EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005733 (Gene tree)
Gene ID: 299256
Gene Symbol: Cpsf2
Alias: LOC299256
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 28503 bases
Position: chr6:125870372-125898874
Accession: 1309687
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008612	Beta-Casp	PF10996.8	9.2e-21	1	1
ENSRNOP00000075209	Beta-Casp	PF10996.8	9.2e-21	1	1
ENSRNOP00000008612	Lactamase_B	PF00753.27	1.1e-05	1	1
ENSRNOP00000075209	Lactamase_B	PF00753.27	1.1e-05	1	1
ENSRNOP00000008612	RMMBL	PF07521.12	1.7e-15	1	1
ENSRNOP00000075209	RMMBL	PF07521.12	1.7e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008612	-	4892	-	ENSRNOP00000008612	782 (aa)	-	D3Z9E6
ENSRNOT00000091300	-	5580	-	ENSRNOP00000075209	782 (aa)	-	D3Z9E6

Gene Model

Click here to download ENSRNOG00000005733's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005733's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005733	Cpsf2	100	98.338	ENSG00000165934	CPSF2	100	98.338	Homo_sapiens
ENSRNOG00000005733	Cpsf2	100	85.551	ENSAPOG00000001242	cpsf2	100	85.551	Acanthochromis_polyacanthus
ENSRNOG00000005733	Cpsf2	100	85.823	ENSACIG00000009331	cpsf2	100	85.823	Amphilophus_citrinellus
ENSRNOG00000005733	Cpsf2	100	85.678	ENSAOCG00000014095	cpsf2	100	85.678	Amphiprion_ocellaris
ENSRNOG00000005733	Cpsf2	100	85.678	ENSAPEG00000009158	cpsf2	100	85.678	Amphiprion_percula
ENSRNOG00000005733	Cpsf2	96	85.921	ENSATEG00000017644	cpsf2	100	84.307	Anabas_testudineus
ENSRNOG00000005733	Cpsf2	100	95.924	ENSAPLG00000006330	CPSF2	100	95.924	Anas_platyrhynchos
ENSRNOG00000005733	Cpsf2	100	94.636	ENSACAG00000009245	CPSF2	100	94.636	Anolis_carolinensis
ENSRNOG00000005733	Cpsf2	100	98.338	ENSANAG00000022915	CPSF2	100	98.338	Aotus_nancymaae
ENSRNOG00000005733	Cpsf2	100	85.260	ENSAMXG00000018696	cpsf2	100	85.260	Astyanax_mexicanus
ENSRNOG00000005733	Cpsf2	100	98.593	ENSBTAG00000010227	CPSF2	100	98.593	Bos_taurus
ENSRNOG00000005733	Cpsf2	100	41.335	WBGene00017313	cpsf-2	100	41.017	Caenorhabditis_elegans
ENSRNOG00000005733	Cpsf2	100	98.338	ENSCJAG00000018069	CPSF2	100	98.338	Callithrix_jacchus
ENSRNOG00000005733	Cpsf2	100	98.465	ENSCAFG00000010909	CPSF2	100	98.465	Canis_familiaris
ENSRNOG00000005733	Cpsf2	100	98.465	ENSCAFG00020020670	CPSF2	100	98.465	Canis_lupus_dingo
ENSRNOG00000005733	Cpsf2	100	98.593	ENSCHIG00000023848	CPSF2	100	98.593	Capra_hircus
ENSRNOG00000005733	Cpsf2	100	98.082	ENSTSYG00000009036	CPSF2	100	98.082	Carlito_syrichta
ENSRNOG00000005733	Cpsf2	100	98.593	ENSCPOG00000010899	CPSF2	100	98.593	Cavia_porcellus
ENSRNOG00000005733	Cpsf2	100	98.338	ENSCCAG00000028088	CPSF2	100	98.338	Cebus_capucinus
ENSRNOG00000005733	Cpsf2	100	98.465	ENSCATG00000030132	CPSF2	100	98.465	Cercocebus_atys
ENSRNOG00000005733	Cpsf2	100	98.465	ENSCLAG00000012404	CPSF2	100	98.465	Chinchilla_lanigera
