EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006380 (Gene tree)
Gene ID: 362264
Gene Symbol: Srsf6
Alias: LOC362264|Sfrs6
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 5324 bases
Position: chr3:159305345-159310668
Accession: 1359241
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008427	RRM_1	PF00076.22	4.6e-32	1	2
ENSRNOP00000008427	RRM_1	PF00076.22	4.6e-32	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008427	-	3513	-	ENSRNOP00000008427	339 (aa)	-	G3V6S8

Gene Model

Click here to download ENSRNOG00000006380's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG
rno05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006380's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000006380	Srsf6	53	65.363	ENSRNOG00000005513	Srsf5	66	64.286
ENSRNOG00000006380	Srsf6	58	40.670	ENSRNOG00000050323	Srsf1	78	41.627
ENSRNOG00000006380	Srsf6	50	42.857	ENSRNOG00000001163	Srsf9	71	39.011

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006380	Srsf6	100	96.221	ENSG00000124193	SRSF6	100	96.221	Homo_sapiens
ENSRNOG00000006380	Srsf6	95	85.231	ENSAMEG00000003710	SRSF6	94	84.877	Ailuropoda_melanoleuca
ENSRNOG00000006380	Srsf6	70	71.901	ENSACIG00000020091	-	95	80.315	Amphilophus_citrinellus
ENSRNOG00000006380	Srsf6	87	68.581	ENSACIG00000023658	-	56	87.778	Amphilophus_citrinellus
ENSRNOG00000006380	Srsf6	54	85.246	ENSAOCG00000004309	-	57	83.152	Amphiprion_ocellaris
ENSRNOG00000006380	Srsf6	54	88.649	ENSAPEG00000013086	-	53	88.172	Amphiprion_percula
ENSRNOG00000006380	Srsf6	67	71.179	ENSAPEG00000020746	-	66	79.787	Amphiprion_percula
ENSRNOG00000006380	Srsf6	54	82.967	ENSATEG00000007255	-	54	80.978	Anabas_testudineus
ENSRNOG00000006380	Srsf6	100	82.029	ENSACAG00000002061	SRSF6	98	83.188	Anolis_carolinensis
ENSRNOG00000006380	Srsf6	95	96.594	ENSANAG00000024080	SRSF6	94	96.894	Aotus_nancymaae
ENSRNOG00000006380	Srsf6	54	83.333	ENSAMXG00000042692	-	96	78.519	Astyanax_mexicanus
ENSRNOG00000006380	Srsf6	54	86.559	ENSAMXG00000003101	-	51	84.737	Astyanax_mexicanus
ENSRNOG00000006380	Srsf6	94	96.894	ENSBTAG00000008527	SRSF6	94	96.914	Bos_taurus
ENSRNOG00000006380	Srsf6	79	98.881	ENSCJAG00000048403	SRSF6	99	98.881	Callithrix_jacchus
ENSRNOG00000006380	Srsf6	95	96.605	ENSCAFG00000009289	SRSF6	94	96.285	Canis_familiaris
ENSRNOG00000006380	Srsf6	95	96.605	ENSCAFG00020013559	SRSF6	94	96.285	Canis_lupus_dingo
ENSRNOG00000006380	Srsf6	95	96.296	ENSCHIG00000009148	-	94	96.296	Capra_hircus
ENSRNOG00000006380	Srsf6	99	96.471	ENSCHIG00000015890	-	99	96.471	Capra_hircus
ENSRNOG00000006380	Srsf6	94	80.435	ENSTSYG00000026476	SRSF6	93	78.086	Carlito_syrichta
ENSRNOG00000006380	Srsf6	95	79.321	ENSCPOG00000011761	SRSF6	58	97.436	Cavia_porcellus
ENSRNOG00000006380	Srsf6	95	96.904	ENSCCAG00000026018	-	94	97.205	Cebus_capucinus
