EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006180 (Gene tree)
Gene ID: 298874
Gene Symbol: Pum2
Alias: LOC298874
Full Name: pumilio RNA-binding family member 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 79491 bases
Position: chr6:33786197-33865687
Accession: 1311024
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	1	8
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	2	8
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	3	8
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	4	8
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	5	8
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	6	8
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	7	8
ENSRNOP00000074592	PUF	PF00806.19	2.3e-73	8	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	1	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	2	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	3	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	4	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	5	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	6	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	7	8
ENSRNOP00000008359	PUF	PF00806.19	4.4e-73	8	8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008359	-	6085	XM_006239879	ENSRNOP00000008359	1061 (aa)	XP_006239941	D3ZQL8
ENSRNOT00000082598	-	3299	XM_006239883	ENSRNOP00000074592	986 (aa)	XP_006239945	A0A0G2K8F9

Gene Model

Click here to download ENSRNOG00000006180's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006180's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000006180	Pum2	100	88.592	ENSRNOG00000011709	Pum1	86	87.059

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006180	Pum2	100	97.280	ENSG00000055917	PUM2	100	100.000	Homo_sapiens
ENSRNOG00000006180	Pum2	90	90.709	ENSAPOG00000015756	pum2	100	75.325	Acanthochromis_polyacanthus
ENSRNOG00000006180	Pum2	99	98.783	ENSAMEG00000002823	PUM2	100	97.103	Ailuropoda_melanoleuca
ENSRNOG00000006180	Pum2	90	85.031	ENSACIG00000010646	pum2	98	85.270	Amphilophus_citrinellus
ENSRNOG00000006180	Pum2	98	71.881	ENSAOCG00000016619	pum2	87	74.157	Amphiprion_ocellaris
ENSRNOG00000006180	Pum2	90	90.709	ENSAPEG00000019924	pum2	100	76.869	Amphiprion_percula
ENSRNOG00000006180	Pum2	100	73.985	ENSATEG00000015030	pum2	90	75.392	Anabas_testudineus
ENSRNOG00000006180	Pum2	100	91.471	ENSAPLG00000010496	PUM2	90	90.722	Anas_platyrhynchos
ENSRNOG00000006180	Pum2	100	90.722	ENSACAG00000010491	PUM2	100	90.066	Anolis_carolinensis
ENSRNOG00000006180	Pum2	100	97.670	ENSANAG00000021807	PUM2	100	97.670	Aotus_nancymaae
ENSRNOG00000006180	Pum2	100	73.941	ENSACLG00000022532	pum2	89	75.253	Astatotilapia_calliptera
ENSRNOG00000006180	Pum2	100	97.368	ENSBTAG00000011155	PUM2	100	97.368	Bos_taurus
ENSRNOG00000006180	Pum2	100	97.769	ENSCJAG00000007450	PUM2	100	97.769	Callithrix_jacchus
ENSRNOG00000006180	Pum2	100	97.282	ENSCAFG00000003839	PUM2	100	97.282	Canis_familiaris
ENSRNOG00000006180	Pum2	100	96.255	ENSCAFG00020025689	PUM2	100	96.255	Canis_lupus_dingo
