EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000005982 (Gene tree)
Gene ID
289810
Gene Symbol
C1d
Alias
LOC289810|MGC188504|RGD1560600
Full Name
C1D nuclear receptor co-repressor
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
11593 bases
Position
chr14:100415668-100427260
Accession
1560600
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000008057Sas10_Utp3PF04000.156.2e-1811
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000008057-2488XM_006251516ENSRNOP00000008057141 (aa)XP_006251578B5DEI6
ENSRNOT00000089875-1021--- (aa)--
Gene Model
Click here to download ENSRNOG00000005982's gene model file
Pathways
Pathway IDPathway NameSource
rno03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000005982's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000005982C1d9991.429ENSG00000197223C1D9991.429Homo_sapiens
ENSRNOG00000005982C1d9963.830ENSAPOG00000005466c1d9563.830Acanthochromis_polyacanthus
ENSRNOG00000005982C1d9990.647ENSAMEG00000004859C1D9590.647Ailuropoda_melanoleuca
ENSRNOG00000005982C1d9465.909ENSACIG00000012684c1d8665.909Amphilophus_citrinellus
ENSRNOG00000005982C1d9364.394ENSAOCG00000020354c1d8764.062Amphiprion_ocellaris
ENSRNOG00000005982C1d9464.662ENSAPEG00000001403c1d8664.662Amphiprion_percula
ENSRNOG00000005982C1d9665.693ENSATEG00000012922c1d8865.693Anabas_testudineus
ENSRNOG00000005982C1d9477.037ENSAPLG00000009320C1D9377.037Anas_platyrhynchos
ENSRNOG00000005982C1d8782.787ENSACAG00000001337C1D10082.787Anolis_carolinensis
ENSRNOG00000005982C1d9992.857ENSANAG00000035972-9992.857Aotus_nancymaae
ENSRNOG00000005982C1d9990.000ENSANAG00000005773-9990.000Aotus_nancymaae
ENSRNOG00000005982C1d8766.393ENSACLG00000026206c1d8963.910Astatotilapia_calliptera
ENSRNOG00000005982C1d9962.937ENSAMXG00000043212c1d9862.937Astyanax_mexicanus
ENSRNOG00000005982C1d10090.071ENSBTAG00000049002C1D10090.071Bos_taurus
ENSRNOG00000005982C1d8282.759ENSCJAG00000044668-9182.759Callithrix_jacchus
ENSRNOG00000005982C1d9992.143ENSCJAG00000006589C1D9291.429Callithrix_jacchus
ENSRNOG00000005982C1d10089.362ENSCAFG00000030099C1D10089.362Canis_familiaris
ENSRNOG00000005982C1d10089.362ENSCAFG00020026997C1D10089.362Canis_lupus_dingo
ENSRNOG00000005982C1d10090.780ENSCHIG00000025729C1D10090.780Capra_hircus
ENSRNOG00000005982C1d10090.071ENSTSYG00000035739-10090.071Carlito_syrichta
ENSRNOG00000005982C1d9980.714ENSTSYG00000026573-8580.714Carlito_syrichta
ENSRNOG00000005982C1d10068.085ENSCAPG00000011523-10068.085Cavia_aperea
ENSRNOG00000005982C1d10068.794ENSCPOG00000020112-10068.794Cavia_porcellus
ENSRNOG00000005982C1d9988.571ENSCPOG00000037986-9988.571Cavia_porcellus
ENSRNOG00000005982C1d9992.143ENSCCAG00000030405-9992.143Cebus_capucinus
ENSRNOG00000005982C1d9991.429ENSCATG00000045336C1D9991.429Cercocebus_atys
ENSRNOG00000005982C1d9988.571ENSCATG00000043348-9988.571Cercocebus_atys
ENSRNOG00000005982C1d10089.362ENSCLAG00000011883C1D10089.362Chinchilla_lanigera
ENSRNOG00000005982C1d9991.429ENSCSAG00000014811C1D9991.429Chlorocebus_sabaeus
ENSRNOG00000005982C1d10090.071ENSCHOG00000006719C1D7990.071Choloepus_hoffmanni
