EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000005556 (Gene tree)
Gene ID
680737
Gene Symbol
Snrpf
Alias
LOC680737
Full Name
small nuclear ribonucleoprotein polypeptide F
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
6704 bases
Position
chr7:34478331-34485034
Accession
1588229
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000007351LSMPF01423.222.7e-2111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000007351-849-ENSRNOP0000000735186 (aa)-D4AAT4
Gene Model
Click here to download ENSRNOG00000005556's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005556's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000005556Snrpf7751.515ENSRNOG00000030374Lsm68351.515
ENSRNOG00000005556Snrpf7751.515ENSRNOG00000049370LOC1003607508351.515
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000005556Snrpf100100.000ENSG00000139343SNRPF100100.000Homo_sapiens
ENSRNOG00000005556Snrpf9997.647ENSAPOG00000003377snrpf6697.647Acanthochromis_polyacanthus
ENSRNOG00000005556Snrpf8886.842ENSAMEG00000018718-8788.000Ailuropoda_melanoleuca
ENSRNOG00000005556Snrpf99100.000ENSAMEG00000002166-100100.000Ailuropoda_melanoleuca
ENSRNOG00000005556Snrpf9897.619ENSACIG00000013216snrpf9997.619Amphilophus_citrinellus
ENSRNOG00000005556Snrpf9897.619ENSAOCG00000015108snrpf9997.619Amphiprion_ocellaris
ENSRNOG00000005556Snrpf9897.619ENSAPEG00000022022snrpf9997.619Amphiprion_percula
ENSRNOG00000005556Snrpf9897.619ENSATEG00000022625snrpf9097.619Anabas_testudineus
ENSRNOG00000005556Snrpf9998.824ENSACAG00000014073SNRPF9898.824Anolis_carolinensis
ENSRNOG00000005556Snrpf8769.333ENSANAG00000025860-8569.333Aotus_nancymaae
ENSRNOG00000005556Snrpf8391.549ENSANAG00000020297-6591.549Aotus_nancymaae
ENSRNOG00000005556Snrpf100100.000ENSANAG00000032845SNRPF100100.000Aotus_nancymaae
ENSRNOG00000005556Snrpf9897.619ENSACLG00000016066snrpf9997.619Astatotilapia_calliptera
ENSRNOG00000005556Snrpf8794.667ENSAMXG00000007421snrpf8794.667Astyanax_mexicanus
ENSRNOG00000005556Snrpf100100.000ENSBTAG00000016271SNRPF100100.000Bos_taurus
ENSRNOG00000005556Snrpf9193.590ENSBTAG00000050012-9393.333Bos_taurus
ENSRNOG00000005556Snrpf9072.727WBGene00004918snr-58575.000Caenorhabditis_elegans
ENSRNOG00000005556Snrpf100100.000ENSCJAG00000002705-100100.000Callithrix_jacchus
ENSRNOG00000005556Snrpf100100.000ENSCAFG00000006395-77100.000Canis_familiaris
ENSRNOG00000005556Snrpf8591.781ENSCAFG00000031151-8594.521Canis_familiaris
ENSRNOG00000005556Snrpf8591.781ENSCAFG00020010823-8594.521Canis_lupus_dingo
ENSRNOG00000005556Snrpf9188.462ENSCAFG00020013161-7497.143Canis_lupus_dingo
ENSRNOG00000005556Snrpf8786.667ENSTSYG00000030635-8786.667Carlito_syrichta
ENSRNOG00000005556Snrpf9493.827ENSTSYG00000031636-6195.890Carlito_syrichta
ENSRNOG00000005556Snrpf10094.253ENSTSYG00000036502-10094.253Carlito_syrichta
ENSRNOG00000005556Snrpf99100.000ENSCAPG00000007242SNRPF100100.000Cavia_aperea
ENSRNOG00000005556Snrpf100100.000ENSCPOG00000013898SNRPF100100.000Cavia_porcellus
ENSRNOG00000005556Snrpf10098.837ENSCCAG00000017356-10098.837Cebus_capucinus
ENSRNOG00000005556Snrpf10088.372ENSCCAG00000033627-5989.333Cebus_capucinus
ENSRNOG00000005556Snrpf100100.000ENSCCAG00000037378-100100.000Cebus_capucinus
