EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000005877 (Gene tree)
Gene ID: 313867
Gene Symbol: Lrpprc
Alias: LOC313867|Lrp157
Full Name: leucine-rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 82850 bases
Position: chr6:7984019-8066868
Accession: 1306575
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008200	PPR	PF01535.20	2.4e-27	1	6
ENSRNOP00000008200	PPR	PF01535.20	2.4e-27	2	6
ENSRNOP00000008200	PPR	PF01535.20	2.4e-27	3	6
ENSRNOP00000008200	PPR	PF01535.20	2.4e-27	4	6
ENSRNOP00000008200	PPR	PF01535.20	2.4e-27	5	6
ENSRNOP00000008200	PPR	PF01535.20	2.4e-27	6	6

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008200	-	4328	-	ENSRNOP00000008200	1392 (aa)	-	F1LM33

Gene Model

Click here to download ENSRNOG00000005877's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005877's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000005877	Lrpprc	99	50.805	ENSAPOG00000016610	lrpprc	94	51.846	Acanthochromis_polyacanthus
ENSRNOG00000005877	Lrpprc	98	77.493	ENSAMEG00000005852	LRPPRC	100	76.675	Ailuropoda_melanoleuca
ENSRNOG00000005877	Lrpprc	99	48.269	ENSACIG00000009604	lrpprc	94	49.440	Amphilophus_citrinellus
ENSRNOG00000005877	Lrpprc	99	50.105	ENSAOCG00000005886	lrpprc	94	51.031	Amphiprion_ocellaris
ENSRNOG00000005877	Lrpprc	97	54.127	ENSAPEG00000002937	lrpprc	94	58.597	Amphiprion_percula
ENSRNOG00000005877	Lrpprc	87	59.955	ENSATEG00000010555	lrpprc	93	59.955	Anabas_testudineus
ENSRNOG00000005877	Lrpprc	96	62.066	ENSACAG00000029278	LRPPRC	96	62.066	Anolis_carolinensis
ENSRNOG00000005877	Lrpprc	100	77.253	ENSANAG00000027440	LRPPRC	100	77.253	Aotus_nancymaae
ENSRNOG00000005877	Lrpprc	96	49.814	ENSACLG00000023712	lrpprc	98	49.814	Astatotilapia_calliptera
ENSRNOG00000005877	Lrpprc	100	76.395	ENSCJAG00000000794	LRPPRC	100	76.395	Callithrix_jacchus
ENSRNOG00000005877	Lrpprc	99	78.736	ENSCHIG00000020173	LRPPRC	99	78.592	Capra_hircus
ENSRNOG00000005877	Lrpprc	96	60.838	ENSCAPG00000013631	LRPPRC	100	60.838	Cavia_aperea
ENSRNOG00000005877	Lrpprc	87	77.778	ENSCPOG00000000204	LRPPRC	100	77.778	Cavia_porcellus
ENSRNOG00000005877	Lrpprc	100	76.631	ENSCCAG00000031900	LRPPRC	100	76.631	Cebus_capucinus
ENSRNOG00000005877	Lrpprc	100	77.182	ENSCATG00000014187	LRPPRC	99	76.281	Cercocebus_atys
ENSRNOG00000005877	Lrpprc	99	76.664	ENSCLAG00000005203	LRPPRC	99	76.664	Chinchilla_lanigera
ENSRNOG00000005877	Lrpprc	100	77.182	ENSCSAG00000013233	LRPPRC	100	77.182	Chlorocebus_sabaeus
ENSRNOG00000005877	Lrpprc	84	75.599	ENSCHOG00000003631	LRPPRC	84	75.599	Choloepus_hoffmanni
ENSRNOG00000005877	Lrpprc	100	73.665	ENSCANG00000034961	LRPPRC	100	73.707	Colobus_angolensis_palliatus
ENSRNOG00000005877	Lrpprc	100	83.477	ENSCGRG00001016261	Lrpprc	100	83.477	Cricetulus_griseus_chok1gshd
ENSRNOG00000005877	Lrpprc	100	83.477	ENSCGRG00000004072	Lrpprc	100	83.477	Cricetulus_griseus_crigri
ENSRNOG00000005877	Lrpprc	96	42.382	ENSCSEG00000003850	lrpprc	83	52.983	Cynoglossus_semilaevis
ENSRNOG00000005877	Lrpprc	99	50.388	ENSCVAG00000012967	lrpprc	99	50.141	Cyprinodon_variegatus
ENSRNOG00000005877	Lrpprc	99	49.199	ENSDARG00000043970	lrpprc	98	48.673	Danio_rerio