ENSRNOG00000005982C1d9481.955ENSCPBG00000014451C1D9081.955Chrysemys_picta_bellii
ENSRNOG00000005982C1d8643.802ENSCING00000020906-6443.443Ciona_intestinalis
ENSRNOG00000005982C1d8347.009ENSCSAVG00000000150-6747.009Ciona_savignyi
ENSRNOG00000005982C1d9990.714ENSCANG00000035564C1D9990.714Colobus_angolensis_palliatus
ENSRNOG00000005982C1d8778.049ENSCANG00000036599-10078.049Colobus_angolensis_palliatus
ENSRNOG00000005982C1d10097.163ENSCGRG00001023376C1d10097.163Cricetulus_griseus_chok1gshd
ENSRNOG00000005982C1d10097.163ENSCGRG00000010245C1d10097.163Cricetulus_griseus_crigri
ENSRNOG00000005982C1d9261.538ENSCSEG00000000587c1d9161.538Cynoglossus_semilaevis
ENSRNOG00000005982C1d9363.359ENSCVAG00000004603c1d8763.359Cyprinodon_variegatus
ENSRNOG00000005982C1d8767.480ENSDARG00000021112c1d9661.972Danio_rerio
ENSRNOG00000005982C1d10081.560ENSDNOG00000046068-10081.560Dasypus_novemcinctus
ENSRNOG00000005982C1d10087.943ENSDORG00000003300C1d10087.943Dipodomys_ordii
ENSRNOG00000005982C1d6791.489ENSETEG00000014857C1D9991.489Echinops_telfairi
ENSRNOG00000005982C1d8359.829ENSEBUG00000006874c1d7459.829Eptatretus_burgeri
ENSRNOG00000005982C1d10090.071ENSEASG00005007307C1D9290.071Equus_asinus_asinus
ENSRNOG00000005982C1d9989.928ENSECAG00000002187C1D9990.580Equus_caballus
ENSRNOG00000005982C1d8968.254ENSELUG00000014823c1d8668.254Esox_lucius
ENSRNOG00000005982C1d10090.780ENSFCAG00000028933C1D10090.780Felis_catus
ENSRNOG00000005982C1d9381.203ENSFALG00000013640C1D8181.203Ficedula_albicollis
ENSRNOG00000005982C1d10088.652ENSFDAG00000010462-10088.652Fukomys_damarensis
ENSRNOG00000005982C1d10073.239ENSFDAG00000014175-10073.239Fukomys_damarensis
ENSRNOG00000005982C1d9665.441ENSFHEG00000010545c1d9266.165Fundulus_heteroclitus
ENSRNOG00000005982C1d8365.812ENSGMOG00000013911-9365.812Gadus_morhua
ENSRNOG00000005982C1d9677.698ENSGALG00000008765C1D9777.698Gallus_gallus
ENSRNOG00000005982C1d9265.385ENSGAFG00000012578c1d8365.385Gambusia_affinis
ENSRNOG00000005982C1d8964.000ENSGACG00000011981c1d9864.000Gasterosteus_aculeatus
ENSRNOG00000005982C1d8882.258ENSGAGG00000013383C1D9078.947Gopherus_agassizii
ENSRNOG00000005982C1d9985.000ENSGGOG00000025808-8085.000Gorilla_gorilla
ENSRNOG00000005982C1d9990.000ENSGGOG00000022296-9990.000Gorilla_gorilla
ENSRNOG00000005982C1d10091.489ENSGGOG00000025982-7891.489Gorilla_gorilla
ENSRNOG00000005982C1d8268.103ENSHBUG00000018531c1d7665.354Haplochromis_burtoni
ENSRNOG00000005982C1d9878.261ENSHGLG00000021219-9878.261Heterocephalus_glaber_female
ENSRNOG00000005982C1d9189.147ENSHGLG00000012332-9987.143Heterocephalus_glaber_female
ENSRNOG00000005982C1d10087.234ENSHGLG00100000221-10087.234Heterocephalus_glaber_male
ENSRNOG00000005982C1d9878.986ENSHGLG00100019951-9878.986Heterocephalus_glaber_male
ENSRNOG00000005982C1d9164.885ENSHCOG00000014568C1D8964.885Hippocampus_comes
ENSRNOG00000005982C1d9164.885ENSHCOG00000014589c1d8964.885Hippocampus_comes
ENSRNOG00000005982C1d9260.902ENSIPUG00000018661c1d9260.902Ictalurus_punctatus
