.234	ENSCVAG00000010493	rbm28	99	50.000	Cyprinodon_variegatus
ENSRNOG00000005468	Rbm28	100	47.642	ENSDARG00000025332	rbm28	100	46.364	Danio_rerio
ENSRNOG00000005468	Rbm28	100	77.470	ENSDNOG00000001124	RBM28	100	77.602	Dasypus_novemcinctus
ENSRNOG00000005468	Rbm28	65	80.684	ENSDORG00000004184	Rbm28	97	80.885	Dipodomys_ordii
ENSRNOG00000005468	Rbm28	67	39.448	FBgn0260456	CG4806	69	38.566	Drosophila_melanogaster
ENSRNOG00000005468	Rbm28	100	68.206	ENSETEG00000007130	RBM28	99	68.338	Echinops_telfairi
ENSRNOG00000005468	Rbm28	83	46.991	ENSEBUG00000004419	rbm28	98	41.656	Eptatretus_burgeri
ENSRNOG00000005468	Rbm28	100	78.255	ENSEASG00005008528	RBM28	100	78.125	Equus_asinus_asinus
ENSRNOG00000005468	Rbm28	100	77.893	ENSECAG00000007745	RBM28	100	77.893	Equus_caballus
ENSRNOG00000005468	Rbm28	100	71.129	ENSEEUG00000002389	RBM28	100	71.260	Erinaceus_europaeus
ENSRNOG00000005468	Rbm28	100	51.399	ENSELUG00000020602	rbm28	100	51.519	Esox_lucius
ENSRNOG00000005468	Rbm28	82	97.500	ENSFCAG00000000946	RBM28	100	97.500	Felis_catus
ENSRNOG00000005468	Rbm28	100	80.795	ENSFDAG00000010169	RBM28	100	80.265	Fukomys_damarensis
ENSRNOG00000005468	Rbm28	58	51.693	ENSGMOG00000007091	rbm28	99	46.438	Gadus_morhua
ENSRNOG00000005468	Rbm28	58	55.830	ENSGAFG00000004802	rbm28	97	55.580	Gambusia_affinis
ENSRNOG00000005468	Rbm28	58	55.862	ENSGACG00000012612	rbm28	100	50.066	Gasterosteus_aculeatus
ENSRNOG00000005468	Rbm28	82	69.849	ENSGAGG00000008873	RBM28	80	79.121	Gopherus_agassizii
ENSRNOG00000005468	Rbm28	95	78.255	ENSGGOG00000004644	RBM28	97	78.393	Gorilla_gorilla
ENSRNOG00000005468	Rbm28	90	50.071	ENSHBUG00000009611	rbm28	97	49.727	Haplochromis_burtoni
ENSRNOG00000005468	Rbm28	100	79.630	ENSHGLG00000005409	RBM28	100	79.630	Heterocephalus_glaber_female
ENSRNOG00000005468	Rbm28	100	79.630	ENSHGLG00100016458	RBM28	100	79.630	Heterocephalus_glaber_male
ENSRNOG00000005468	Rbm28	82	48.182	ENSHCOG00000010597	rbm28	99	41.753	Hippocampus_comes
ENSRNOG00000005468	Rbm28	56	49.406	ENSIPUG00000007103	rbm28	95	46.626	Ictalurus_punctatus
ENSRNOG00000005468	Rbm28	100	80.313	ENSSTOG00000002169	RBM28	100	80.443	Ictidomys_tridecemlineatus
ENSRNOG00000005468	Rbm28	100	72.881	ENSJJAG00000022400	Rbm28	100	73.587	Jaculus_jaculus
ENSRNOG00000005468	Rbm28	59	55.034	ENSKMAG00000013348	rbm28	99	50.654	Kryptolebias_marmoratus
ENSRNOG00000005468	Rbm28	58	56.125	ENSLBEG00000012998	rbm28	100	50.256	Labrus_bergylta
ENSRNOG00000005468	Rbm28	74	56.217	ENSLACG00000010485	-	100	56.021	Latimeria_chalumnae
ENSRNOG00000005468	Rbm28	90	63.590	ENSLOCG00000015541	rbm28	81	62.887	Lepisosteus_oculatus
ENSRNOG00000005468	Rbm28	100	78.336	ENSLAFG00000010717	RBM28	100	78.468	Loxodonta_africana
ENSRNOG00000005468	Rbm28	100	79.554	ENSMFAG00000031036	RBM28	100	95.000	Macaca_fascicularis
ENSRNOG00000005468	Rbm28	100	79.188	ENSMMUG00000007250	RBM28	100	95.000	Macaca_mulatta
ENSRNOG00000005468	Rbm28	100	78.906	ENSMNEG00000036970	RBM28	100	95.000	Macaca_nemestrina
ENSRNOG00000005468	Rbm28	90	79.281	ENSMLEG00000037717	RBM28	100	79.574	Mandrillus_leucophaeus
ENSRNOG00000005468	Rbm28	100	50.639	ENSMAMG00000008525	rbm28	100	51.252	Mastacembelus_armatus