ENSRNOG00000005556Snrpf100100.000ENSCLAG00000007200SNRPF100100.000Chinchilla_lanigera
ENSRNOG00000005556Snrpf100100.000ENSCSAG00000003602-70100.000Chlorocebus_sabaeus
ENSRNOG00000005556Snrpf74100.000ENSCHOG00000009392SNRPF100100.000Choloepus_hoffmanni
ENSRNOG00000005556Snrpf8792.000ENSCPBG00000006227-8792.000Chrysemys_picta_bellii
ENSRNOG00000005556Snrpf10089.535ENSCPBG00000026463-8790.667Chrysemys_picta_bellii
ENSRNOG00000005556Snrpf9994.118ENSCPBG00000024287-6794.118Chrysemys_picta_bellii
ENSRNOG00000005556Snrpf10088.372ENSCPBG00000001985-8990.667Chrysemys_picta_bellii
ENSRNOG00000005556Snrpf9987.059ENSCSAVG00000007498-8489.189Ciona_savignyi
ENSRNOG00000005556Snrpf8792.000ENSCGRG00001008965-5892.000Cricetulus_griseus_chok1gshd
ENSRNOG00000005556Snrpf100100.000ENSCGRG00001017100-100100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000005556Snrpf100100.000ENSCGRG00000000336-100100.000Cricetulus_griseus_crigri
ENSRNOG00000005556Snrpf9392.500ENSCGRG00000018878-9492.000Cricetulus_griseus_crigri
ENSRNOG00000005556Snrpf8796.000ENSCSEG00000004748snrpf8796.000Cynoglossus_semilaevis
ENSRNOG00000005556Snrpf9997.647ENSCVAG00000000397snrpf6797.647Cyprinodon_variegatus
ENSRNOG00000005556Snrpf10095.455ENSDARG00000105037snrpf10095.455Danio_rerio
ENSRNOG00000005556Snrpf8784.000ENSDNOG00000049373-6584.000Dasypus_novemcinctus
ENSRNOG00000005556Snrpf10098.837ENSDNOG00000048989-7798.837Dasypus_novemcinctus
ENSRNOG00000005556Snrpf100100.000ENSDNOG00000043775-55100.000Dasypus_novemcinctus
ENSRNOG00000005556Snrpf8198.571ENSDORG00000029740-8598.571Dipodomys_ordii
ENSRNOG00000005556Snrpf8488.889ENSDORG00000025351-10088.889Dipodomys_ordii
ENSRNOG00000005556Snrpf9878.571FBgn0000426SmF8382.192Drosophila_melanogaster
ENSRNOG00000005556Snrpf100100.000ENSETEG00000001558-100100.000Echinops_telfairi
ENSRNOG00000005556Snrpf9575.610ENSEBUG00000001793-7286.567Eptatretus_burgeri
ENSRNOG00000005556Snrpf100100.000ENSECAG00000019817SNRPF70100.000Equus_caballus
ENSRNOG00000005556Snrpf99100.000ENSEEUG00000013509SNRPF100100.000Erinaceus_europaeus
ENSRNOG00000005556Snrpf10091.860ENSELUG00000007737RUXF8693.333Esox_lucius
ENSRNOG00000005556Snrpf8794.667ENSELUG00000003121RUXF8794.667Esox_lucius
ENSRNOG00000005556Snrpf8776.000ENSFCAG00000021942-8776.000Felis_catus
ENSRNOG00000005556Snrpf100100.000ENSFCAG00000029966-100100.000Felis_catus
ENSRNOG00000005556Snrpf9878.571ENSFCAG00000031148-7276.923Felis_catus
ENSRNOG00000005556Snrpf99100.000ENSFALG00000010799SNRPF99100.000Ficedula_albicollis
ENSRNOG00000005556Snrpf100100.000ENSFDAG00000002831-100100.000Fukomys_damarensis
ENSRNOG00000005556Snrpf9997.647ENSFHEG00000003240snrpf7597.647Fundulus_heteroclitus
ENSRNOG00000005556Snrpf9997.647ENSGMOG00000007741snrpf10097.647Gadus_morhua
ENSRNOG00000005556Snrpf100100.000ENSGALG00000011409SNRPF100100.000Gallus_gallus
ENSRNOG00000005556Snrpf9897.619ENSGAFG00000016187snrpf9797.619Gambusia_affinis
ENSRNOG00000005556Snrpf9996.471ENSGACG00000020055snrpf10096.471Gasterosteus_aculeatus
ENSRNOG00000005556Snrpf8086.957ENSGAGG00000014132-8386.957Gopherus_agassizii
ENSRNOG00000005556Snrpf9291.139ENSGAGG00000022991-8094.118Gopherus_agassizii
ENSRNOG00000005556Snrpf8693.243ENSGAGG00000012945-6994.667Gopherus_agassizii