ENSRNOG00000005982C1d10090.071ENSSTOG00000012346C1D10090.071Ictidomys_tridecemlineatus
ENSRNOG00000005982C1d9873.188ENSJJAG00000016086-10073.188Jaculus_jaculus
ENSRNOG00000005982C1d8980.000ENSJJAG00000023186-9980.000Jaculus_jaculus
ENSRNOG00000005982C1d9881.159ENSJJAG00000009540-10081.159Jaculus_jaculus
ENSRNOG00000005982C1d9879.710ENSJJAG00000005044-10079.710Jaculus_jaculus
ENSRNOG00000005982C1d9666.176ENSKMAG00000015077c1d8866.176Kryptolebias_marmoratus
ENSRNOG00000005982C1d10061.702ENSLBEG00000008351c1d9161.702Labrus_bergylta
ENSRNOG00000005982C1d8480.672ENSLACG00000007516C1D8080.672Latimeria_chalumnae
ENSRNOG00000005982C1d9964.583ENSLOCG00000016024c1d9864.583Lepisosteus_oculatus
ENSRNOG00000005982C1d10088.652ENSLAFG00000002083C1D10088.652Loxodonta_africana
ENSRNOG00000005982C1d9987.857ENSMFAG00000034034-9987.857Macaca_fascicularis
ENSRNOG00000005982C1d9990.000ENSMFAG00000028681-9990.000Macaca_fascicularis
ENSRNOG00000005982C1d9991.429ENSMFAG00000034261C1D9991.429Macaca_fascicularis
ENSRNOG00000005982C1d9987.143ENSMMUG00000043184-9987.143Macaca_mulatta
ENSRNOG00000005982C1d9989.286ENSMMUG00000017209-9989.286Macaca_mulatta
ENSRNOG00000005982C1d9891.304ENSMMUG00000041557C1D9991.304Macaca_mulatta
ENSRNOG00000005982C1d9991.429ENSMNEG00000040612C1D9991.429Macaca_nemestrina
ENSRNOG00000005982C1d9987.143ENSMNEG00000020626-9987.143Macaca_nemestrina
ENSRNOG00000005982C1d9991.429ENSMLEG00000027619C1D9991.429Mandrillus_leucophaeus
ENSRNOG00000005982C1d9988.571ENSMLEG00000028412-9988.571Mandrillus_leucophaeus
ENSRNOG00000005982C1d9164.844ENSMAMG00000022156c1d9063.309Mastacembelus_armatus
ENSRNOG00000005982C1d8268.103ENSMZEG00005027343c1d8765.354Maylandia_zebra
ENSRNOG00000005982C1d9975.000ENSMGAG00000004517C1D9975.000Meleagris_gallopavo
ENSRNOG00000005982C1d10096.454ENSMAUG00000008974C1d10096.454Mesocricetus_auratus
ENSRNOG00000005982C1d10089.362ENSMICG00000032141C1D10089.362Microcebus_murinus
ENSRNOG00000005982C1d10096.454ENSMOCG00000010860C1d10096.454Microtus_ochrogaster
ENSRNOG00000005982C1d9964.286ENSMMOG00000007332c1d8864.286Mola_mola
ENSRNOG00000005982C1d9980.142ENSMODG00000003561C1D9980.142Monodelphis_domestica
ENSRNOG00000005982C1d9464.394ENSMALG00000020864c1d10061.314Monopterus_albus
ENSRNOG00000005982C1d10097.163MGP_CAROLIEiJ_G0016110C1d10098.305Mus_caroli
ENSRNOG00000005982C1d10097.163ENSMUSG00000000581C1d10098.305Mus_musculus
ENSRNOG00000005982C1d10097.872MGP_PahariEiJ_G0016781C1d10099.153Mus_pahari
ENSRNOG00000005982C1d10097.163MGP_SPRETEiJ_G0016952C1d10098.305Mus_spretus
ENSRNOG00000005982C1d10091.489ENSMPUG00000006224C1D10091.489Mustela_putorius_furo
ENSRNOG00000005982C1d9987.143ENSMLUG00000029990-9987.143Myotis_lucifugus
ENSRNOG00000005982C1d9990.714ENSMLUG00000010791-9990.714Myotis_lucifugus
ENSRNOG00000005982C1d9988.571ENSMLUG00000024947-9988.571Myotis_lucifugus
ENSRNOG00000005982C1d10083.688ENSNGAG00000016675-10083.688Nannospalax_galili
ENSRNOG00000005982C1d10090.071ENSNGAG00000011872-10090.071Nannospalax_galili
ENSRNOG00000005982C1d8886.290ENSNGAG00000012482-9886.290Nannospalax_galili