ENSRNOG00000006380	Srsf6	95	66.967	ENSCCAG00000018540	-	62	87.234	Cebus_capucinus
ENSRNOG00000006380	Srsf6	99	97.041	ENSCATG00000030794	SRSF6	99	97.041	Cercocebus_atys
ENSRNOG00000006380	Srsf6	100	95.918	ENSCLAG00000010247	SRSF6	100	95.918	Chinchilla_lanigera
ENSRNOG00000006380	Srsf6	99	97.041	ENSCSAG00000014022	SRSF6	99	97.041	Chlorocebus_sabaeus
ENSRNOG00000006380	Srsf6	79	97.222	ENSCHOG00000000561	SRSF6	77	97.222	Choloepus_hoffmanni
ENSRNOG00000006380	Srsf6	55	91.489	ENSCPBG00000018200	SRSF6	94	84.404	Chrysemys_picta_bellii
ENSRNOG00000006380	Srsf6	99	96.746	ENSCANG00000037774	-	99	96.746	Colobus_angolensis_palliatus
ENSRNOG00000006380	Srsf6	99	82.544	ENSCANG00000042529	-	98	82.544	Colobus_angolensis_palliatus
ENSRNOG00000006380	Srsf6	100	99.410	ENSCGRG00001022339	Srsf6	100	99.410	Cricetulus_griseus_chok1gshd
ENSRNOG00000006380	Srsf6	62	99.048	ENSCGRG00000006618	Srsf6	100	99.048	Cricetulus_griseus_crigri
ENSRNOG00000006380	Srsf6	54	83.957	ENSDARG00000016783	srsf6b	82	91.026	Danio_rerio
ENSRNOG00000006380	Srsf6	95	95.679	ENSDNOG00000008410	SRSF6	94	95.679	Dasypus_novemcinctus
ENSRNOG00000006380	Srsf6	100	96.512	ENSDORG00000028378	Srsf6	100	96.512	Dipodomys_ordii
ENSRNOG00000006380	Srsf6	94	91.875	ENSETEG00000006221	SRSF6	94	89.506	Echinops_telfairi
ENSRNOG00000006380	Srsf6	95	95.062	ENSEASG00005023429	SRSF6	94	95.988	Equus_asinus_asinus
ENSRNOG00000006380	Srsf6	95	95.062	ENSECAG00000023932	SRSF6	94	95.988	Equus_caballus
ENSRNOG00000006380	Srsf6	57	92.821	ENSEEUG00000002324	SRSF6	90	93.401	Erinaceus_europaeus
ENSRNOG00000006380	Srsf6	54	86.022	ENSELUG00000024182	SRSF6	90	78.049	Esox_lucius
ENSRNOG00000006380	Srsf6	53	84.530	ENSELUG00000013506	SRSF6	70	88.462	Esox_lucius
ENSRNOG00000006380	Srsf6	95	96.605	ENSFCAG00000032814	SRSF6	94	96.285	Felis_catus
ENSRNOG00000006380	Srsf6	95	80.556	ENSFDAG00000012191	SRSF6	93	78.086	Fukomys_damarensis
ENSRNOG00000006380	Srsf6	88	71.287	ENSFHEG00000023065	srsf6a	55	87.500	Fundulus_heteroclitus
ENSRNOG00000006380	Srsf6	53	82.320	ENSGMOG00000014458	srsf6a	52	77.604	Gadus_morhua
ENSRNOG00000006380	Srsf6	53	72.067	ENSGMOG00000006105	srsf6a	62	70.391	Gadus_morhua
ENSRNOG00000006380	Srsf6	94	81.288	ENSGALG00000000990	SRSF6	94	82.727	Gallus_gallus
ENSRNOG00000006380	Srsf6	88	58.929	ENSGACG00000006084	srsf6a	53	83.871	Gasterosteus_aculeatus
ENSRNOG00000006380	Srsf6	55	91.489	ENSGAGG00000003238	SRSF6	94	84.404	Gopherus_agassizii
ENSRNOG00000006380	Srsf6	100	96.221	ENSGGOG00000009808	SRSF6	100	96.221	Gorilla_gorilla
ENSRNOG00000006380	Srsf6	100	59.538	ENSHBUG00000006386	-	58	83.696	Haplochromis_burtoni
ENSRNOG00000006380	Srsf6	91	75.728	ENSHGLG00000007701	-	58	78.610	Heterocephalus_glaber_female
ENSRNOG00000006380	Srsf6	100	95.918	ENSHGLG00000007348	SRSF6	100	95.918	Heterocephalus_glaber_female