ENSRNOG00000005733	Cpsf2	100	98.465	ENSCSAG00000011300	CPSF2	100	98.465	Chlorocebus_sabaeus
ENSRNOG00000005733	Cpsf2	100	91.944	ENSCHOG00000012904	CPSF2	100	91.944	Choloepus_hoffmanni
ENSRNOG00000005733	Cpsf2	100	95.785	ENSCPBG00000008766	CPSF2	97	95.785	Chrysemys_picta_bellii
ENSRNOG00000005733	Cpsf2	100	54.670	ENSCING00000007881	-	100	54.545	Ciona_intestinalis
ENSRNOG00000005733	Cpsf2	94	98.497	ENSCANG00000041651	CPSF2	100	98.497	Colobus_angolensis_palliatus
ENSRNOG00000005733	Cpsf2	100	98.849	ENSCGRG00001006901	Cpsf2	100	98.849	Cricetulus_griseus_chok1gshd
ENSRNOG00000005733	Cpsf2	100	98.849	ENSCGRG00000012416	Cpsf2	100	98.849	Cricetulus_griseus_crigri
ENSRNOG00000005733	Cpsf2	100	83.397	ENSCSEG00000004116	cpsf2	100	83.397	Cynoglossus_semilaevis
ENSRNOG00000005733	Cpsf2	100	85.044	ENSCVAG00000000095	cpsf2	100	85.171	Cyprinodon_variegatus
ENSRNOG00000005733	Cpsf2	100	85.570	ENSDARG00000028971	cpsf2	100	85.570	Danio_rerio
ENSRNOG00000005733	Cpsf2	100	98.465	ENSDNOG00000042757	CPSF2	100	98.465	Dasypus_novemcinctus
ENSRNOG00000005733	Cpsf2	100	98.721	ENSDORG00000013709	Cpsf2	100	98.721	Dipodomys_ordii
ENSRNOG00000005733	Cpsf2	100	53.176	FBgn0027873	Cpsf100	100	52.934	Drosophila_melanogaster
ENSRNOG00000005733	Cpsf2	100	89.655	ENSETEG00000012123	CPSF2	100	89.655	Echinops_telfairi
ENSRNOG00000005733	Cpsf2	52	75.490	ENSEBUG00000012098	cpsf2	93	75.490	Eptatretus_burgeri
ENSRNOG00000005733	Cpsf2	91	96.928	ENSEASG00005021193	CPSF2	100	96.928	Equus_asinus_asinus
ENSRNOG00000005733	Cpsf2	100	98.338	ENSECAG00000023935	CPSF2	100	98.338	Equus_caballus
ENSRNOG00000005733	Cpsf2	100	83.814	ENSELUG00000008442	cpsf2	100	83.814	Esox_lucius
ENSRNOG00000005733	Cpsf2	100	98.465	ENSFCAG00000007886	CPSF2	100	98.465	Felis_catus
ENSRNOG00000005733	Cpsf2	100	96.169	ENSFALG00000002412	CPSF2	100	96.169	Ficedula_albicollis
ENSRNOG00000005733	Cpsf2	100	98.465	ENSFDAG00000006327	CPSF2	100	98.465	Fukomys_damarensis
ENSRNOG00000005733	Cpsf2	96	84.314	ENSFHEG00000015465	cpsf2	98	84.575	Fundulus_heteroclitus
ENSRNOG00000005733	Cpsf2	100	83.207	ENSGMOG00000008761	cpsf2	100	83.207	Gadus_morhua
ENSRNOG00000005733	Cpsf2	100	95.402	ENSGALG00000010783	CPSF2	100	95.913	Gallus_gallus
ENSRNOG00000005733	Cpsf2	100	85.298	ENSGAFG00000001407	cpsf2	100	85.298	Gambusia_affinis
ENSRNOG00000005733	Cpsf2	100	84.157	ENSGACG00000008418	cpsf2	100	84.157	Gasterosteus_aculeatus
ENSRNOG00000005733	Cpsf2	100	95.913	ENSGAGG00000008287	CPSF2	100	95.913	Gopherus_agassizii
ENSRNOG00000005733	Cpsf2	100	98.338	ENSGGOG00000011799	CPSF2	100	98.338	Gorilla_gorilla
ENSRNOG00000005733	Cpsf2	100	84.918	ENSHBUG00000023466	cpsf2	100	84.918	Haplochromis_burtoni
ENSRNOG00000005733	Cpsf2	100	98.338	ENSHGLG00000018311	CPSF2	100	98.338	Heterocephalus_glaber_female
