EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005480 (Gene tree)
Gene ID: 83807
Gene Symbol: Ybx3
Alias: Csda|Dbpa|MGC124554|RYB-A|Yb2
Full Name: Y box binding protein 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 23300 bases
Position: chr4:165606819-165630118
Accession: 621056
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000007427	CSD	PF00313.22	2.1e-26	1	1
ENSRNOP00000059241	CSD	PF00313.22	3.6e-26	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068185	-	1500	-	ENSRNOP00000059241	291 (aa)	-	D4A0L4
ENSRNOT00000007427	-	1834	-	ENSRNOP00000007427	361 (aa)	-	F1MA18

Gene Model

Click here to download ENSRNOG00000005480's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005480's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000005480	Ybx3	83	52.366	ENSRNOG00000023786	Ybx1	90	54.808
ENSRNOG00000005480	Ybx3	83	49.051	ENSRNOG00000032902	Ybx1-ps3	90	54.221

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005480	Ybx3	100	84.677	ENSG00000060138	YBX3	91	97.619	Homo_sapiens
ENSRNOG00000005480	Ybx3	96	86.080	ENSAMEG00000009393	YBX3	89	91.667	Ailuropoda_melanoleuca
ENSRNOG00000005480	Ybx3	73	98.077	ENSAPLG00000003147	YBX3	76	98.077	Anas_platyrhynchos
ENSRNOG00000005480	Ybx3	75	66.960	ENSANAG00000033366	-	77	79.268	Aotus_nancymaae
ENSRNOG00000005480	Ybx3	86	87.774	ENSANAG00000024492	-	100	90.506	Aotus_nancymaae
ENSRNOG00000005480	Ybx3	100	84.211	ENSBTAG00000009663	YBX3	83	88.179	Bos_taurus
ENSRNOG00000005480	Ybx3	96	65.724	ENSCJAG00000033824	-	88	86.076	Callithrix_jacchus
ENSRNOG00000005480	Ybx3	100	84.636	ENSCJAG00000021660	-	86	89.623	Callithrix_jacchus
ENSRNOG00000005480	Ybx3	79	93.380	ENSCAFG00000013401	YBX3	100	94.009	Canis_familiaris
ENSRNOG00000005480	Ybx3	100	81.867	ENSCAFG00020006412	YBX3	84	88.924	Canis_lupus_dingo
ENSRNOG00000005480	Ybx3	100	84.211	ENSCHIG00000010863	YBX3	88	91.054	Capra_hircus
ENSRNOG00000005480	Ybx3	79	93.380	ENSTSYG00000004204	-	96	88.571	Carlito_syrichta
ENSRNOG00000005480	Ybx3	100	72.297	ENSTSYG00000035821	-	72	95.745	Carlito_syrichta
ENSRNOG00000005480	Ybx3	79	88.811	ENSCAPG00000015039	YBX3	93	88.811	Cavia_aperea
ENSRNOG00000005480	Ybx3	80	89.726	ENSCPOG00000011329	YBX3	92	87.859	Cavia_porcellus
ENSRNOG00000005480	Ybx3	100	84.409	ENSCCAG00000016469	YBX3	85	89.623	Cebus_capucinus
ENSRNOG00000005480	Ybx3	100	83.914	ENSCATG00000034411	YBX3	85	89.308	Cercocebus_atys
ENSRNOG00000005480	Ybx3	79	90.210	ENSCLAG00000016030	YBX3	94	90.210	Chinchilla_lanigera
ENSRNOG00000005480	Ybx3	100	84.182	ENSCSAG00000008744	YBX3	85	89.623	Chlorocebus_sabaeus
ENSRNOG00000005480	Ybx3	94	73.837	ENSCHOG00000011988	YBX3	54	100.000	Choloepus_hoffmanni