ENSRNOG00000006380	Srsf6	95	80.864	ENSHGLG00100005043	SRSF6	93	78.395	Heterocephalus_glaber_male
ENSRNOG00000006380	Srsf6	54	82.514	ENSHCOG00000002740	srsf6a	57	82.065	Hippocampus_comes
ENSRNOG00000006380	Srsf6	54	86.957	ENSIPUG00000004776	-	72	72.103	Ictalurus_punctatus
ENSRNOG00000006380	Srsf6	100	96.491	ENSSTOG00000010866	SRSF6	100	96.491	Ictidomys_tridecemlineatus
ENSRNOG00000006380	Srsf6	56	96.335	ENSJJAG00000020690	Srsf6	91	96.373	Jaculus_jaculus
ENSRNOG00000006380	Srsf6	54	84.783	ENSLBEG00000007356	srsf6a	52	85.484	Labrus_bergylta
ENSRNOG00000006380	Srsf6	100	78.409	ENSLACG00000005466	SRSF6	100	74.269	Latimeria_chalumnae
ENSRNOG00000006380	Srsf6	70	93.724	ENSLAFG00000006682	SRSF6	89	93.886	Loxodonta_africana
ENSRNOG00000006380	Srsf6	99	97.041	ENSMFAG00000036925	SRSF6	99	97.041	Macaca_fascicularis
ENSRNOG00000006380	Srsf6	99	97.041	ENSMMUG00000006742	SRSF6	99	97.041	Macaca_mulatta
ENSRNOG00000006380	Srsf6	94	96.250	ENSMNEG00000038270	-	94	96.273	Macaca_nemestrina
ENSRNOG00000006380	Srsf6	99	96.450	ENSMNEG00000027392	-	99	96.450	Macaca_nemestrina
ENSRNOG00000006380	Srsf6	57	96.891	ENSMLEG00000031524	SRSF6	90	96.891	Mandrillus_leucophaeus
ENSRNOG00000006380	Srsf6	54	88.108	ENSMAMG00000017161	srsf6a	53	87.634	Mastacembelus_armatus
ENSRNOG00000006380	Srsf6	63	71.861	ENSMZEG00005008032	-	57	83.696	Maylandia_zebra
ENSRNOG00000006380	Srsf6	95	95.077	ENSMICG00000008537	SRSF6	94	95.046	Microcebus_murinus
ENSRNOG00000006380	Srsf6	62	99.048	ENSMOCG00000018738	Srsf6	100	99.048	Microtus_ochrogaster
ENSRNOG00000006380	Srsf6	55	94.624	ENSMODG00000003107	SRSF6	95	86.997	Monodelphis_domestica
ENSRNOG00000006380	Srsf6	100	99.705	MGP_CAROLIEiJ_G0024606	Srsf6	100	99.705	Mus_caroli
ENSRNOG00000006380	Srsf6	100	100.000	ENSMUSG00000016921	Srsf6	100	100.000	Mus_musculus
ENSRNOG00000006380	Srsf6	100	99.705	MGP_PahariEiJ_G0026050	Srsf6	100	99.705	Mus_pahari
ENSRNOG00000006380	Srsf6	100	100.000	MGP_SPRETEiJ_G0025528	Srsf6	100	100.000	Mus_spretus
ENSRNOG00000006380	Srsf6	84	96.516	ENSMPUG00000017692	SRSF6	99	96.516	Mustela_putorius_furo
ENSRNOG00000006380	Srsf6	94	80.435	ENSMLUG00000016618	SRSF6	94	80.556	Myotis_lucifugus
ENSRNOG00000006380	Srsf6	100	96.460	ENSNGAG00000017560	Srsf6	100	96.460	Nannospalax_galili
ENSRNOG00000006380	Srsf6	53	88.525	ENSNBRG00000001846	-	52	87.634	Neolamprologus_brichardi
ENSRNOG00000006380	Srsf6	100	96.221	ENSNLEG00000006524	SRSF6	100	96.221	Nomascus_leucogenys
ENSRNOG00000006380	Srsf6	55	94.624	ENSMEUG00000014615	SRSF6	62	95.745	Notamacropus_eugenii
ENSRNOG00000006380	Srsf6	70	94.979	ENSOPRG00000002017	-	89	95.197	Ochotona_princeps
ENSRNOG00000006380	Srsf6	53	85.792	ENSONIG00000001925	-	66	72.766	Oreochromis_niloticus
ENSRNOG00000006380	Srsf6	54	84.153	ENSONIG00000020247	-	53	84.239	Oreochromis_niloticus