ENSRNOG00000005468	Rbm28	93	48.444	ENSMZEG00005019625	rbm28	100	49.113	Maylandia_zebra
ENSRNOG00000005468	Rbm28	100	81.748	ENSMAUG00000002263	Rbm28	100	81.620	Mesocricetus_auratus
ENSRNOG00000005468	Rbm28	93	76.210	ENSMICG00000000107	RBM28	100	76.349	Microcebus_murinus
ENSRNOG00000005468	Rbm28	100	85.317	ENSMOCG00000014615	Rbm28	100	85.317	Microtus_ochrogaster
ENSRNOG00000005468	Rbm28	58	53.103	ENSMMOG00000008600	rbm28	100	49.896	Mola_mola
ENSRNOG00000005468	Rbm28	100	69.531	ENSMODG00000015151	RBM28	100	69.804	Monodelphis_domestica
ENSRNOG00000005468	Rbm28	89	51.681	ENSMALG00000006419	rbm28	100	47.788	Monopterus_albus
ENSRNOG00000005468	Rbm28	100	89.139	MGP_CAROLIEiJ_G0028162	Rbm28	100	89.404	Mus_caroli
ENSRNOG00000005468	Rbm28	100	89.404	ENSMUSG00000029701	Rbm28	100	89.272	Mus_musculus
ENSRNOG00000005468	Rbm28	100	89.139	MGP_PahariEiJ_G0021920	Rbm28	100	89.669	Mus_pahari
ENSRNOG00000005468	Rbm28	100	89.669	MGP_SPRETEiJ_G0029162	Rbm28	100	89.536	Mus_spretus
ENSRNOG00000005468	Rbm28	100	78.684	ENSMPUG00000006511	RBM28	100	78.684	Mustela_putorius_furo
ENSRNOG00000005468	Rbm28	100	78.113	ENSMLUG00000002186	RBM28	100	78.637	Myotis_lucifugus
ENSRNOG00000005468	Rbm28	100	76.689	ENSNGAG00000017946	-	100	76.556	Nannospalax_galili
ENSRNOG00000005468	Rbm28	100	79.338	ENSNGAG00000006480	-	100	78.278	Nannospalax_galili
ENSRNOG00000005468	Rbm28	82	97.500	ENSNLEG00000012307	RBM28	100	97.500	Nomascus_leucogenys
ENSRNOG00000005468	Rbm28	81	81.595	ENSMEUG00000009611	RBM28	91	82.099	Notamacropus_eugenii
ENSRNOG00000005468	Rbm28	90	74.038	ENSOPRG00000015140	RBM28	90	75.000	Ochotona_princeps
ENSRNOG00000005468	Rbm28	80	81.368	ENSODEG00000013217	-	87	81.368	Octodon_degus
ENSRNOG00000005468	Rbm28	100	76.190	ENSODEG00000003213	-	100	76.058	Octodon_degus
ENSRNOG00000005468	Rbm28	58	54.267	ENSONIG00000014924	rbm28	100	50.129	Oreochromis_niloticus
ENSRNOG00000005468	Rbm28	100	61.669	ENSOANG00000000815	-	100	62.500	Ornithorhynchus_anatinus
ENSRNOG00000005468	Rbm28	100	77.865	ENSOCUG00000003009	RBM28	100	77.995	Oryctolagus_cuniculus
ENSRNOG00000005468	Rbm28	58	55.405	ENSORLG00000009636	rbm28	99	50.852	Oryzias_latipes
ENSRNOG00000005468	Rbm28	58	55.281	ENSORLG00020002123	rbm28	99	51.248	Oryzias_latipes_hni
ENSRNOG00000005468	Rbm28	88	60.870	ENSORLG00015015030	rbm28	99	59.024	Oryzias_latipes_hsok
ENSRNOG00000005468	Rbm28	58	56.291	ENSOMEG00000007801	rbm28	100	51.499	Oryzias_melastigma
ENSRNOG00000005468	Rbm28	94	90.000	ENSOGAG00000006011	RBM28	100	90.000	Otolemur_garnettii
ENSRNOG00000005468	Rbm28	100	76.812	ENSOARG00000002547	RBM28	100	76.416	Ovis_aries
ENSRNOG00000005468	Rbm28	82	97.500	ENSPPAG00000041730	RBM28	100	97.500	Pan_paniscus
ENSRNOG00000005468	Rbm28	82	97.500	ENSPPRG00000004420	RBM28	100	97.500	Panthera_pardus
ENSRNOG00000005468	Rbm28	82	97.500	ENSPTIG00000008550	RBM28	100	97.500	Panthera_tigris_altaica
ENSRNOG00000005468	Rbm28	82	97.500	ENSPTRG00000019659	RBM28	100	97.500	Pan_troglodytes
ENSRNOG00000005468	Rbm28	100	78.927	ENSPANG00000022295	RBM28	100	95.000	Papio_anubis
ENSRNOG00000005468	Rbm28	99	51.553	ENSPKIG00000023453	rbm28	99	51.504	Paramormyrops_kingsleyae
ENSRNOG00000005468	Rbm28	83	56.098	ENSPMGG00000012840	rbm28	100	50.000	Periophthalmus_magnuspinnatus