ENSRNOG00000005480	Ybx3	80	80.069	ENSCPBG00000014147	YBX3	87	78.025	Chrysemys_picta_bellii
ENSRNOG00000005480	Ybx3	57	57.143	ENSCING00000010654	yb1/2/3	55	61.783	Ciona_intestinalis
ENSRNOG00000005480	Ybx3	81	91.186	ENSCANG00000036801	YBX3	100	89.841	Colobus_angolensis_palliatus
ENSRNOG00000005480	Ybx3	100	98.615	ENSCGRG00001016148	Ybx3	100	98.615	Cricetulus_griseus_chok1gshd
ENSRNOG00000005480	Ybx3	79	97.232	ENSCGRG00000004563	Ybx3	98	97.232	Cricetulus_griseus_crigri
ENSRNOG00000005480	Ybx3	91	83.283	ENSDORG00000009103	Ybx3	89	86.032	Dipodomys_ordii
ENSRNOG00000005480	Ybx3	78	84.266	ENSETEG00000002557	YBX3	99	82.746	Echinops_telfairi
ENSRNOG00000005480	Ybx3	100	82.385	ENSEASG00005014726	YBX3	100	84.824	Equus_asinus_asinus
ENSRNOG00000005480	Ybx3	100	85.366	ENSECAG00000013777	YBX3	100	87.805	Equus_caballus
ENSRNOG00000005480	Ybx3	78	90.141	ENSEEUG00000010415	YBX3	100	91.549	Erinaceus_europaeus
ENSRNOG00000005480	Ybx3	100	84.987	ENSFCAG00000027748	YBX3	85	91.798	Felis_catus
ENSRNOG00000005480	Ybx3	73	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSRNOG00000005480	Ybx3	67	100.000	ENSFDAG00000021192	YBX3	92	86.364	Fukomys_damarensis
ENSRNOG00000005480	Ybx3	75	83.105	ENSGALG00000031890	YBX3	78	86.087	Gallus_gallus
ENSRNOG00000005480	Ybx3	93	71.598	ENSGAGG00000017780	YBX3	78	88.596	Gopherus_agassizii
ENSRNOG00000005480	Ybx3	100	84.450	ENSGGOG00000001352	YBX3	85	89.937	Gorilla_gorilla
ENSRNOG00000005480	Ybx3	83	77.961	ENSHGLG00000014798	-	90	80.328	Heterocephalus_glaber_female
ENSRNOG00000005480	Ybx3	75	80.882	ENSHGLG00000015495	-	87	79.592	Heterocephalus_glaber_female
ENSRNOG00000005480	Ybx3	74	92.202	ENSHGLG00100003589	YBX3	87	92.202	Heterocephalus_glaber_male
ENSRNOG00000005480	Ybx3	93	85.000	ENSSTOG00000032577	-	87	86.538	Ictidomys_tridecemlineatus
ENSRNOG00000005480	Ybx3	79	87.676	ENSSTOG00000002108	-	88	87.676	Ictidomys_tridecemlineatus
ENSRNOG00000005480	Ybx3	81	70.748	ENSJJAG00000014239	Ybx3	100	84.375	Jaculus_jaculus
ENSRNOG00000005480	Ybx3	100	87.805	ENSLAFG00000017247	YBX3	94	87.342	Loxodonta_africana
ENSRNOG00000005480	Ybx3	100	84.409	ENSMFAG00000039369	YBX3	85	89.623	Macaca_fascicularis
ENSRNOG00000005480	Ybx3	88	86.769	ENSMMUG00000022469	YBX3	98	89.623	Macaca_mulatta
ENSRNOG00000005480	Ybx3	100	84.140	ENSMNEG00000045109	YBX3	85	89.623	Macaca_nemestrina
ENSRNOG00000005480	Ybx3	93	82.301	ENSMLEG00000033618	YBX3	81	91.958	Mandrillus_leucophaeus
ENSRNOG00000005480	Ybx3	72	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSRNOG00000005480	Ybx3	88	98.433	ENSMAUG00000012185	Ybx3	100	98.433	Mesocricetus_auratus
ENSRNOG00000005480	Ybx3	100	85.676	ENSMICG00000038002	-	85	93.038	Microcebus_murinus
ENSRNOG00000005480	Ybx3	100	71.331	ENSMICG00000031459	-	82	75.862	Microcebus_murinus