ENSRNOG00000006180	Pum2	100	97.188	ENSCHIG00000022180	PUM2	100	97.188	Capra_hircus
ENSRNOG00000006180	Pum2	100	97.465	ENSTSYG00000014463	PUM2	100	97.465	Carlito_syrichta
ENSRNOG00000006180	Pum2	100	82.287	ENSCAPG00000016888	PUM2	99	94.255	Cavia_aperea
ENSRNOG00000006180	Pum2	99	98.778	ENSCPOG00000031996	PUM2	100	97.068	Cavia_porcellus
ENSRNOG00000006180	Pum2	100	97.467	ENSCCAG00000037035	PUM2	100	97.744	Cebus_capucinus
ENSRNOG00000006180	Pum2	100	99.267	ENSCATG00000043826	PUM2	100	97.637	Cercocebus_atys
ENSRNOG00000006180	Pum2	100	97.568	ENSCLAG00000006048	PUM2	100	97.568	Chinchilla_lanigera
ENSRNOG00000006180	Pum2	100	97.467	ENSCSAG00000008087	PUM2	100	97.467	Chlorocebus_sabaeus
ENSRNOG00000006180	Pum2	86	99.138	ENSCHOG00000004575	PUM2	86	99.138	Choloepus_hoffmanni
ENSRNOG00000006180	Pum2	100	91.599	ENSCPBG00000019966	PUM2	100	91.296	Chrysemys_picta_bellii
ENSRNOG00000006180	Pum2	100	97.373	ENSCANG00000032797	PUM2	100	97.530	Colobus_angolensis_palliatus
ENSRNOG00000006180	Pum2	100	98.783	ENSCGRG00001025023	Pum2	100	98.783	Cricetulus_griseus_chok1gshd
ENSRNOG00000006180	Pum2	100	98.783	ENSCGRG00000001580	Pum2	100	98.783	Cricetulus_griseus_crigri
ENSRNOG00000006180	Pum2	97	85.227	ENSCSEG00000020899	pum2	90	74.262	Cynoglossus_semilaevis
ENSRNOG00000006180	Pum2	100	73.155	ENSCVAG00000002426	pum2	100	74.152	Cyprinodon_variegatus
ENSRNOG00000006180	Pum2	100	74.288	ENSDARG00000061040	pum2	90	74.288	Danio_rerio
ENSRNOG00000006180	Pum2	98	94.507	ENSDNOG00000006733	PUM2	100	94.507	Dasypus_novemcinctus
ENSRNOG00000006180	Pum2	100	91.036	ENSDORG00000011453	Pum2	100	91.323	Dipodomys_ordii
ENSRNOG00000006180	Pum2	87	98.577	ENSETEG00000017683	PUM2	85	98.577	Echinops_telfairi
ENSRNOG00000006180	Pum2	68	73.995	ENSEBUG00000014828	pum2	93	60.199	Eptatretus_burgeri
ENSRNOG00000006180	Pum2	96	66.569	ENSEBUG00000004435	pum2	92	86.256	Eptatretus_burgeri
ENSRNOG00000006180	Pum2	100	97.571	ENSEASG00005009429	PUM2	100	97.571	Equus_asinus_asinus
ENSRNOG00000006180	Pum2	99	99.267	ENSECAG00000021930	PUM2	100	97.571	Equus_caballus
ENSRNOG00000006180	Pum2	82	91.429	ENSEEUG00000003224	-	80	91.827	Erinaceus_europaeus
ENSRNOG00000006180	Pum2	100	71.546	ENSELUG00000014997	pum2	90	73.285	Esox_lucius
ENSRNOG00000006180	Pum2	100	97.095	ENSFCAG00000027520	PUM2	100	97.210	Felis_catus
ENSRNOG00000006180	Pum2	100	92.221	ENSFALG00000001759	PUM2	100	91.471	Ficedula_albicollis
ENSRNOG00000006180	Pum2	99	98.533	ENSFDAG00000019685	PUM2	100	96.364	Fukomys_damarensis
ENSRNOG00000006180	Pum2	96	90.954	ENSFHEG00000021596	pum2	100	76.224	Fundulus_heteroclitus
ENSRNOG00000006180	Pum2	100	70.669	ENSGMOG00000006903	pum2	100	71.651	Gadus_morhua
ENSRNOG00000006180	Pum2	100	92.034	ENSGALG00000016481	PUM2	100	91.284	Gallus_gallus
ENSRNOG00000006180	Pum2	96	90.976	ENSGAFG00000013691	pum2	100	76.447	Gambusia_affinis
ENSRNOG00000006180	Pum2	100	72.946	ENSGACG00000009670	pum2	100	73.481	Gasterosteus_aculeatus
ENSRNOG00000006180	Pum2	100	91.659	ENSGAGG00000020698	PUM2	100	90.628	Gopherus_agassizii
ENSRNOG00000006180	Pum2	100	97.467	ENSGGOG00000011374	PUM2	100	97.637	Gorilla_gorilla