ENSRNOG00000005982C1d8763.281ENSNBRG00000010704c1d8764.567Neolamprologus_brichardi
ENSRNOG00000005982C1d9990.000ENSNLEG00000032919-7890.000Nomascus_leucogenys
ENSRNOG00000005982C1d10087.234ENSOPRG00000009586C1D10087.234Ochotona_princeps
ENSRNOG00000005982C1d10077.305ENSODEG00000018525-10077.305Octodon_degus
ENSRNOG00000005982C1d9989.286ENSODEG00000011242-9989.286Octodon_degus
ENSRNOG00000005982C1d9889.130ENSODEG00000018885-9989.130Octodon_degus
ENSRNOG00000005982C1d8767.480ENSONIG00000001233c1d8964.925Oreochromis_niloticus
ENSRNOG00000005982C1d7885.455ENSOANG00000008385C1D9985.455Ornithorhynchus_anatinus
ENSRNOG00000005982C1d10088.652ENSOCUG00000009771-10088.652Oryctolagus_cuniculus
ENSRNOG00000005982C1d10088.652ENSOCUG00000025587-10088.652Oryctolagus_cuniculus
ENSRNOG00000005982C1d9466.667ENSORLG00000021968c1d8366.667Oryzias_latipes
ENSRNOG00000005982C1d9466.667ENSORLG00020000507c1d8466.667Oryzias_latipes_hni
ENSRNOG00000005982C1d8968.000ENSORLG00015004594c1d8068.000Oryzias_latipes_hsok
ENSRNOG00000005982C1d9466.667ENSOMEG00000004672c1d8566.667Oryzias_melastigma
ENSRNOG00000005982C1d10088.652ENSOGAG00000027934-10088.652Otolemur_garnettii
ENSRNOG00000005982C1d10090.780ENSOARG00000019931C1D9990.780Ovis_aries
ENSRNOG00000005982C1d9992.143ENSPPAG00000037847-9992.143Pan_paniscus
ENSRNOG00000005982C1d9985.714ENSPPAG00000040091-8085.714Pan_paniscus
ENSRNOG00000005982C1d10060.993ENSPPRG00000022830-10060.993Panthera_pardus
ENSRNOG00000005982C1d10090.071ENSPPRG00000017045-10090.071Panthera_pardus
ENSRNOG00000005982C1d10090.780ENSPTIG00000009414C1D10090.780Panthera_tigris_altaica
ENSRNOG00000005982C1d9992.143ENSPTRG00000023558C1D9992.143Pan_troglodytes
ENSRNOG00000005982C1d9987.857ENSPANG00000000501-9987.857Papio_anubis
ENSRNOG00000005982C1d9991.429ENSPANG00000002886C1D7891.429Papio_anubis
ENSRNOG00000005982C1d8965.873ENSPKIG00000004877c1d8565.873Paramormyrops_kingsleyae
ENSRNOG00000005982C1d9481.955ENSPSIG00000010015C1D9281.955Pelodiscus_sinensis
ENSRNOG00000005982C1d9164.341ENSPMGG00000009326c1d8563.636Periophthalmus_magnuspinnatus
ENSRNOG00000005982C1d9979.433ENSPCIG00000018629-9979.433Phascolarctos_cinereus
ENSRNOG00000005982C1d9974.286ENSPCIG00000006831-9774.286Phascolarctos_cinereus
ENSRNOG00000005982C1d9665.441ENSPFOG00000003686c1d8865.441Poecilia_formosa
ENSRNOG00000005982C1d9665.441ENSPLAG00000000228c1d9665.441Poecilia_latipinna
ENSRNOG00000005982C1d9665.441ENSPMEG00000023213c1d8865.441Poecilia_mexicana
ENSRNOG00000005982C1d9964.748ENSPREG00000000742c1d9864.748Poecilia_reticulata
ENSRNOG00000005982C1d9985.714ENSPPYG00000002294-9985.714Pongo_abelii
ENSRNOG00000005982C1d9992.143ENSPPYG00000012354C1D7792.143Pongo_abelii
ENSRNOG00000005982C1d10078.014ENSPCAG00000010088C1D7978.014Procavia_capensis
ENSRNOG00000005982C1d10089.362ENSPCOG00000016112C1D10089.362Propithecus_coquereli
ENSRNOG00000005982C1d10089.362ENSPVAG00000012692C1D7989.362Pteropus_vampyrus
ENSRNOG00000005982C1d8268.103ENSPNYG00000008789c1d8765.354Pundamilia_nyererei
ENSRNOG00000005982C1d8870.161ENSPNAG00000004219c1d8570.161Pygocentrus_nattereri