ENSRNOG00000005480	Ybx3	86	97.411	ENSMOCG00000016291	Ybx3	100	99.013	Microtus_ochrogaster
ENSRNOG00000005480	Ybx3	78	84.965	ENSMODG00000018248	YBX3	91	84.669	Monodelphis_domestica
ENSRNOG00000005480	Ybx3	100	98.615	MGP_CAROLIEiJ_G0028947	Ybx3	100	98.615	Mus_caroli
ENSRNOG00000005480	Ybx3	100	98.615	ENSMUSG00000030189	Ybx3	100	98.615	Mus_musculus
ENSRNOG00000005480	Ybx3	100	99.169	MGP_PahariEiJ_G0022709	Ybx3	100	99.169	Mus_pahari
ENSRNOG00000005480	Ybx3	100	98.892	MGP_SPRETEiJ_G0029994	Ybx3	100	98.892	Mus_spretus
ENSRNOG00000005480	Ybx3	100	70.263	ENSMPUG00000011810	YBX3	85	75.692	Mustela_putorius_furo
ENSRNOG00000005480	Ybx3	73	91.078	ENSMLUG00000007476	YBX3	100	91.078	Myotis_lucifugus
ENSRNOG00000005480	Ybx3	81	90.136	ENSNGAG00000000710	Ybx3	88	90.610	Nannospalax_galili
ENSRNOG00000005480	Ybx3	87	84.735	ENSNLEG00000034844	YBX3	90	86.164	Nomascus_leucogenys
ENSRNOG00000005480	Ybx3	87	82.132	ENSODEG00000017957	YBX3	93	84.177	Octodon_degus
ENSRNOG00000005480	Ybx3	81	88.776	ENSOCUG00000001889	YBX3	88	88.411	Oryctolagus_cuniculus
ENSRNOG00000005480	Ybx3	98	87.387	ENSOGAG00000013245	YBX3	86	90.093	Otolemur_garnettii
ENSRNOG00000005480	Ybx3	70	95.833	ENSOARG00000020919	YBX3	99	81.940	Ovis_aries
ENSRNOG00000005480	Ybx3	100	82.192	ENSPPAG00000039068	YBX3	82	92.905	Pan_paniscus
ENSRNOG00000005480	Ybx3	100	85.255	ENSPPRG00000005859	YBX3	85	92.114	Panthera_pardus
ENSRNOG00000005480	Ybx3	78	94.014	ENSPTIG00000005322	YBX3	81	93.706	Panthera_tigris_altaica
ENSRNOG00000005480	Ybx3	100	84.225	ENSPTRG00000004681	YBX3	85	89.937	Pan_troglodytes
ENSRNOG00000005480	Ybx3	100	84.140	ENSPANG00000010280	YBX3	85	89.308	Papio_anubis
ENSRNOG00000005480	Ybx3	73	85.116	ENSPSIG00000009247	YBX3	100	85.116	Pelodiscus_sinensis
ENSRNOG00000005480	Ybx3	88	98.734	ENSPEMG00000012132	-	100	98.734	Peromyscus_maniculatus_bairdii
ENSRNOG00000005480	Ybx3	79	94.783	ENSPEMG00000010391	-	87	94.783	Peromyscus_maniculatus_bairdii
ENSRNOG00000005480	Ybx3	71	83.012	ENSPCIG00000029949	YBX3	100	83.012	Phascolarctos_cinereus
ENSRNOG00000005480	Ybx3	100	84.636	ENSPPYG00000004279	YBX3	100	85.984	Pongo_abelii
ENSRNOG00000005480	Ybx3	78	85.764	ENSPCAG00000001397	YBX3	100	87.847	Procavia_capensis
ENSRNOG00000005480	Ybx3	51	91.803	ENSPCOG00000011663	YBX3	80	88.293	Propithecus_coquereli
ENSRNOG00000005480	Ybx3	82	79.333	ENSPVAG00000006740	YBX3	85	78.864	Pteropus_vampyrus
ENSRNOG00000005480	Ybx3	100	84.097	ENSRBIG00000039208	YBX3	100	85.175	Rhinopithecus_bieti
ENSRNOG00000005480	Ybx3	100	84.367	ENSRROG00000029638	YBX3	100	85.714	Rhinopithecus_roxellana
ENSRNOG00000005480	Ybx3	100	78.437	ENSSBOG00000030573	YBX3	87	89.865	Saimiri_boliviensis_boliviensis
