EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005823 (Gene tree)
Gene ID: 314713
Gene Symbol: Utp20
Alias: LOC314713|RGD1560606
Full Name: UTP20 small subunit processome component
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 81118 bases
Position: chr7:29296963-29378080
Accession: 1560606
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008317	DRIM	PF07539.12	1.8e-174	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008317	-	8824	XM_006241227	ENSRNOP00000008317	2788 (aa)	XP_006241289	F1LXT3

Gene Model

Click here to download ENSRNOG00000005823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005823's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005823	Utp20	100	85.878	ENSG00000120800	UTP20	100	85.791	Homo_sapiens
ENSRNOG00000005823	Utp20	100	55.930	ENSAPOG00000002429	utp20	99	56.068	Acanthochromis_polyacanthus
ENSRNOG00000005823	Utp20	100	85.403	ENSAMEG00000016416	UTP20	100	85.403	Ailuropoda_melanoleuca
ENSRNOG00000005823	Utp20	100	55.896	ENSACIG00000007987	utp20	99	55.722	Amphilophus_citrinellus
ENSRNOG00000005823	Utp20	60	57.007	ENSAOCG00000015055	utp20	96	56.897	Amphiprion_ocellaris
ENSRNOG00000005823	Utp20	100	56.083	ENSAPEG00000011605	utp20	99	56.404	Amphiprion_percula
ENSRNOG00000005823	Utp20	98	54.595	ENSATEG00000005601	utp20	99	55.540	Anabas_testudineus
ENSRNOG00000005823	Utp20	99	67.596	ENSAPLG00000015651	UTP20	100	67.631	Anas_platyrhynchos
ENSRNOG00000005823	Utp20	100	66.916	ENSACAG00000011671	UTP20	100	66.951	Anolis_carolinensis
ENSRNOG00000005823	Utp20	100	83.399	ENSANAG00000027152	UTP20	100	83.387	Aotus_nancymaae
ENSRNOG00000005823	Utp20	95	58.369	ENSACLG00000008064	utp20	99	58.369	Astatotilapia_calliptera
ENSRNOG00000005823	Utp20	100	55.599	ENSAMXG00000021039	utp20	99	55.607	Astyanax_mexicanus
ENSRNOG00000005823	Utp20	100	85.346	ENSBTAG00000003239	UTP20	100	85.136	Bos_taurus
ENSRNOG00000005823	Utp20	100	84.839	ENSCJAG00000001913	UTP20	100	84.825	Callithrix_jacchus
ENSRNOG00000005823	Utp20	100	84.756	ENSCAFG00000006964	UTP20	100	84.756	Canis_familiaris
ENSRNOG00000005823	Utp20	100	84.792	ENSCAFG00020024305	UTP20	100	84.792	Canis_lupus_dingo
ENSRNOG00000005823	Utp20	100	85.029	ENSCHIG00000009221	UTP20	100	84.318	Capra_hircus
ENSRNOG00000005823	Utp20	100	83.405	ENSTSYG00000003040	UTP20	100	83.435	Carlito_syrichta
ENSRNOG00000005823	Utp20	99	74.326	ENSCAPG00000014920	UTP20	100	73.932	Cavia_aperea
ENSRNOG00000005823	Utp20	100	76.774	ENSCPOG00000003129	UTP20	100	76.450	Cavia_porcellus
ENSRNOG00000005823	Utp20	100	85.412	ENSCCAG00000031422	UTP20	100	85.397	Cebus_capucinus
ENSRNOG00000005823	Utp20	100	82.797	ENSCATG00000035636	UTP20	100	82.714	Cercocebus_atys