ENSRNOG00000005877	Lrpprc	82	57.467	ENSDNOG00000032336	-	100	56.820	Dasypus_novemcinctus
ENSRNOG00000005877	Lrpprc	100	76.361	ENSDNOG00000012594	-	100	76.361	Dasypus_novemcinctus
ENSRNOG00000005877	Lrpprc	100	80.273	ENSDORG00000012233	Lrpprc	100	79.986	Dipodomys_ordii
ENSRNOG00000005877	Lrpprc	99	75.090	ENSETEG00000006657	LRPPRC	99	75.018	Echinops_telfairi
ENSRNOG00000005877	Lrpprc	87	66.802	ENSEEUG00000012340	LRPPRC	93	66.802	Erinaceus_europaeus
ENSRNOG00000005877	Lrpprc	96	49.851	ENSELUG00000012803	lrpprc	98	49.701	Esox_lucius
ENSRNOG00000005877	Lrpprc	99	80.115	ENSFCAG00000013468	LRPPRC	99	80.115	Felis_catus
ENSRNOG00000005877	Lrpprc	96	55.762	ENSFALG00000012738	LRPPRC	99	55.688	Ficedula_albicollis
ENSRNOG00000005877	Lrpprc	100	75.929	ENSFDAG00000015328	LRPPRC	100	75.857	Fukomys_damarensis
ENSRNOG00000005877	Lrpprc	99	49.508	ENSFHEG00000019604	lrpprc	99	49.331	Fundulus_heteroclitus
ENSRNOG00000005877	Lrpprc	96	48.881	ENSGMOG00000008337	lrpprc	96	48.842	Gadus_morhua
ENSRNOG00000005877	Lrpprc	99	50.318	ENSGAFG00000001455	lrpprc	99	50.247	Gambusia_affinis
ENSRNOG00000005877	Lrpprc	99	49.434	ENSGACG00000010679	lrpprc	99	50.481	Gasterosteus_aculeatus
ENSRNOG00000005877	Lrpprc	99	50.105	ENSHBUG00000000393	lrpprc	92	51.405	Haplochromis_burtoni
ENSRNOG00000005877	Lrpprc	100	76.841	ENSHGLG00000006123	LRPPRC	100	76.769	Heterocephalus_glaber_female
ENSRNOG00000005877	Lrpprc	60	77.098	ENSHGLG00100005960	-	100	76.978	Heterocephalus_glaber_male
ENSRNOG00000005877	Lrpprc	97	49.854	ENSHCOG00000002107	lrpprc	95	50.608	Hippocampus_comes
ENSRNOG00000005877	Lrpprc	97	51.079	ENSIPUG00000009406	lrpprc	94	51.544	Ictalurus_punctatus
ENSRNOG00000005877	Lrpprc	100	81.147	ENSSTOG00000011185	LRPPRC	100	81.219	Ictidomys_tridecemlineatus
ENSRNOG00000005877	Lrpprc	100	81.407	ENSJJAG00000020475	Lrpprc	100	81.120	Jaculus_jaculus
ENSRNOG00000005877	Lrpprc	96	48.478	ENSKMAG00000003287	lrpprc	81	48.478	Kryptolebias_marmoratus
ENSRNOG00000005877	Lrpprc	99	45.531	ENSLBEG00000023225	lrpprc	96	54.781	Labrus_bergylta
ENSRNOG00000005877	Lrpprc	100	59.889	ENSLACG00000014030	LRPPRC	99	59.819	Latimeria_chalumnae
ENSRNOG00000005877	Lrpprc	97	57.784	ENSLOCG00000016390	lrpprc	90	58.709	Lepisosteus_oculatus
ENSRNOG00000005877	Lrpprc	99	73.014	ENSLAFG00000008614	LRPPRC	99	73.014	Loxodonta_africana
ENSRNOG00000005877	Lrpprc	100	77.396	ENSMFAG00000041560	LRPPRC	99	76.281	Macaca_fascicularis
ENSRNOG00000005877	Lrpprc	99	76.109	ENSMMUG00000019841	LRPPRC	100	78.642	Macaca_mulatta
ENSRNOG00000005877	Lrpprc	100	77.396	ENSMNEG00000031613	LRPPRC	100	77.396	Macaca_nemestrina
ENSRNOG00000005877	Lrpprc	98	47.763	ENSMAMG00000021835	lrpprc	98	47.783	Mastacembelus_armatus
ENSRNOG00000005877	Lrpprc	96	51.627	ENSMZEG00005027379	lrpprc	94	51.627	Maylandia_zebra
ENSRNOG00000005877	Lrpprc	100	83.836	ENSMAUG00000012118	Lrpprc	100	83.836	Mesocricetus_auratus
ENSRNOG00000005877	Lrpprc	99	79.253	ENSMICG00000010486	LRPPRC	99	79.110	Microcebus_murinus
ENSRNOG00000005877	Lrpprc	100	86.997	ENSMOCG00000006048	Lrpprc	100	86.997	Microtus_ochrogaster
ENSRNOG00000005877	Lrpprc	99	49.399	ENSMMOG00000007830	lrpprc	99	54.579	Mola_mola
ENSRNOG00000005877	Lrpprc	96	67.038	ENSMODG00000000648	LRPPRC	99	67.038	Monodelphis_domestica