ENSRNOG00000005733	Cpsf2	100	98.338	ENSHGLG00100016460	CPSF2	100	98.338	Heterocephalus_glaber_male
ENSRNOG00000005733	Cpsf2	100	84.537	ENSHCOG00000019527	cpsf2	98	84.537	Hippocampus_comes
ENSRNOG00000005733	Cpsf2	100	85.260	ENSIPUG00000020857	cpsf2	100	85.260	Ictalurus_punctatus
ENSRNOG00000005733	Cpsf2	100	98.465	ENSSTOG00000009528	CPSF2	100	98.465	Ictidomys_tridecemlineatus
ENSRNOG00000005733	Cpsf2	100	98.593	ENSJJAG00000017925	Cpsf2	100	98.593	Jaculus_jaculus
ENSRNOG00000005733	Cpsf2	100	84.411	ENSKMAG00000019429	cpsf2	100	84.411	Kryptolebias_marmoratus
ENSRNOG00000005733	Cpsf2	95	83.668	ENSLBEG00000011585	cpsf2	100	83.824	Labrus_bergylta
ENSRNOG00000005733	Cpsf2	100	89.783	ENSLACG00000019024	CPSF2	100	90.038	Latimeria_chalumnae
ENSRNOG00000005733	Cpsf2	100	86.946	ENSLOCG00000014102	cpsf2	100	86.946	Lepisosteus_oculatus
ENSRNOG00000005733	Cpsf2	100	98.087	ENSLAFG00000004891	CPSF2	100	98.087	Loxodonta_africana
ENSRNOG00000005733	Cpsf2	100	98.465	ENSMFAG00000041212	CPSF2	100	98.465	Macaca_fascicularis
ENSRNOG00000005733	Cpsf2	100	98.465	ENSMMUG00000000699	CPSF2	100	98.465	Macaca_mulatta
ENSRNOG00000005733	Cpsf2	100	98.465	ENSMNEG00000031584	CPSF2	100	98.465	Macaca_nemestrina
ENSRNOG00000005733	Cpsf2	100	98.465	ENSMLEG00000029394	CPSF2	100	98.465	Mandrillus_leucophaeus
ENSRNOG00000005733	Cpsf2	100	85.551	ENSMAMG00000004235	cpsf2	100	85.551	Mastacembelus_armatus
ENSRNOG00000005733	Cpsf2	100	85.044	ENSMZEG00005001769	cpsf2	100	85.044	Maylandia_zebra
ENSRNOG00000005733	Cpsf2	100	95.408	ENSMGAG00000013122	CPSF2	100	95.918	Meleagris_gallopavo
ENSRNOG00000005733	Cpsf2	100	98.721	ENSMAUG00000015160	Cpsf2	100	98.721	Mesocricetus_auratus
ENSRNOG00000005733	Cpsf2	100	98.593	ENSMICG00000016441	CPSF2	100	98.593	Microcebus_murinus
ENSRNOG00000005733	Cpsf2	100	98.849	ENSMOCG00000015372	Cpsf2	100	98.849	Microtus_ochrogaster
ENSRNOG00000005733	Cpsf2	100	80.989	ENSMMOG00000015590	cpsf2	100	80.989	Mola_mola
ENSRNOG00000005733	Cpsf2	100	97.954	ENSMODG00000002042	CPSF2	100	97.954	Monodelphis_domestica
ENSRNOG00000005733	Cpsf2	100	82.510	ENSMALG00000022275	cpsf2	100	82.510	Monopterus_albus
ENSRNOG00000005733	Cpsf2	100	99.105	ENSMUSG00000041781	Cpsf2	100	99.105	Mus_musculus
ENSRNOG00000005733	Cpsf2	100	99.361	MGP_PahariEiJ_G0029791	Cpsf2	100	99.361	Mus_pahari
ENSRNOG00000005733	Cpsf2	100	99.105	MGP_SPRETEiJ_G0018877	Cpsf2	100	99.105	Mus_spretus
ENSRNOG00000005733	Cpsf2	100	98.465	ENSMPUG00000007617	CPSF2	98	98.465	Mustela_putorius_furo
ENSRNOG00000005733	Cpsf2	100	98.082	ENSMLUG00000005570	CPSF2	100	98.082	Myotis_lucifugus
ENSRNOG00000005733	Cpsf2	100	99.105	ENSNGAG00000020312	Cpsf2	100	99.105	Nannospalax_galili
ENSRNOG00000005733	Cpsf2	100	85.425	ENSNBRG00000022402	cpsf2	100	85.425	Neolamprologus_brichardi