ENSRNOG00000005556Snrpf7091.667ENSGAGG00000011163-10091.667Gopherus_agassizii
ENSRNOG00000005556Snrpf7296.774ENSGAGG00000020974-5296.774Gopherus_agassizii
ENSRNOG00000005556Snrpf9880.952ENSGGOG00000039936-8378.667Gorilla_gorilla
ENSRNOG00000005556Snrpf9275.949ENSGGOG00000039564-9074.667Gorilla_gorilla
ENSRNOG00000005556Snrpf100100.000ENSGGOG00000001127-100100.000Gorilla_gorilla
ENSRNOG00000005556Snrpf10098.837ENSHGLG00000021172-10098.837Heterocephalus_glaber_female
ENSRNOG00000005556Snrpf100100.000ENSHGLG00000009108SNRPF100100.000Heterocephalus_glaber_female
ENSRNOG00000005556Snrpf10098.837ENSHGLG00100019596-10098.837Heterocephalus_glaber_male
ENSRNOG00000005556Snrpf99100.000ENSHGLG00100008103-100100.000Heterocephalus_glaber_male
ENSRNOG00000005556Snrpf7385.714ENSHCOG00000018663snrpf5585.714Hippocampus_comes
ENSRNOG00000005556Snrpf10097.674ENSIPUG00000018994snrpf10097.674Ictalurus_punctatus
ENSRNOG00000005556Snrpf100100.000ENSSTOG00000010434-100100.000Ictidomys_tridecemlineatus
ENSRNOG00000005556Snrpf10084.884ENSJJAG00000010502-8986.667Jaculus_jaculus
ENSRNOG00000005556Snrpf100100.000ENSJJAG00000011272-100100.000Jaculus_jaculus
ENSRNOG00000005556Snrpf10081.395ENSJJAG00000004558-8982.667Jaculus_jaculus
ENSRNOG00000005556Snrpf7894.030ENSJJAG00000004828-10094.030Jaculus_jaculus
ENSRNOG00000005556Snrpf10096.512ENSKMAG00000013566snrpf10096.512Kryptolebias_marmoratus
ENSRNOG00000005556Snrpf10096.512ENSLBEG00000008800snrpf10096.512Labrus_bergylta
ENSRNOG00000005556Snrpf10098.837ENSLACG00000002456-7498.837Latimeria_chalumnae
ENSRNOG00000005556Snrpf8794.667ENSLOCG00000015744snrpf8794.667Lepisosteus_oculatus
ENSRNOG00000005556Snrpf99100.000ENSLAFG00000017426SNRPF99100.000Loxodonta_africana
ENSRNOG00000005556Snrpf9896.429ENSMAMG00000016593snrpf9996.429Mastacembelus_armatus
ENSRNOG00000005556Snrpf9897.619ENSMZEG00005014701snrpf9997.619Maylandia_zebra
ENSRNOG00000005556Snrpf98100.000ENSMGAG00000011453-76100.000Meleagris_gallopavo
ENSRNOG00000005556Snrpf9774.699ENSMAUG00000010289-9674.699Mesocricetus_auratus
ENSRNOG00000005556Snrpf86100.000ENSMAUG00000019737-100100.000Mesocricetus_auratus
ENSRNOG00000005556Snrpf86100.000ENSMAUG00000016909-100100.000Mesocricetus_auratus
ENSRNOG00000005556Snrpf8794.667ENSMAUG00000008799-8794.667Mesocricetus_auratus
ENSRNOG00000005556Snrpf100100.000ENSMICG00000012153-100100.000Microcebus_murinus
ENSRNOG00000005556Snrpf8793.333ENSMICG00000030494-6093.333Microcebus_murinus
ENSRNOG00000005556Snrpf100100.000ENSMOCG00000020437Snrpf100100.000Microtus_ochrogaster
ENSRNOG00000005556Snrpf8785.333ENSMOCG00000022166-8285.333Microtus_ochrogaster
ENSRNOG00000005556Snrpf7983.824ENSMOCG00000020220-8783.824Microtus_ochrogaster
ENSRNOG00000005556Snrpf9996.471ENSMMOG00000007127snrpf10096.471Mola_mola
ENSRNOG00000005556Snrpf100100.000ENSMODG00000008091SNRPF75100.000Monodelphis_domestica
ENSRNOG00000005556Snrpf9897.619ENSMALG00000012328snrpf9997.619Monopterus_albus
ENSRNOG00000005556Snrpf100100.000MGP_CAROLIEiJ_G0015735-100100.000Mus_caroli
ENSRNOG00000005556Snrpf100100.000ENSMUSG00000020018Snrpf100100.000Mus_musculus
ENSRNOG00000005556Snrpf100100.000MGP_PahariEiJ_G0031350Snrpf100100.000Mus_pahari