ENSRNOG00000005468	Rbm28	100	83.444	ENSPEMG00000020673	Rbm28	100	83.576	Peromyscus_maniculatus_bairdii
ENSRNOG00000005468	Rbm28	100	69.737	ENSPCIG00000012810	RBM28	100	70.472	Phascolarctos_cinereus
ENSRNOG00000005468	Rbm28	86	55.349	ENSPFOG00000018209	rbm28	100	50.324	Poecilia_formosa
ENSRNOG00000005468	Rbm28	85	55.708	ENSPLAG00000016078	rbm28	96	50.065	Poecilia_latipinna
ENSRNOG00000005468	Rbm28	86	54.206	ENSPMEG00000004292	rbm28	100	49.935	Poecilia_mexicana
ENSRNOG00000005468	Rbm28	85	54.587	ENSPREG00000014287	rbm28	98	49.467	Poecilia_reticulata
ENSRNOG00000005468	Rbm28	100	79.474	ENSPPYG00000017975	RBM28	100	79.737	Pongo_abelii
ENSRNOG00000005468	Rbm28	74	73.239	ENSPCAG00000008223	RBM28	83	73.407	Procavia_capensis
ENSRNOG00000005468	Rbm28	82	97.500	ENSPCOG00000016797	RBM28	100	97.500	Propithecus_coquereli
ENSRNOG00000005468	Rbm28	77	89.767	ENSPVAG00000005443	RBM28	76	89.767	Pteropus_vampyrus
ENSRNOG00000005468	Rbm28	100	49.180	ENSPNYG00000014003	rbm28	100	50.450	Pundamilia_nyererei
ENSRNOG00000005468	Rbm28	82	97.500	ENSRBIG00000033990	RBM28	100	97.500	Rhinopithecus_bieti
ENSRNOG00000005468	Rbm28	82	97.500	ENSRROG00000040747	RBM28	100	97.500	Rhinopithecus_roxellana
ENSRNOG00000005468	Rbm28	90	77.011	ENSSBOG00000012308	RBM28	100	77.011	Saimiri_boliviensis_boliviensis
ENSRNOG00000005468	Rbm28	96	66.025	ENSSHAG00000017017	RBM28	99	64.472	Sarcophilus_harrisii
ENSRNOG00000005468	Rbm28	58	57.303	ENSSFOG00015001231	rbm28	100	52.493	Scleropages_formosus
ENSRNOG00000005468	Rbm28	58	52.381	ENSSMAG00000003885	rbm28	99	49.383	Scophthalmus_maximus
ENSRNOG00000005468	Rbm28	66	43.843	ENSSDUG00000014270	rbm28	99	52.427	Seriola_dumerili
ENSRNOG00000005468	Rbm28	58	55.895	ENSSLDG00000020099	rbm28	100	49.042	Seriola_lalandi_dorsalis
ENSRNOG00000005468	Rbm28	76	82.532	ENSSARG00000008303	RBM28	80	82.532	Sorex_araneus
ENSRNOG00000005468	Rbm28	67	69.118	ENSSPUG00000000838	RBM28	79	69.118	Sphenodon_punctatus
ENSRNOG00000005468	Rbm28	58	52.980	ENSSPAG00000023305	rbm28	100	50.204	Stegastes_partitus
ENSRNOG00000005468	Rbm28	100	77.836	ENSSSCG00000031847	RBM28	100	77.836	Sus_scrofa
ENSRNOG00000005468	Rbm28	59	55.435	ENSTRUG00000013311	rbm28	99	48.696	Takifugu_rubripes
ENSRNOG00000005468	Rbm28	99	50.843	ENSTNIG00000017962	rbm28	99	49.935	Tetraodon_nigroviridis
ENSRNOG00000005468	Rbm28	86	84.226	ENSTBEG00000012749	RBM28	86	84.226	Tupaia_belangeri
ENSRNOG00000005468	Rbm28	100	75.362	ENSTTRG00000013647	RBM28	100	75.362	Tursiops_truncatus
ENSRNOG00000005468	Rbm28	100	72.500	ENSUAMG00000006949	RBM28	100	72.895	Ursus_americanus
ENSRNOG00000005468	Rbm28	100	78.996	ENSUMAG00000005997	RBM28	100	78.996	Ursus_maritimus
ENSRNOG00000005468	Rbm28	88	69.486	ENSVPAG00000008304	RBM28	87	69.486	Vicugna_pacos
ENSRNOG00000005468	Rbm28	100	78.968	ENSVVUG00000007270	RBM28	100	78.968	Vulpes_vulpes
ENSRNOG00000005468	Rbm28	90	64.286	ENSXETG00000009271	rbm28	99	54.650	Xenopus_tropicalis
ENSRNOG00000005468	Rbm28	58	53.303	ENSXCOG00000020357	rbm28	99	50.412	Xiphophorus_couchianus
ENSRNOG00000005468	Rbm28	86	56.621	ENSXMAG00000004415	rbm28	100	50.856	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component