ENSRNOG00000006180	Pum2	95	86.076	ENSHBUG00000016453	pum2	90	69.972	Haplochromis_burtoni
ENSRNOG00000006180	Pum2	100	94.326	ENSHGLG00000007892	PUM2	100	94.428	Heterocephalus_glaber_female
ENSRNOG00000006180	Pum2	100	92.984	ENSHGLG00100015510	PUM2	100	92.797	Heterocephalus_glaber_male
ENSRNOG00000006180	Pum2	99	90.954	ENSHCOG00000010119	pum2	85	85.526	Hippocampus_comes
ENSRNOG00000006180	Pum2	100	98.075	ENSSTOG00000006262	PUM2	100	98.075	Ictidomys_tridecemlineatus
ENSRNOG00000006180	Pum2	100	97.194	ENSJJAG00000020969	Pum2	100	97.194	Jaculus_jaculus
ENSRNOG00000006180	Pum2	100	80.685	ENSKMAG00000017216	pum2	100	74.153	Kryptolebias_marmoratus
ENSRNOG00000006180	Pum2	96	90.511	ENSLBEG00000020488	pum2	87	85.153	Labrus_bergylta
ENSRNOG00000006180	Pum2	100	88.340	ENSLACG00000008723	PUM2	89	88.433	Latimeria_chalumnae
ENSRNOG00000006180	Pum2	100	85.019	ENSLOCG00000017196	pum2	83	93.647	Lepisosteus_oculatus
ENSRNOG00000006180	Pum2	100	96.636	ENSLAFG00000009278	PUM2	100	96.636	Loxodonta_africana
ENSRNOG00000006180	Pum2	100	97.373	ENSMFAG00000000492	PUM2	100	97.530	Macaca_fascicularis
ENSRNOG00000006180	Pum2	100	99.267	ENSMMUG00000023181	PUM2	100	97.670	Macaca_mulatta
ENSRNOG00000006180	Pum2	100	97.670	ENSMNEG00000039659	PUM2	100	97.670	Macaca_nemestrina
ENSRNOG00000006180	Pum2	100	97.467	ENSMLEG00000039243	PUM2	100	97.637	Mandrillus_leucophaeus
ENSRNOG00000006180	Pum2	100	74.376	ENSMAMG00000006121	pum2	90	75.416	Mastacembelus_armatus
ENSRNOG00000006180	Pum2	100	74.077	ENSMZEG00005000791	pum2	89	75.392	Maylandia_zebra
ENSRNOG00000006180	Pum2	100	92.034	ENSMGAG00000014040	PUM2	100	91.284	Meleagris_gallopavo
ENSRNOG00000006180	Pum2	100	98.126	ENSMAUG00000000311	Pum2	100	98.126	Mesocricetus_auratus
ENSRNOG00000006180	Pum2	100	97.936	ENSMICG00000011647	PUM2	100	98.281	Microcebus_murinus
ENSRNOG00000006180	Pum2	100	98.126	ENSMOCG00000013663	Pum2	100	98.126	Microtus_ochrogaster
ENSRNOG00000006180	Pum2	100	73.297	ENSMMOG00000002975	pum2	100	73.965	Mola_mola
ENSRNOG00000006180	Pum2	100	89.674	ENSMODG00000009811	PUM2	100	89.860	Monodelphis_domestica
ENSRNOG00000006180	Pum2	91	90.465	ENSMALG00000022313	pum2	100	74.600	Monopterus_albus
ENSRNOG00000006180	Pum2	100	98.987	MGP_CAROLIEiJ_G0017603	Pum2	100	98.987	Mus_caroli
ENSRNOG00000006180	Pum2	100	99.088	ENSMUSG00000020594	Pum2	100	99.088	Mus_musculus
ENSRNOG00000006180	Pum2	100	99.594	MGP_PahariEiJ_G0029361	Pum2	100	99.594	Mus_pahari
ENSRNOG00000006180	Pum2	100	99.088	MGP_SPRETEiJ_G0018447	Pum2	100	99.088	Mus_spretus
ENSRNOG00000006180	Pum2	100	97.470	ENSMPUG00000013734	PUM2	100	97.470	Mustela_putorius_furo
ENSRNOG00000006180	Pum2	100	96.723	ENSMLUG00000007362	PUM2	100	96.723	Myotis_lucifugus
ENSRNOG00000006180	Pum2	99	65.331	ENSNGAG00000016239	-	75	73.414	Nannospalax_galili
ENSRNOG00000006180	Pum2	100	97.097	ENSNGAG00000016665	-	100	97.097	Nannospalax_galili
ENSRNOG00000006180	Pum2	100	66.504	ENSNBRG00000020737	pum2	100	66.633	Neolamprologus_brichardi
ENSRNOG00000006180	Pum2	100	97.467	ENSNLEG00000002509	PUM2	100	97.637	Nomascus_leucogenys