ENSRNOG00000005823	Utp20	100	79.993	ENSCLAG00000011569	UTP20	100	79.814	Chinchilla_lanigera
ENSRNOG00000005823	Utp20	100	85.520	ENSCSAG00000003388	UTP20	100	85.433	Chlorocebus_sabaeus
ENSRNOG00000005823	Utp20	92	92.424	ENSCHOG00000003532	UTP20	94	92.424	Choloepus_hoffmanni
ENSRNOG00000005823	Utp20	95	69.110	ENSCPBG00000004844	UTP20	99	69.314	Chrysemys_picta_bellii
ENSRNOG00000005823	Utp20	100	82.115	ENSCANG00000034768	UTP20	100	83.277	Colobus_angolensis_palliatus
ENSRNOG00000005823	Utp20	100	90.606	ENSCGRG00001017151	Utp20	100	90.606	Cricetulus_griseus_chok1gshd
ENSRNOG00000005823	Utp20	100	90.140	ENSCGRG00000008595	Utp20	100	90.140	Cricetulus_griseus_crigri
ENSRNOG00000005823	Utp20	98	53.273	ENSCSEG00000014760	utp20	99	53.601	Cynoglossus_semilaevis
ENSRNOG00000005823	Utp20	99	53.565	ENSCVAG00000001727	utp20	99	53.958	Cyprinodon_variegatus
ENSRNOG00000005823	Utp20	99	56.270	ENSDARG00000099280	utp20	99	56.458	Danio_rerio
ENSRNOG00000005823	Utp20	100	83.286	ENSDNOG00000016845	UTP20	100	83.286	Dasypus_novemcinctus
ENSRNOG00000005823	Utp20	97	85.898	ENSDORG00000014762	Utp20	99	85.957	Dipodomys_ordii
ENSRNOG00000005823	Utp20	94	87.004	ENSETEG00000019983	UTP20	94	88.546	Echinops_telfairi
ENSRNOG00000005823	Utp20	100	85.326	ENSEASG00005019981	UTP20	100	85.361	Equus_asinus_asinus
ENSRNOG00000005823	Utp20	100	85.576	ENSECAG00000006876	UTP20	100	85.612	Equus_caballus
ENSRNOG00000005823	Utp20	72	89.831	ENSEEUG00000003774	UTP20	75	86.957	Erinaceus_europaeus
ENSRNOG00000005823	Utp20	100	55.910	ENSELUG00000000798	utp20	99	56.101	Esox_lucius
ENSRNOG00000005823	Utp20	100	84.941	ENSFCAG00000006150	UTP20	100	85.013	Felis_catus
ENSRNOG00000005823	Utp20	94	66.011	ENSFALG00000011135	UTP20	100	66.100	Ficedula_albicollis
ENSRNOG00000005823	Utp20	100	66.893	ENSFDAG00000007567	UTP20	98	85.156	Fukomys_damarensis
ENSRNOG00000005823	Utp20	98	52.150	ENSFHEG00000004142	utp20	99	54.685	Fundulus_heteroclitus
ENSRNOG00000005823	Utp20	99	51.641	ENSGMOG00000006762	utp20	100	52.121	Gadus_morhua
ENSRNOG00000005823	Utp20	100	67.391	ENSGALG00000011643	UTP20	100	67.081	Gallus_gallus
ENSRNOG00000005823	Utp20	97	53.092	ENSGAFG00000006986	utp20	99	53.411	Gambusia_affinis
ENSRNOG00000005823	Utp20	100	54.756	ENSGACG00000019092	utp20	100	54.720	Gasterosteus_aculeatus
ENSRNOG00000005823	Utp20	67	69.427	ENSGAGG00000011169	UTP20	97	69.157	Gopherus_agassizii
ENSRNOG00000005823	Utp20	100	84.957	ENSGGOG00000004904	UTP20	100	84.871	Gorilla_gorilla
ENSRNOG00000005823	Utp20	100	55.366	ENSHBUG00000010613	utp20	99	55.516	Haplochromis_burtoni
ENSRNOG00000005823	Utp20	100	79.577	ENSHGLG00000006422	UTP20	100	79.341	Heterocephalus_glaber_female