ENSRNOG00000005733	Cpsf2	100	97.698	ENSNLEG00000017132	CPSF2	100	97.698	Nomascus_leucogenys
ENSRNOG00000005733	Cpsf2	91	99.029	ENSMEUG00000008138	CPSF2	91	99.029	Notamacropus_eugenii
ENSRNOG00000005733	Cpsf2	94	90.984	ENSOPRG00000008484	-	100	90.984	Ochotona_princeps
ENSRNOG00000005733	Cpsf2	100	98.593	ENSODEG00000008682	CPSF2	100	98.593	Octodon_degus
ENSRNOG00000005733	Cpsf2	100	85.678	ENSONIG00000005901	cpsf2	100	85.678	Oreochromis_niloticus
ENSRNOG00000005733	Cpsf2	100	97.315	ENSOANG00000003822	CPSF2	100	97.315	Ornithorhynchus_anatinus
ENSRNOG00000005733	Cpsf2	100	98.465	ENSOCUG00000005713	CPSF2	100	98.465	Oryctolagus_cuniculus
ENSRNOG00000005733	Cpsf2	100	79.721	ENSORLG00000011628	cpsf2	100	79.721	Oryzias_latipes
ENSRNOG00000005733	Cpsf2	100	84.411	ENSORLG00020016980	cpsf2	100	84.411	Oryzias_latipes_hni
ENSRNOG00000005733	Cpsf2	100	84.411	ENSORLG00015011910	cpsf2	100	84.411	Oryzias_latipes_hsok
ENSRNOG00000005733	Cpsf2	100	83.904	ENSOMEG00000022876	cpsf2	100	83.904	Oryzias_melastigma
ENSRNOG00000005733	Cpsf2	100	95.536	ENSOARG00000012889	CPSF2	100	95.536	Ovis_aries
ENSRNOG00000005733	Cpsf2	100	98.338	ENSPPAG00000039666	CPSF2	100	98.338	Pan_paniscus
ENSRNOG00000005733	Cpsf2	99	98.464	ENSPPRG00000010869	CPSF2	100	98.464	Panthera_pardus
ENSRNOG00000005733	Cpsf2	100	98.465	ENSPTIG00000021202	CPSF2	100	98.465	Panthera_tigris_altaica
ENSRNOG00000005733	Cpsf2	100	98.338	ENSPTRG00000006651	CPSF2	100	98.338	Pan_troglodytes
ENSRNOG00000005733	Cpsf2	100	98.465	ENSPANG00000017417	CPSF2	100	98.465	Papio_anubis
ENSRNOG00000005733	Cpsf2	100	81.703	ENSPKIG00000021453	cpsf2	100	81.703	Paramormyrops_kingsleyae
ENSRNOG00000005733	Cpsf2	100	95.275	ENSPSIG00000006289	CPSF2	100	95.275	Pelodiscus_sinensis
ENSRNOG00000005733	Cpsf2	76	80.066	ENSPMGG00000002511	cpsf2	100	80.233	Periophthalmus_magnuspinnatus
ENSRNOG00000005733	Cpsf2	100	99.105	ENSPEMG00000007917	Cpsf2	100	99.105	Peromyscus_maniculatus_bairdii
ENSRNOG00000005733	Cpsf2	100	74.210	ENSPMAG00000006205	cpsf2	100	74.210	Petromyzon_marinus
ENSRNOG00000005733	Cpsf2	100	97.954	ENSPCIG00000011393	CPSF2	100	97.954	Phascolarctos_cinereus
ENSRNOG00000005733	Cpsf2	100	85.171	ENSPFOG00000018648	cpsf2	100	85.171	Poecilia_formosa
ENSRNOG00000005733	Cpsf2	100	85.171	ENSPLAG00000019199	cpsf2	99	85.171	Poecilia_latipinna
ENSRNOG00000005733	Cpsf2	96	85.526	ENSPMEG00000012100	cpsf2	100	84.893	Poecilia_mexicana
ENSRNOG00000005733	Cpsf2	100	85.298	ENSPREG00000008960	cpsf2	100	85.298	Poecilia_reticulata
ENSRNOG00000005733	Cpsf2	63	97.782	ENSPPYG00000029685	-	100	97.782	Pongo_abelii
ENSRNOG00000005733	Cpsf2	100	97.954	ENSPCAG00000012477	CPSF2	100	97.954	Procavia_capensis
ENSRNOG00000005733	Cpsf2	100	98.338	ENSPCOG00000026387	CPSF2	100	98.338	Propithecus_coquereli
ENSRNOG00000005733	Cpsf2	65	100.000	ENSPVAG00000004223	CPSF2	65	100.000	Pteropus_vampyrus