ENSRNOG00000006180	Pum2	93	90.529	ENSMEUG00000016567	PUM2	93	89.577	Notamacropus_eugenii
ENSRNOG00000006180	Pum2	82	76.678	ENSOPRG00000001963	PUM2	88	90.789	Ochotona_princeps
ENSRNOG00000006180	Pum2	100	96.859	ENSODEG00000007823	PUM2	100	96.859	Octodon_degus
ENSRNOG00000006180	Pum2	100	74.170	ENSONIG00000006119	pum2	90	75.484	Oreochromis_niloticus
ENSRNOG00000006180	Pum2	100	97.749	ENSOCUG00000017908	PUM2	100	97.749	Oryctolagus_cuniculus
ENSRNOG00000006180	Pum2	91	90.441	ENSORLG00000012611	pum2	100	75.250	Oryzias_latipes
ENSRNOG00000006180	Pum2	100	90.441	ENSORLG00020014452	pum2	100	75.150	Oryzias_latipes_hni
ENSRNOG00000006180	Pum2	100	73.272	ENSORLG00015009427	pum2	90	74.286	Oryzias_latipes_hsok
ENSRNOG00000006180	Pum2	95	83.686	ENSOMEG00000005889	pum2	100	75.159	Oryzias_melastigma
ENSRNOG00000006180	Pum2	98	97.778	ENSOGAG00000002187	PUM2	100	97.778	Otolemur_garnettii
ENSRNOG00000006180	Pum2	100	97.007	ENSOARG00000017236	PUM2	100	97.007	Ovis_aries
ENSRNOG00000006180	Pum2	100	97.467	ENSPPAG00000023095	PUM2	100	97.637	Pan_paniscus
ENSRNOG00000006180	Pum2	100	97.095	ENSPPRG00000021443	PUM2	100	97.210	Panthera_pardus
ENSRNOG00000006180	Pum2	100	97.095	ENSPTIG00000018982	PUM2	100	97.210	Panthera_tigris_altaica
ENSRNOG00000006180	Pum2	100	97.467	ENSPTRG00000011692	PUM2	100	97.637	Pan_troglodytes
ENSRNOG00000006180	Pum2	100	85.348	ENSPANG00000009393	PUM2	100	100.000	Papio_anubis
ENSRNOG00000006180	Pum2	100	74.347	ENSPKIG00000023195	pum2	100	75.932	Paramormyrops_kingsleyae
ENSRNOG00000006180	Pum2	100	91.565	ENSPSIG00000011626	PUM2	88	90.815	Pelodiscus_sinensis
ENSRNOG00000006180	Pum2	100	74.274	ENSPMGG00000016123	pum2	100	75.400	Periophthalmus_magnuspinnatus
ENSRNOG00000006180	Pum2	100	97.751	ENSPEMG00000008357	Pum2	100	97.751	Peromyscus_maniculatus_bairdii
ENSRNOG00000006180	Pum2	100	67.864	ENSPMAG00000007038	pum2	95	79.867	Petromyzon_marinus
ENSRNOG00000006180	Pum2	100	89.849	ENSPCIG00000022139	PUM2	100	90.050	Phascolarctos_cinereus
ENSRNOG00000006180	Pum2	100	71.776	ENSPFOG00000019208	pum2	90	73.490	Poecilia_formosa
ENSRNOG00000006180	Pum2	96	90.976	ENSPLAG00000001826	pum2	100	76.547	Poecilia_latipinna
ENSRNOG00000006180	Pum2	100	73.364	ENSPMEG00000015766	pum2	90	75.115	Poecilia_mexicana
ENSRNOG00000006180	Pum2	100	75.075	ENSPREG00000006905	pum2	100	76.471	Poecilia_reticulata
ENSRNOG00000006180	Pum2	100	97.655	ENSPPYG00000012617	PUM2	100	97.655	Pongo_abelii
ENSRNOG00000006180	Pum2	76	100.000	ENSPCAG00000008001	PUM2	70	100.000	Procavia_capensis
ENSRNOG00000006180	Pum2	99	98.356	ENSPCOG00000019636	PUM2	100	98.356	Propithecus_coquereli
ENSRNOG00000006180	Pum2	98	91.350	ENSPVAG00000002920	PUM2	98	94.346	Pteropus_vampyrus
ENSRNOG00000006180	Pum2	100	73.941	ENSPNYG00000022901	pum2	89	75.253	Pundamilia_nyererei
ENSRNOG00000006180	Pum2	98	74.163	ENSPNAG00000008025	pum2	100	74.768	Pygocentrus_nattereri
ENSRNOG00000006180	Pum2	100	97.670	ENSRBIG00000044880	PUM2	100	97.670	Rhinopithecus_bieti
ENSRNOG00000006180	Pum2	100	97.376	ENSSBOG00000022007	PUM2	100	97.639	Saimiri_boliviensis_boliviensis