ENSRNOG00000005982C1d9987.143ENSRBIG00000026211-9987.143Rhinopithecus_bieti
ENSRNOG00000005982C1d9991.429ENSRROG00000029013C1D9991.429Rhinopithecus_roxellana
ENSRNOG00000005982C1d9987.143ENSRROG00000005944-9987.143Rhinopithecus_roxellana
ENSRNOG00000005982C1d9992.143ENSSBOG00000025275C1D9992.143Saimiri_boliviensis_boliviensis
ENSRNOG00000005982C1d9978.723ENSSHAG00000008352C1D6878.723Sarcophilus_harrisii
ENSRNOG00000005982C1d8868.800ENSSFOG00015010861c1d8968.800Scleropages_formosus
ENSRNOG00000005982C1d9959.712ENSSMAG00000019230c1d9059.712Scophthalmus_maximus
ENSRNOG00000005982C1d9465.909ENSSDUG00000020213c1d8565.909Seriola_dumerili
ENSRNOG00000005982C1d9963.309ENSSLDG00000017371c1d9063.309Seriola_lalandi_dorsalis
ENSRNOG00000005982C1d8879.839ENSSPUG00000006525C1D9275.556Sphenodon_punctatus
ENSRNOG00000005982C1d9267.692ENSSPAG00000008574c1d9065.468Stegastes_partitus
ENSRNOG00000005982C1d8570.833ENSSSCG00000035701-10070.833Sus_scrofa
ENSRNOG00000005982C1d10090.780ENSSSCG00000039331-10090.780Sus_scrofa
ENSRNOG00000005982C1d9579.412ENSTGUG00000002367C1D9479.412Taeniopygia_guttata
ENSRNOG00000005982C1d8766.667ENSTRUG00000012245c1d7466.667Takifugu_rubripes
ENSRNOG00000005982C1d9962.857ENSTNIG00000009827c1d9562.857Tetraodon_nigroviridis
ENSRNOG00000005982C1d10087.943ENSTBEG00000009797C1D10087.943Tupaia_belangeri
ENSRNOG00000005982C1d9990.000ENSTTRG00000013982C1D8090.000Tursiops_truncatus
ENSRNOG00000005982C1d10079.167ENSUAMG00000025246C1D10079.167Ursus_americanus
ENSRNOG00000005982C1d7269.231ENSUMAG00000006451-9168.421Ursus_maritimus
ENSRNOG00000005982C1d10090.780ENSUMAG00000021118-10090.780Ursus_maritimus
ENSRNOG00000005982C1d10089.362ENSVPAG00000012080C1D7989.362Vicugna_pacos
ENSRNOG00000005982C1d10088.652ENSVVUG00000027629C1D8888.652Vulpes_vulpes
ENSRNOG00000005982C1d9967.832ENSXETG00000025934c1d9967.832Xenopus_tropicalis
ENSRNOG00000005982C1d8967.200ENSXCOG00000013813c1d8864.706Xiphophorus_couchianus
ENSRNOG00000005982C1d8966.400ENSXMAG00000022273c1d8863.971Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000460maturation of 5.8S rRNA-IEAProcess
GO:0000460maturation of 5.8S rRNA-ISOProcess
GO:0003674molecular_function-NDFunction
GO:0003677DNA binding-IEAFunction
GO:0003677DNA binding-ISOFunction
GO:0003714transcription corepressor activity-IEAFunction
GO:0003714transcription corepressor activity-ISOFunction
GO:0003723RNA binding-IEAFunction
GO:0003723RNA binding-ISOFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-ISOComponent
GO:0005730nucleolus-IEAComponent
GO:0005730nucleolus-ISOComponent
GO:0008150biological_process-NDProcess
GO:0016922nuclear receptor binding-IEAFunction
GO:0016922nuclear receptor binding-ISOFunction
GO:0017053transcriptional repressor complex-IEAComponent
GO:0017053transcriptional repressor complex-ISOComponent
GO:0045892negative regulation of transcription, DNA-templated-IEAProcess
GO:0045892negative regulation of transcription, DNA-templated-ISOProcess

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