ENSRNOG00000005733	Cpsf2	100	85.063	ENSPNYG00000023356	cpsf2	100	85.063	Pundamilia_nyererei
ENSRNOG00000005733	Cpsf2	100	86.404	ENSPNAG00000001849	cpsf2	100	86.404	Pygocentrus_nattereri
ENSRNOG00000005733	Cpsf2	100	98.465	ENSRBIG00000044792	CPSF2	100	98.465	Rhinopithecus_bieti
ENSRNOG00000005733	Cpsf2	100	98.465	ENSRROG00000034875	CPSF2	100	98.465	Rhinopithecus_roxellana
ENSRNOG00000005733	Cpsf2	100	98.338	ENSSBOG00000024571	CPSF2	100	98.338	Saimiri_boliviensis_boliviensis
ENSRNOG00000005733	Cpsf2	100	98.082	ENSSHAG00000010458	CPSF2	100	98.082	Sarcophilus_harrisii
ENSRNOG00000005733	Cpsf2	100	86.785	ENSSFOG00015002117	cpsf2	100	86.785	Scleropages_formosus
ENSRNOG00000005733	Cpsf2	100	83.650	ENSSMAG00000002001	cpsf2	100	83.650	Scophthalmus_maximus
ENSRNOG00000005733	Cpsf2	100	85.805	ENSSDUG00000004084	cpsf2	100	85.805	Seriola_dumerili
ENSRNOG00000005733	Cpsf2	100	85.298	ENSSLDG00000024330	cpsf2	100	85.298	Seriola_lalandi_dorsalis
ENSRNOG00000005733	Cpsf2	58	100.000	ENSSARG00000009784	-	63	100.000	Sorex_araneus
ENSRNOG00000005733	Cpsf2	100	95.147	ENSSPUG00000013485	CPSF2	100	95.147	Sphenodon_punctatus
ENSRNOG00000005733	Cpsf2	100	84.791	ENSSPAG00000013284	cpsf2	100	84.791	Stegastes_partitus
ENSRNOG00000005733	Cpsf2	100	98.338	ENSSSCG00000002447	CPSF2	100	98.338	Sus_scrofa
ENSRNOG00000005733	Cpsf2	100	96.296	ENSTGUG00000012571	-	100	96.296	Taeniopygia_guttata
ENSRNOG00000005733	Cpsf2	100	84.157	ENSTRUG00000003742	cpsf2	100	84.157	Takifugu_rubripes
ENSRNOG00000005733	Cpsf2	100	82.933	ENSTNIG00000012228	cpsf2	100	83.692	Tetraodon_nigroviridis
ENSRNOG00000005733	Cpsf2	91	100.000	ENSTBEG00000004530	CPSF2	94	100.000	Tupaia_belangeri
ENSRNOG00000005733	Cpsf2	88	97.917	ENSTTRG00000008697	CPSF2	88	97.917	Tursiops_truncatus
ENSRNOG00000005733	Cpsf2	100	98.593	ENSUAMG00000028071	CPSF2	100	98.593	Ursus_americanus
ENSRNOG00000005733	Cpsf2	100	98.593	ENSUMAG00000005029	CPSF2	100	98.593	Ursus_maritimus
ENSRNOG00000005733	Cpsf2	99	98.464	ENSVPAG00000003503	CPSF2	100	98.464	Vicugna_pacos
ENSRNOG00000005733	Cpsf2	100	98.465	ENSVVUG00000024642	CPSF2	100	98.465	Vulpes_vulpes
ENSRNOG00000005733	Cpsf2	100	91.699	ENSXETG00000010289	cpsf2	100	91.699	Xenopus_tropicalis
ENSRNOG00000005733	Cpsf2	100	85.551	ENSXCOG00000001764	cpsf2	100	85.551	Xiphophorus_couchianus
ENSRNOG00000005733	Cpsf2	100	85.678	ENSXMAG00000017048	cpsf2	100	85.678	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	IEA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISO	Component
GO:0006378	mRNA polyadenylation	-	IEA	Process
GO:0006379	mRNA cleavage	-	IEA	Process
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	-	IEA	Process
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	-	ISO	Process
GO:0008150	biological_process	-	ND	Process