ENSRNOG00000006180	Pum2	100	88.018	ENSSHAG00000002778	PUM2	100	88.479	Sarcophilus_harrisii
ENSRNOG00000006180	Pum2	86	92.944	ENSSFOG00015003476	pum2	84	87.202	Scleropages_formosus
ENSRNOG00000006180	Pum2	100	72.702	ENSSMAG00000018236	pum2	100	66.024	Scophthalmus_maximus
ENSRNOG00000006180	Pum2	89	73.608	ENSSDUG00000001800	pum2	87	75.489	Seriola_dumerili
ENSRNOG00000006180	Pum2	100	73.413	ENSSLDG00000000981	pum2	90	75.529	Seriola_lalandi_dorsalis
ENSRNOG00000006180	Pum2	96	87.600	ENSSARG00000010992	PUM2	86	88.623	Sorex_araneus
ENSRNOG00000006180	Pum2	99	91.864	ENSSPUG00000017012	PUM2	99	90.350	Sphenodon_punctatus
ENSRNOG00000006180	Pum2	90	90.709	ENSSPAG00000022948	pum2	100	76.570	Stegastes_partitus
ENSRNOG00000006180	Pum2	99	99.272	ENSSSCG00000008600	PUM2	100	97.467	Sus_scrofa
ENSRNOG00000006180	Pum2	100	92.221	ENSTGUG00000013149	PUM2	100	91.471	Taeniopygia_guttata
ENSRNOG00000006180	Pum2	100	71.667	ENSTRUG00000018167	pum2	90	72.509	Takifugu_rubripes
ENSRNOG00000006180	Pum2	100	73.272	ENSTNIG00000003116	pum2	90	74.470	Tetraodon_nigroviridis
ENSRNOG00000006180	Pum2	85	97.561	ENSTBEG00000008729	PUM2	86	97.561	Tupaia_belangeri
ENSRNOG00000006180	Pum2	100	96.445	ENSTTRG00000004887	PUM2	100	96.445	Tursiops_truncatus
ENSRNOG00000006180	Pum2	72	96.774	ENSUAMG00000008120	PUM2	98	97.406	Ursus_americanus
ENSRNOG00000006180	Pum2	100	97.773	ENSUMAG00000023198	PUM2	100	97.773	Ursus_maritimus
ENSRNOG00000006180	Pum2	100	97.097	ENSVPAG00000005056	PUM2	100	97.097	Vicugna_pacos
ENSRNOG00000006180	Pum2	99	99.267	ENSVVUG00000014829	PUM2	100	97.672	Vulpes_vulpes
ENSRNOG00000006180	Pum2	100	79.609	ENSXETG00000008903	pum2	90	79.330	Xenopus_tropicalis
ENSRNOG00000006180	Pum2	89	73.375	ENSXCOG00000002556	pum2	87	75.335	Xiphophorus_couchianus
ENSRNOG00000006180	Pum2	96	90.976	ENSXMAG00000017682	pum2	100	76.647	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0010494	cytoplasmic stress granule	-	IEA	Component
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0010608	posttranscriptional regulation of gene expression	-	ISO	Process
GO:0031965	nuclear membrane	-	IEA	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0034063	stress granule assembly	-	IEA	Process
GO:0034063	stress granule assembly	-	ISO	Process
GO:0035196	production of miRNAs involved in gene silencing by miRNA	-	IEA	Process
GO:0035196	production of miRNAs involved in gene silencing by miRNA	-	ISO	Process
GO:0035198	miRNA binding	-	IEA	Function
GO:0035198	miRNA binding	-	ISO	Function
GO:0043488	regulation of mRNA stability	-	IEA	Process
GO:0043488	regulation of mRNA stability	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051983	regulation of chromosome segregation	-	IEA	Process
GO:0051983	regulation of chromosome segregation	-	ISO	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	IEA	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	ISO	Process
GO:2000637	positive regulation of gene silencing by miRNA	-	IEA	Process
GO:2000637	positive regulation of gene silencing by miRNA	-	ISO	Process