ENSRNOG00000005877	Lrpprc	99	49.119	ENSMALG00000001271	lrpprc	99	49.049	Monopterus_albus
ENSRNOG00000005877	Lrpprc	99	77.937	ENSMPUG00000011800	LRPPRC	99	80.336	Mustela_putorius_furo
ENSRNOG00000005877	Lrpprc	99	79.570	ENSMLUG00000010575	LRPPRC	99	79.427	Myotis_lucifugus
ENSRNOG00000005877	Lrpprc	100	83.549	ENSNGAG00000013069	Lrpprc	100	83.549	Nannospalax_galili
ENSRNOG00000005877	Lrpprc	90	56.250	ENSNBRG00000013202	lrpprc	99	56.250	Neolamprologus_brichardi
ENSRNOG00000005877	Lrpprc	100	75.323	ENSNLEG00000016782	LRPPRC	99	76.471	Nomascus_leucogenys
ENSRNOG00000005877	Lrpprc	93	72.874	ENSOPRG00000016774	LRPPRC	93	72.874	Ochotona_princeps
ENSRNOG00000005877	Lrpprc	100	78.105	ENSODEG00000011211	LRPPRC	100	78.033	Octodon_degus
ENSRNOG00000005877	Lrpprc	99	50.496	ENSONIG00000000917	lrpprc	99	50.320	Oreochromis_niloticus
ENSRNOG00000005877	Lrpprc	74	62.712	ENSOANG00000014670	-	100	62.581	Ornithorhynchus_anatinus
ENSRNOG00000005877	Lrpprc	99	79.684	ENSOCUG00000015046	LRPPRC	96	79.684	Oryctolagus_cuniculus
ENSRNOG00000005877	Lrpprc	96	49.702	ENSORLG00000004605	lrpprc	98	47.914	Oryzias_latipes
ENSRNOG00000005877	Lrpprc	92	51.705	ENSORLG00020012536	lrpprc	99	50.994	Oryzias_latipes_hni
ENSRNOG00000005877	Lrpprc	96	49.108	ENSORLG00015018270	lrpprc	93	52.525	Oryzias_latipes_hsok
ENSRNOG00000005877	Lrpprc	99	76.023	ENSOGAG00000012798	LRPPRC	99	75.917	Otolemur_garnettii
ENSRNOG00000005877	Lrpprc	99	78.766	ENSOARG00000006522	LRPPRC	99	78.623	Ovis_aries
ENSRNOG00000005877	Lrpprc	100	73.857	ENSPPAG00000040876	LRPPRC	100	74.286	Pan_paniscus
ENSRNOG00000005877	Lrpprc	99	79.899	ENSPPRG00000006578	LRPPRC	99	79.899	Panthera_pardus
ENSRNOG00000005877	Lrpprc	97	80.562	ENSPTIG00000000933	LRPPRC	96	80.775	Panthera_tigris_altaica
ENSRNOG00000005877	Lrpprc	100	76.184	ENSPTRG00000011880	LRPPRC	100	76.184	Pan_troglodytes
ENSRNOG00000005877	Lrpprc	100	77.039	ENSPANG00000020731	LRPPRC	99	76.091	Papio_anubis
ENSRNOG00000005877	Lrpprc	84	57.666	ENSPKIG00000022232	lrpprc	97	53.502	Paramormyrops_kingsleyae
ENSRNOG00000005877	Lrpprc	61	64.111	ENSPSIG00000006830	-	98	64.144	Pelodiscus_sinensis
ENSRNOG00000005877	Lrpprc	67	45.736	ENSPMGG00000016597	lrpprc	96	45.736	Periophthalmus_magnuspinnatus
ENSRNOG00000005877	Lrpprc	94	45.821	ENSPMAG00000002147	lrpprc	99	45.786	Petromyzon_marinus
ENSRNOG00000005877	Lrpprc	99	49.682	ENSPFOG00000011227	lrpprc	99	49.576	Poecilia_formosa
ENSRNOG00000005877	Lrpprc	99	49.469	ENSPLAG00000004018	lrpprc	99	49.364	Poecilia_latipinna
ENSRNOG00000005877	Lrpprc	99	49.752	ENSPMEG00000016425	lrpprc	99	49.646	Poecilia_mexicana
ENSRNOG00000005877	Lrpprc	99	49.929	ENSPREG00000003662	lrpprc	99	49.753	Poecilia_reticulata
ENSRNOG00000005877	Lrpprc	58	75.592	ENSPPYG00000029532	-	100	75.592	Pongo_abelii
ENSRNOG00000005877	Lrpprc	83	72.193	ENSPCAG00000001430	LRPPRC	84	72.193	Procavia_capensis
ENSRNOG00000005877	Lrpprc	99	76.669	ENSPVAG00000002007	LRPPRC	99	76.669	Pteropus_vampyrus
ENSRNOG00000005877	Lrpprc	99	48.283	ENSPNYG00000000756	lrpprc	90	54.902	Pundamilia_nyererei
ENSRNOG00000005877	Lrpprc	99	52.912	ENSPNAG00000002895	lrpprc	95	53.987	Pygocentrus_nattereri