ENSRNOG00000005480	Ybx3	67	98.837	ENSSHAG00000003262	YBX3	98	83.849	Sarcophilus_harrisii
ENSRNOG00000005480	Ybx3	91	85.965	ENSSSCG00000000633	YBX3	84	91.250	Sus_scrofa
ENSRNOG00000005480	Ybx3	72	97.143	ENSTGUG00000012047	YBX3	75	97.143	Taeniopygia_guttata
ENSRNOG00000005480	Ybx3	100	80.654	ENSTBEG00000012570	YBX3	81	93.174	Tupaia_belangeri
ENSRNOG00000005480	Ybx3	72	83.459	ENSTTRG00000008045	YBX3	100	84.586	Tursiops_truncatus
ENSRNOG00000005480	Ybx3	76	90.614	ENSUAMG00000016662	YBX3	100	90.614	Ursus_americanus
ENSRNOG00000005480	Ybx3	78	94.014	ENSUMAG00000016118	YBX3	94	93.706	Ursus_maritimus
ENSRNOG00000005480	Ybx3	59	100.000	ENSVPAG00000000876	YBX3	100	71.127	Vicugna_pacos
ENSRNOG00000005480	Ybx3	76	89.892	ENSVVUG00000004956	YBX3	100	89.892	Vulpes_vulpes
ENSRNOG00000005480	Ybx3	74	73.182	ENSXETG00000016239	ybx3	86	83.810	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	8029009.	IMP	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	IEA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0001701	in utero embryonic development	-	IEA	Process
GO:0001701	in utero embryonic development	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	8029009.	IDA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	8029009.	IDA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005921	gap junction	16650609.	IDA	Component
GO:0007283	spermatogenesis	-	IEA	Process
GO:0007283	spermatogenesis	11675468.	IEP	Process
GO:0007283	spermatogenesis	-	ISO	Process
GO:0008584	male gonad development	-	IEA	Process
GO:0008584	male gonad development	-	ISO	Process
GO:0009566	fertilization	-	IEA	Process
GO:0009566	fertilization	-	ISO	Process
GO:0031100	animal organ regeneration	8029009.	IEP	Process
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0046622	positive regulation of organ growth	-	IEA	Process
GO:0046622	positive regulation of organ growth	-	ISO	Process
GO:0048642	negative regulation of skeletal muscle tissue development	-	IEA	Process
GO:0048642	negative regulation of skeletal muscle tissue development	-	ISO	Process
GO:0060546	negative regulation of necroptotic process	-	IEA	Process
GO:0060546	negative regulation of necroptotic process	-	ISO	Process
GO:0071356	cellular response to tumor necrosis factor	-	IEA	Process
GO:0071356	cellular response to tumor necrosis factor	-	ISO	Process
GO:0071474	cellular hyperosmotic response	-	IEA	Process
GO:0071474	cellular hyperosmotic response	-	ISO	Process
GO:1902219	negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress	-	IEA	Process
GO:1902219	negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress	-	ISO	Process
GO:1905538	polysome binding	-	IEA	Function
GO:1905538	polysome binding	-	ISO	Function