ENSRNOG00000005823	Utp20	100	77.714	ENSHGLG00100001086	UTP20	100	77.479	Heterocephalus_glaber_male
ENSRNOG00000005823	Utp20	100	53.293	ENSHCOG00000005421	utp20	99	54.275	Hippocampus_comes
ENSRNOG00000005823	Utp20	100	55.630	ENSIPUG00000013717	utp20	99	55.882	Ictalurus_punctatus
ENSRNOG00000005823	Utp20	100	85.771	ENSSTOG00000015995	UTP20	100	85.771	Ictidomys_tridecemlineatus
ENSRNOG00000005823	Utp20	100	84.844	ENSJJAG00000019321	Utp20	100	84.844	Jaculus_jaculus
ENSRNOG00000005823	Utp20	100	53.646	ENSKMAG00000005972	utp20	99	53.397	Kryptolebias_marmoratus
ENSRNOG00000005823	Utp20	98	53.341	ENSLBEG00000000781	utp20	99	54.010	Labrus_bergylta
ENSRNOG00000005823	Utp20	79	63.412	ENSLACG00000010098	UTP20	100	63.547	Latimeria_chalumnae
ENSRNOG00000005823	Utp20	93	59.515	ENSLOCG00000015197	utp20	99	59.468	Lepisosteus_oculatus
ENSRNOG00000005823	Utp20	100	83.524	ENSLAFG00000012983	UTP20	100	83.738	Loxodonta_africana
ENSRNOG00000005823	Utp20	100	85.627	ENSMFAG00000037766	UTP20	100	85.540	Macaca_fascicularis
ENSRNOG00000005823	Utp20	100	85.771	ENSMMUG00000012891	UTP20	100	85.684	Macaca_mulatta
ENSRNOG00000005823	Utp20	100	83.513	ENSMNEG00000037418	UTP20	100	83.429	Macaca_nemestrina
ENSRNOG00000005823	Utp20	100	83.345	ENSMLEG00000029148	UTP20	100	83.262	Mandrillus_leucophaeus
ENSRNOG00000005823	Utp20	100	54.810	ENSMAMG00000002063	utp20	99	55.445	Mastacembelus_armatus
ENSRNOG00000005823	Utp20	100	55.919	ENSMZEG00005018123	utp20	99	56.077	Maylandia_zebra
ENSRNOG00000005823	Utp20	100	67.166	ENSMGAG00000011726	UTP20	100	66.891	Meleagris_gallopavo
ENSRNOG00000005823	Utp20	64	90.328	ENSMAUG00000011898	Utp20	100	90.328	Mesocricetus_auratus
ENSRNOG00000005823	Utp20	100	82.049	ENSMICG00000015736	UTP20	100	81.968	Microcebus_murinus
ENSRNOG00000005823	Utp20	100	87.805	ENSMOCG00000015242	Utp20	100	87.805	Microtus_ochrogaster
ENSRNOG00000005823	Utp20	100	52.736	ENSMMOG00000003360	utp20	100	52.820	Mola_mola
ENSRNOG00000005823	Utp20	100	72.851	ENSMODG00000003141	UTP20	100	72.851	Monodelphis_domestica
ENSRNOG00000005823	Utp20	100	55.029	ENSMALG00000002723	utp20	99	54.922	Monopterus_albus
ENSRNOG00000005823	Utp20	100	93.902	MGP_CAROLIEiJ_G0015713	Utp20	100	93.902	Mus_caroli
ENSRNOG00000005823	Utp20	100	94.263	ENSMUSG00000004356	Utp20	100	94.442	Mus_musculus
ENSRNOG00000005823	Utp20	100	93.938	MGP_PahariEiJ_G0031372	Utp20	100	93.938	Mus_pahari
ENSRNOG00000005823	Utp20	100	94.265	MGP_SPRETEiJ_G0016531	Utp20	98	97.619	Mus_spretus
ENSRNOG00000005823	Utp20	100	85.090	ENSMPUG00000011641	UTP20	100	85.018	Mustela_putorius_furo
ENSRNOG00000005823	Utp20	100	85.102	ENSMLUG00000002313	UTP20	100	85.030	Myotis_lucifugus
ENSRNOG00000005823	Utp20	100	88.459	ENSNGAG00000013738	Utp20	100	88.459	Nannospalax_galili