ENSRNOG00000005877	Lrpprc	100	75.160	ENSRBIG00000031552	LRPPRC	100	75.160	Rhinopithecus_bieti
ENSRNOG00000005877	Lrpprc	100	77.276	ENSSBOG00000011807	LRPPRC	100	77.348	Saimiri_boliviensis_boliviensis
ENSRNOG00000005877	Lrpprc	96	64.116	ENSSHAG00000018725	LRPPRC	99	63.988	Sarcophilus_harrisii
ENSRNOG00000005877	Lrpprc	99	50.415	ENSSFOG00015001042	lrpprc	99	50.347	Scleropages_formosus
ENSRNOG00000005877	Lrpprc	99	50.774	ENSSDUG00000019062	lrpprc	99	50.388	Seriola_dumerili
ENSRNOG00000005877	Lrpprc	99	44.261	ENSSLDG00000023028	lrpprc	99	43.692	Seriola_lalandi_dorsalis
ENSRNOG00000005877	Lrpprc	87	68.616	ENSSARG00000000426	LRPPRC	100	68.616	Sorex_araneus
ENSRNOG00000005877	Lrpprc	99	47.543	ENSSPAG00000000162	lrpprc	99	47.263	Stegastes_partitus
ENSRNOG00000005877	Lrpprc	99	78.853	ENSSSCG00000008452	LRPPRC	99	78.694	Sus_scrofa
ENSRNOG00000005877	Lrpprc	94	55.809	ENSTGUG00000003759	LRPPRC	100	55.809	Taeniopygia_guttata
ENSRNOG00000005877	Lrpprc	99	50.845	ENSTRUG00000008409	lrpprc	91	51.993	Takifugu_rubripes
ENSRNOG00000005877	Lrpprc	99	49.187	ENSTNIG00000007470	lrpprc	99	50.517	Tetraodon_nigroviridis
ENSRNOG00000005877	Lrpprc	99	76.829	ENSTTRG00000006403	LRPPRC	99	76.686	Tursiops_truncatus
ENSRNOG00000005877	Lrpprc	96	74.237	ENSVPAG00000008993	LRPPRC	99	74.013	Vicugna_pacos
ENSRNOG00000005877	Lrpprc	99	58.932	ENSXETG00000009296	lrpprc	99	58.861	Xenopus_tropicalis
ENSRNOG00000005877	Lrpprc	99	47.293	ENSXCOG00000013343	lrpprc	95	52.600	Xiphophorus_couchianus
ENSRNOG00000005877	Lrpprc	99	49.788	ENSXMAG00000018108	lrpprc	99	49.788	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000794	condensed nuclear chromosome	-	IEA	Component
GO:0000794	condensed nuclear chromosome	-	ISO	Component
GO:0000794	condensed nuclear chromosome	-	ISS	Component
GO:0000961	negative regulation of mitochondrial RNA catabolic process	-	IEA	Process
GO:0000961	negative regulation of mitochondrial RNA catabolic process	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005637	nuclear inner membrane	-	IEA	Component
GO:0005640	nuclear outer membrane	-	IEA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005739	mitochondrion	-	ISS	Component
GO:0005856	cytoskeleton	-	ISO	Component
GO:0005856	cytoskeleton	-	ISS	Component
GO:0005874	microtubule	-	IEA	Component
GO:0005874	microtubule	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0031625	ubiquitin protein ligase binding	-	IEA	Function
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0042645	mitochondrial nucleoid	-	IEA	Component
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0048471	perinuclear region of cytoplasm	-	ISS	Component
GO:0048487	beta-tubulin binding	-	IEA	Function
GO:0048487	beta-tubulin binding	-	ISO	Function
GO:0048487	beta-tubulin binding	-	ISS	Function
GO:0051015	actin filament binding	-	ISO	Function
GO:0051015	actin filament binding	-	ISS	Function
GO:0051028	mRNA transport	-	IEA	Process
GO:0070129	regulation of mitochondrial translation	-	IEA	Process
GO:0070129	regulation of mitochondrial translation	-	ISO	Process
GO:1990904	ribonucleoprotein complex	-	IEA	Component
GO:1990904	ribonucleoprotein complex	-	ISO	Component