ENSRNOG00000006380	Srsf6	75	57.874	ENSOCUG00000023999	-	70	63.128	Oryctolagus_cuniculus
ENSRNOG00000006380	Srsf6	55	71.220	ENSOCUG00000009785	-	64	76.804	Oryctolagus_cuniculus
ENSRNOG00000006380	Srsf6	95	95.077	ENSOGAG00000014468	SRSF6	94	95.370	Otolemur_garnettii
ENSRNOG00000006380	Srsf6	94	93.168	ENSOARG00000003117	SRSF6	94	93.210	Ovis_aries
ENSRNOG00000006380	Srsf6	91	84.466	ENSPPAG00000043131	-	100	86.731	Pan_paniscus
ENSRNOG00000006380	Srsf6	100	95.930	ENSPPAG00000034327	-	100	95.930	Pan_paniscus
ENSRNOG00000006380	Srsf6	95	96.605	ENSPPRG00000008917	SRSF6	94	96.285	Panthera_pardus
ENSRNOG00000006380	Srsf6	57	95.385	ENSPTIG00000019153	SRSF6	90	94.845	Panthera_tigris_altaica
ENSRNOG00000006380	Srsf6	100	95.930	ENSPTRG00000044686	-	100	95.930	Pan_troglodytes
ENSRNOG00000006380	Srsf6	91	84.466	ENSPTRG00000046274	-	100	86.731	Pan_troglodytes
ENSRNOG00000006380	Srsf6	99	97.041	ENSPANG00000035224	SRSF6	99	97.041	Papio_anubis
ENSRNOG00000006380	Srsf6	91	68.889	ENSPKIG00000018463	-	77	92.308	Paramormyrops_kingsleyae
ENSRNOG00000006380	Srsf6	53	74.586	ENSPKIG00000015703	-	95	60.403	Paramormyrops_kingsleyae
ENSRNOG00000006380	Srsf6	90	72.078	ENSPMGG00000014963	srsf6a	55	89.130	Periophthalmus_magnuspinnatus
ENSRNOG00000006380	Srsf6	55	94.624	ENSPCIG00000003820	SRSF6	95	86.687	Phascolarctos_cinereus
ENSRNOG00000006380	Srsf6	60	85.246	ENSPFOG00000006437	srsf6a	50	83.158	Poecilia_formosa
ENSRNOG00000006380	Srsf6	54	83.871	ENSPLAG00000009243	srsf6a	80	82.677	Poecilia_latipinna
ENSRNOG00000006380	Srsf6	54	85.326	ENSPMEG00000006042	SRSF6	54	87.027	Poecilia_mexicana
ENSRNOG00000006380	Srsf6	100	96.221	ENSPPYG00000011019	SRSF6	100	96.221	Pongo_abelii
ENSRNOG00000006380	Srsf6	55	97.297	ENSPCAG00000010954	SRSF6	96	91.615	Procavia_capensis
ENSRNOG00000006380	Srsf6	95	95.385	ENSPCOG00000026364	SRSF6	94	95.356	Propithecus_coquereli
ENSRNOG00000006380	Srsf6	95	95.031	ENSPVAG00000015232	SRSF6	94	95.031	Pteropus_vampyrus
ENSRNOG00000006380	Srsf6	53	88.525	ENSPNYG00000011272	-	51	87.634	Pundamilia_nyererei
ENSRNOG00000006380	Srsf6	94	94.688	ENSRBIG00000041414	SRSF6	94	93.478	Rhinopithecus_bieti
ENSRNOG00000006380	Srsf6	99	97.041	ENSRROG00000029989	SRSF6	99	97.041	Rhinopithecus_roxellana
ENSRNOG00000006380	Srsf6	94	70.219	ENSSBOG00000034078	-	54	76.796	Saimiri_boliviensis_boliviensis
ENSRNOG00000006380	Srsf6	95	96.594	ENSSBOG00000033708	-	94	96.894	Saimiri_boliviensis_boliviensis
ENSRNOG00000006380	Srsf6	55	94.624	ENSSHAG00000012805	SRSF6	95	86.997	Sarcophilus_harrisii
ENSRNOG00000006380	Srsf6	54	80.220	ENSSMAG00000017447	-	55	79.891	Scophthalmus_maximus
ENSRNOG00000006380	Srsf6	54	88.108	ENSSDUG00000016097	srsf6a	53	87.634	Seriola_dumerili