ENSRNOG00000005823	Utp20	80	72.308	ENSNBRG00000019464	utp20	99	72.308	Neolamprologus_brichardi
ENSRNOG00000005823	Utp20	100	85.586	ENSNLEG00000006166	UTP20	100	85.499	Nomascus_leucogenys
ENSRNOG00000005823	Utp20	89	100.000	ENSMEUG00000015457	UTP20	91	100.000	Notamacropus_eugenii
ENSRNOG00000005823	Utp20	86	93.631	ENSOPRG00000010546	UTP20	87	93.631	Ochotona_princeps
ENSRNOG00000005823	Utp20	100	80.280	ENSODEG00000013411	UTP20	100	80.280	Octodon_degus
ENSRNOG00000005823	Utp20	100	56.128	ENSONIG00000009910	utp20	100	55.481	Oreochromis_niloticus
ENSRNOG00000005823	Utp20	99	71.546	ENSOANG00000005578	UTP20	99	71.627	Ornithorhynchus_anatinus
ENSRNOG00000005823	Utp20	100	85.331	ENSOCUG00000010475	UTP20	100	85.331	Oryctolagus_cuniculus
ENSRNOG00000005823	Utp20	94	54.430	ENSORLG00000008900	utp20	99	54.430	Oryzias_latipes
ENSRNOG00000005823	Utp20	94	54.430	ENSORLG00020005879	utp20	99	54.430	Oryzias_latipes_hni
ENSRNOG00000005823	Utp20	98	51.113	ENSORLG00015002843	utp20	99	51.598	Oryzias_latipes_hsok
ENSRNOG00000005823	Utp20	98	52.327	ENSOMEG00000023583	utp20	99	53.311	Oryzias_melastigma
ENSRNOG00000005823	Utp20	100	83.757	ENSOGAG00000015130	UTP20	100	83.691	Otolemur_garnettii
ENSRNOG00000005823	Utp20	100	84.814	ENSOARG00000014722	UTP20	100	84.640	Ovis_aries
ENSRNOG00000005823	Utp20	100	85.735	ENSPPAG00000001381	UTP20	100	85.719	Pan_paniscus
ENSRNOG00000005823	Utp20	100	85.228	ENSPPRG00000001026	UTP20	100	85.228	Panthera_pardus
ENSRNOG00000005823	Utp20	100	85.120	ENSPTIG00000020972	UTP20	100	85.120	Panthera_tigris_altaica
ENSRNOG00000005823	Utp20	100	85.806	ENSPTRG00000005349	UTP20	100	85.719	Pan_troglodytes
ENSRNOG00000005823	Utp20	100	85.699	ENSPANG00000020388	UTP20	100	85.612	Papio_anubis
ENSRNOG00000005823	Utp20	100	55.627	ENSPKIG00000007196	utp20	99	55.334	Paramormyrops_kingsleyae
ENSRNOG00000005823	Utp20	94	69.216	ENSPSIG00000016689	UTP20	100	69.103	Pelodiscus_sinensis
ENSRNOG00000005823	Utp20	100	54.452	ENSPMGG00000004066	utp20	99	54.865	Periophthalmus_magnuspinnatus
ENSRNOG00000005823	Utp20	100	89.957	ENSPEMG00000024120	Utp20	100	89.645	Peromyscus_maniculatus_bairdii
ENSRNOG00000005823	Utp20	100	71.991	ENSPCIG00000009298	UTP20	100	72.129	Phascolarctos_cinereus
ENSRNOG00000005823	Utp20	93	53.625	ENSPFOG00000003312	utp20	100	53.766	Poecilia_formosa
ENSRNOG00000005823	Utp20	98	52.461	ENSPLAG00000012874	utp20	99	54.784	Poecilia_latipinna
ENSRNOG00000005823	Utp20	98	52.007	ENSPMEG00000005915	utp20	99	54.057	Poecilia_mexicana
ENSRNOG00000005823	Utp20	98	52.770	ENSPREG00000013285	utp20	99	53.105	Poecilia_reticulata
ENSRNOG00000005823	Utp20	88	85.493	ENSPPYG00000004871	UTP20	100	85.493	Pongo_abelii