ENSRNOG00000005556Snrpf100100.000MGP_SPRETEiJ_G0016553Snrpf100100.000Mus_spretus
ENSRNOG00000005556Snrpf100100.000ENSMPUG00000007176-77100.000Mustela_putorius_furo
ENSRNOG00000005556Snrpf100100.000ENSMLUG00000026149-81100.000Myotis_lucifugus
ENSRNOG00000005556Snrpf99100.000ENSMLUG00000013577-100100.000Myotis_lucifugus
ENSRNOG00000005556Snrpf100100.000ENSMLUG00000029201-81100.000Myotis_lucifugus
ENSRNOG00000005556Snrpf10080.233ENSMLUG00000026269-7178.667Myotis_lucifugus
ENSRNOG00000005556Snrpf100100.000ENSMLUG00000027932-81100.000Myotis_lucifugus
ENSRNOG00000005556Snrpf100100.000ENSNGAG00000024292-100100.000Nannospalax_galili
ENSRNOG00000005556Snrpf7390.476ENSNGAG00000005851-7190.000Nannospalax_galili
ENSRNOG00000005556Snrpf9997.647ENSNBRG00000011682snrpf8797.647Neolamprologus_brichardi
ENSRNOG00000005556Snrpf8670.270ENSMEUG00000000671SNRPF8770.270Notamacropus_eugenii
ENSRNOG00000005556Snrpf100100.000ENSODEG00000010328-100100.000Octodon_degus
ENSRNOG00000005556Snrpf10098.837ENSOCUG00000010925SNRPF7698.837Oryctolagus_cuniculus
ENSRNOG00000005556Snrpf8694.595ENSORLG00020008216snrpf8794.595Oryzias_latipes_hni
ENSRNOG00000005556Snrpf8694.595ENSORLG00015007418snrpf8794.595Oryzias_latipes_hsok
ENSRNOG00000005556Snrpf9896.429ENSOMEG00000003018snrpf9996.429Oryzias_melastigma
ENSRNOG00000005556Snrpf10097.674ENSOGAG00000030323-10097.674Otolemur_garnettii
ENSRNOG00000005556Snrpf100100.000ENSOARG00000011853-75100.000Ovis_aries
ENSRNOG00000005556Snrpf9275.949ENSPPAG00000037479-9174.667Pan_paniscus
ENSRNOG00000005556Snrpf9880.952ENSPPAG00000037544-8378.667Pan_paniscus
ENSRNOG00000005556Snrpf9877.381ENSPPRG00000007449-7777.333Panthera_pardus
ENSRNOG00000005556Snrpf100100.000ENSPPRG00000005875-100100.000Panthera_pardus
ENSRNOG00000005556Snrpf100100.000ENSPTIG00000007520SNRPF100100.000Panthera_tigris_altaica
ENSRNOG00000005556Snrpf9879.762ENSPTIG00000005117-8977.333Panthera_tigris_altaica
ENSRNOG00000005556Snrpf9880.952ENSPTRG00000043814-8378.667Pan_troglodytes
ENSRNOG00000005556Snrpf9275.949ENSPTRG00000047717-9174.667Pan_troglodytes
ENSRNOG00000005556Snrpf9997.647ENSPKIG00000014784snrpf9397.647Paramormyrops_kingsleyae
ENSRNOG00000005556Snrpf99100.000ENSPSIG00000016462SNRPF99100.000Pelodiscus_sinensis
ENSRNOG00000005556Snrpf9996.471ENSPMGG00000023548snrpf10096.471Periophthalmus_magnuspinnatus
ENSRNOG00000005556Snrpf100100.000ENSPEMG00000023326Snrpf100100.000Peromyscus_maniculatus_bairdii
ENSRNOG00000005556Snrpf9897.619ENSPLAG00000023932snrpf9997.619Poecilia_latipinna
ENSRNOG00000005556Snrpf9897.619ENSPMEG00000003377snrpf9997.619Poecilia_mexicana
ENSRNOG00000005556Snrpf9897.619ENSPREG00000022635snrpf9797.619Poecilia_reticulata
ENSRNOG00000005556Snrpf100100.000ENSPPYG00000004847-100100.000Pongo_abelii
ENSRNOG00000005556Snrpf100100.000ENSPCOG00000023833-100100.000Propithecus_coquereli
ENSRNOG00000005556Snrpf100100.000ENSPVAG00000009036SNRPF100100.000Pteropus_vampyrus
ENSRNOG00000005556Snrpf9897.619ENSPNYG00000021712snrpf9997.619Pundamilia_nyererei
ENSRNOG00000005556Snrpf9896.429ENSPNAG00000019117snrpf9996.429Pygocentrus_nattereri
ENSRNOG00000005556Snrpf10096.512ENSRBIG00000030414-10096.512Rhinopithecus_bieti