ENSRNOG00000006380	Srsf6	54	88.108	ENSSLDG00000022841	srsf6a	54	87.634	Seriola_lalandi_dorsalis
ENSRNOG00000006380	Srsf6	54	93.989	ENSSPUG00000004967	SRSF6	94	86.335	Sphenodon_punctatus
ENSRNOG00000006380	Srsf6	76	70.566	ENSSPAG00000002362	srsf6a	67	86.243	Stegastes_partitus
ENSRNOG00000006380	Srsf6	99	96.176	ENSSSCG00000007362	SRSF6	99	96.176	Sus_scrofa
ENSRNOG00000006380	Srsf6	94	83.282	ENSTGUG00000003455	SRSF6	94	84.098	Taeniopygia_guttata
ENSRNOG00000006380	Srsf6	88	71.096	ENSTNIG00000001692	srsf6a	57	86.022	Tetraodon_nigroviridis
ENSRNOG00000006380	Srsf6	86	92.069	ENSTBEG00000013448	SRSF6	92	92.388	Tupaia_belangeri
ENSRNOG00000006380	Srsf6	69	95.745	ENSTTRG00000015410	SRSF6	88	95.633	Tursiops_truncatus
ENSRNOG00000006380	Srsf6	95	96.605	ENSUAMG00000003559	SRSF6	94	96.285	Ursus_americanus
ENSRNOG00000006380	Srsf6	57	95.385	ENSUMAG00000001154	SRSF6	90	94.845	Ursus_maritimus
ENSRNOG00000006380	Srsf6	76	100.000	ENSVPAG00000003016	SRSF6	74	100.000	Vicugna_pacos
ENSRNOG00000006380	Srsf6	54	86.885	ENSXMAG00000021849	srsf6a	55	86.413	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000380	alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000380	alternative mRNA splicing, via spliceosome	-	ISO	Process
GO:0000380	alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISO	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	23233666.	IDA	Component
GO:0006376	mRNA splice site selection	21873635.	IBA	Process
GO:0006376	mRNA splice site selection	-	ISO	Process
GO:0006376	mRNA splice site selection	-	ISS	Process
GO:0010629	negative regulation of gene expression	23737756.	IMP	Process
GO:0010837	regulation of keratinocyte proliferation	-	ISO	Process
GO:0010837	regulation of keratinocyte proliferation	-	ISS	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016607	nuclear speck	-	ISS	Component
GO:0032868	response to insulin	11283022.	IEP	Process
GO:0036002	pre-mRNA binding	21873635.	IBA	Function
GO:0036002	pre-mRNA binding	-	ISO	Function
GO:0036002	pre-mRNA binding	-	ISS	Function
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0045617	negative regulation of keratinocyte differentiation	-	ISO	Process
GO:0045617	negative regulation of keratinocyte differentiation	-	ISS	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	IEA	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0060501	positive regulation of epithelial cell proliferation involved in lung morphogenesis	-	IEA	Process
GO:0060501	positive regulation of epithelial cell proliferation involved in lung morphogenesis	-	ISO	Process
GO:0060548	negative regulation of cell death	-	ISO	Process
GO:0061041	regulation of wound healing	-	ISO	Process
GO:0061041	regulation of wound healing	-	ISS	Process
GO:2000675	negative regulation of type B pancreatic cell apoptotic process	23737756.	IMP	Process