ENSRNOG00000005823	Utp20	83	91.919	ENSPCAG00000012791	UTP20	85	91.919	Procavia_capensis
ENSRNOG00000005823	Utp20	96	84.861	ENSPCOG00000024948	UTP20	100	84.943	Propithecus_coquereli
ENSRNOG00000005823	Utp20	100	83.441	ENSPVAG00000008113	UTP20	100	83.321	Pteropus_vampyrus
ENSRNOG00000005823	Utp20	100	55.044	ENSPNYG00000011561	utp20	99	55.689	Pundamilia_nyererei
ENSRNOG00000005823	Utp20	100	55.953	ENSPNAG00000006176	utp20	99	55.892	Pygocentrus_nattereri
ENSRNOG00000005823	Utp20	100	83.685	ENSRBIG00000025384	UTP20	100	83.601	Rhinopithecus_bieti
ENSRNOG00000005823	Utp20	100	85.520	ENSRROG00000041254	UTP20	100	85.433	Rhinopithecus_roxellana
ENSRNOG00000005823	Utp20	100	85.233	ENSSBOG00000035762	UTP20	100	85.218	Saimiri_boliviensis_boliviensis
ENSRNOG00000005823	Utp20	98	69.322	ENSSHAG00000002298	UTP20	99	69.200	Sarcophilus_harrisii
ENSRNOG00000005823	Utp20	100	58.096	ENSSFOG00015001674	utp20	100	58.238	Scleropages_formosus
ENSRNOG00000005823	Utp20	98	52.329	ENSSMAG00000016460	utp20	99	52.796	Scophthalmus_maximus
ENSRNOG00000005823	Utp20	100	56.330	ENSSDUG00000013730	utp20	99	56.404	Seriola_dumerili
ENSRNOG00000005823	Utp20	100	56.243	ENSSLDG00000012844	utp20	99	56.407	Seriola_lalandi_dorsalis
ENSRNOG00000005823	Utp20	65	96.296	ENSSARG00000002796	-	65	96.296	Sorex_araneus
ENSRNOG00000005823	Utp20	99	66.893	ENSSPUG00000004513	UTP20	99	66.798	Sphenodon_punctatus
ENSRNOG00000005823	Utp20	100	55.872	ENSSPAG00000014674	utp20	99	56.108	Stegastes_partitus
ENSRNOG00000005823	Utp20	100	85.668	ENSSSCG00000000869	UTP20	100	85.591	Sus_scrofa
ENSRNOG00000005823	Utp20	76	67.288	ENSTGUG00000009053	-	100	67.460	Taeniopygia_guttata
ENSRNOG00000005823	Utp20	99	55.552	ENSTRUG00000005849	utp20	99	55.642	Takifugu_rubripes
ENSRNOG00000005823	Utp20	100	53.789	ENSTNIG00000006921	utp20	100	54.214	Tetraodon_nigroviridis
ENSRNOG00000005823	Utp20	90	78.637	ENSTBEG00000011917	UTP20	92	78.637	Tupaia_belangeri
ENSRNOG00000005823	Utp20	99	81.556	ENSTTRG00000017195	UTP20	100	81.441	Tursiops_truncatus
ENSRNOG00000005823	Utp20	100	85.535	ENSUAMG00000016363	UTP20	100	85.535	Ursus_americanus
ENSRNOG00000005823	Utp20	100	84.819	ENSUMAG00000000077	UTP20	100	84.819	Ursus_maritimus
ENSRNOG00000005823	Utp20	89	85.441	ENSVPAG00000011620	UTP20	92	85.441	Vicugna_pacos
ENSRNOG00000005823	Utp20	100	84.505	ENSVVUG00000018110	UTP20	100	84.433	Vulpes_vulpes
ENSRNOG00000005823	Utp20	98	62.128	ENSXETG00000032346	UTP20	100	61.903	Xenopus_tropicalis
ENSRNOG00000005823	Utp20	98	52.482	ENSXMAG00000006503	utp20	99	52.871	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006364	rRNA processing	-	ISO	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component