ENSRNOG00000005556Snrpf10096.512ENSRROG00000021975-10096.512Rhinopithecus_roxellana
ENSRNOG00000005556Snrpf8159.155YPR182WSMX38359.155Saccharomyces_cerevisiae
ENSRNOG00000005556Snrpf100100.000ENSSBOG00000036179-100100.000Saimiri_boliviensis_boliviensis
ENSRNOG00000005556Snrpf10098.837ENSSBOG00000012868-10098.837Saimiri_boliviensis_boliviensis
ENSRNOG00000005556Snrpf9180.247ENSSBOG00000027638-9180.247Saimiri_boliviensis_boliviensis
ENSRNOG00000005556Snrpf8785.333ENSSBOG00000032297-8685.333Saimiri_boliviensis_boliviensis
ENSRNOG00000005556Snrpf99100.000ENSSHAG00000012294SNRPF77100.000Sarcophilus_harrisii
ENSRNOG00000005556Snrpf7496.875ENSSFOG00015021523snrpf9696.875Scleropages_formosus
ENSRNOG00000005556Snrpf8794.667ENSSMAG00000005533snrpf8694.667Scophthalmus_maximus
ENSRNOG00000005556Snrpf7696.923ENSSDUG00000016283snrpf7796.923Seriola_dumerili
ENSRNOG00000005556Snrpf9373.750ENSSLDG00000003885-9077.027Seriola_lalandi_dorsalis
ENSRNOG00000005556Snrpf10096.512ENSSLDG00000005119snrpf10096.512Seriola_lalandi_dorsalis
ENSRNOG00000005556Snrpf98100.000ENSSPUG00000014590-99100.000Sphenodon_punctatus
ENSRNOG00000005556Snrpf9997.647ENSSPAG00000003283snrpf9797.647Stegastes_partitus
ENSRNOG00000005556Snrpf100100.000ENSSSCG00000000895SNRPF100100.000Sus_scrofa
ENSRNOG00000005556Snrpf6794.828ENSTRUG00000014956snrpf8494.828Takifugu_rubripes
ENSRNOG00000005556Snrpf10096.512ENSTNIG00000012672snrpf10096.512Tetraodon_nigroviridis
ENSRNOG00000005556Snrpf8770.667ENSTTRG00000006070SNRPF8770.667Tursiops_truncatus
ENSRNOG00000005556Snrpf10087.209ENSUAMG00000001101-8889.333Ursus_americanus
ENSRNOG00000005556Snrpf100100.000ENSUAMG00000008176-100100.000Ursus_americanus
ENSRNOG00000005556Snrpf100100.000ENSUMAG00000003528-100100.000Ursus_maritimus
ENSRNOG00000005556Snrpf8789.333ENSUMAG00000006177-8889.333Ursus_maritimus
ENSRNOG00000005556Snrpf100100.000ENSVPAG00000008712-100100.000Vicugna_pacos
ENSRNOG00000005556Snrpf9192.308ENSVVUG00000023821-9692.000Vulpes_vulpes
ENSRNOG00000005556Snrpf8675.000ENSXETG00000021630snrpf8775.000Xenopus_tropicalis
ENSRNOG00000005556Snrpf9897.619ENSXCOG00000013860snrpf9797.619Xiphophorus_couchianus
ENSRNOG00000005556Snrpf9897.619ENSXMAG00000015448snrpf9997.619Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000387spliceosomal snRNP assembly-IEAProcess
GO:0000387spliceosomal snRNP assembly-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003674molecular_function-NDFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-ISOFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-ISOComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005683U7 snRNP-ISOComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP-ISOComponent
GO:0005687U4 snRNP-ISOComponent
GO:0005689U12-type spliceosomal complex-ISOComponent
GO:0005732small nucleolar ribonucleoprotein complex-IEAComponent
GO:0005829cytosol-ISOComponent
GO:0008150biological_process-NDProcess
GO:0008380RNA splicing-ISOProcess
GO:0030532small nuclear ribonucleoprotein complex-ISOComponent
GO:0034709methylosome-ISOComponent
GO:0034715pICln-Sm protein complex-ISOComponent
GO:0034719SMN-Sm protein complex-ISOComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent

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