EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000006384 (Gene tree)
Gene ID
297989
Gene Symbol
Ddx58
Alias
LOC297989
Full Name
DEXD/H-box helicase 58
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
36039 bases
Position
chr5:56500734-56536772
Accession
1309460
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000057492ResIIIPF04851.151.2e-1611
ENSRNOP00000057492DEADPF00270.292.4e-1611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000060765-1794-ENSRNOP00000057492598 (aa)-D4ADT5
Gene Model
Click here to download ENSRNOG00000006384's gene model file
Pathways
Pathway IDPathway NameSource
rno04064NF-kappa B signaling pathwayKEGG
rno04622RIG-I-like receptor signaling pathwayKEGG
rno04623Cytosolic DNA-sensing pathwayKEGG
rno05160Hepatitis CKEGG
rno05161Hepatitis BKEGG
rno05162MeaslesKEGG
rno05164Influenza AKEGG
rno05168Herpes simplex virus 1 infectionKEGG
rno05169Epstein-Barr virus infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006384's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000006384Ddx585532.335ENSG00000108771DHX589537.895Homo_sapiens
ENSRNOG00000006384Ddx589976.351ENSG00000107201DDX586476.351Homo_sapiens
ENSRNOG00000006384Ddx589331.000ENSAPOG00000024529ifih15931.115Acanthochromis_polyacanthus
ENSRNOG00000006384Ddx589973.534ENSAMEG00000003766DDX586473.534Ailuropoda_melanoleuca
ENSRNOG00000006384Ddx588751.036ENSAPLG00000015091DDX586151.036Anas_platyrhynchos
ENSRNOG00000006384Ddx588249.491ENSACAG00000001354DDX585349.491Anolis_carolinensis
ENSRNOG00000006384Ddx588780.247ENSANAG00000031893DDX586180.247Aotus_nancymaae
ENSRNOG00000006384Ddx585531.845ENSANAG00000029056DHX585231.845Aotus_nancymaae
ENSRNOG00000006384Ddx589630.189ENSACLG00000012934ifih16130.189Astatotilapia_calliptera
ENSRNOG00000006384Ddx589843.854ENSAMXG00000015795-6343.854Astyanax_mexicanus
ENSRNOG00000006384Ddx585832.967ENSBTAG00000046580DHX585032.967Bos_taurus
ENSRNOG00000006384Ddx589974.707ENSBTAG00000003366DDX585874.707Bos_taurus
ENSRNOG00000006384Ddx589976.520ENSCJAG00000007741DDX586776.520Callithrix_jacchus
ENSRNOG00000006384Ddx589975.042ENSCAFG00000001807DDX586475.042Canis_familiaris
ENSRNOG00000006384Ddx585533.433ENSCAFG00020013642DHX585432.967Canis_lupus_dingo
ENSRNOG00000006384Ddx589630.807ENSCAFG00020004329IFIH16230.866Canis_lupus_dingo
ENSRNOG00000006384Ddx589975.377ENSCAFG00020014567DDX586375.377Canis_lupus_dingo
ENSRNOG00000006384Ddx589973.869ENSCHIG00000025883DDX586373.869Capra_hircus
ENSRNOG00000006384Ddx589975.507ENSTSYG00000004200DDX586475.507Carlito_syrichta
ENSRNOG00000006384Ddx587280.000ENSCAPG00000007816DDX585480.000Cavia_aperea
ENSRNOG00000006384Ddx585633.731ENSCAPG00000016521DHX585333.731Cavia_aperea
ENSRNOG00000006384Ddx587234.361ENSCAPG00000009502IFIH15333.933Cavia_aperea
ENSRNOG00000006384Ddx589975.885ENSCPOG00000001598DDX586575.885Cavia_porcellus
ENSRNOG00000006384Ddx586436.740ENSCPOG00000007154IFIH16230.746Cavia_porcellus
ENSRNOG00000006384Ddx589975.338ENSCCAG00000036752DDX586475.338Cebus_capucinus
ENSRNOG00000006384Ddx589976.520ENSCATG00000040246DDX586476.520Cercocebus_atys
ENSRNOG00000006384Ddx589175.461ENSCLAG00000002351DDX586275.461Chinchilla_lanigera
ENSRNOG00000006384Ddx585638.527ENSCLAG00000008509IFIH16130.628Chinchilla_lanigera
ENSRNOG00000006384Ddx589977.027ENSCSAG00000009834DDX586477.027Chlorocebus_sabaeus
ENSRNOG00000006384Ddx588972.368ENSCHOG00000009019DDX585872.368Choloepus_hoffmanni
ENSRNOG00000006384Ddx589954.104ENSCPBG00000008101DDX586454.104Chrysemys_picta_bellii
ENSRNOG00000006384Ddx585833.521ENSCING00000009744-5033.521Ciona_intestinalis
ENSRNOG00000006384Ddx589975.676ENSCANG00000031971DDX586475.676Colobus_angolensis_palliatus
ENSRNOG00000006384Ddx589987.162ENSCGRG00001024123Ddx586487.162Cricetulus_griseus_chok1gshd
ENSRNOG00000006384Ddx586733.181ENSCGRG00001024740Ifih16130.000Cricetulus_griseus_chok1gshd
ENSRNOG00000006384Ddx586733.181ENSCGRG00000010637Ifih16130.000Cricetulus_griseus_crigri
ENSRNOG00000006384Ddx589979.461ENSCGRG00000003581Ddx586579.461Cricetulus_griseus_crigri
ENSRNOG00000006384Ddx585733.141ENSDARG00000089463dhx586233.141Danio_rerio
ENSRNOG00000006384Ddx589630.421ENSDARG00000018553ifih17531.773Danio_rerio
ENSRNOG00000006384Ddx589972.074ENSDNOG00000003968DDX586472.074Dasypus_novemcinctus
ENSRNOG00000006384Ddx589976.182ENSDORG00000027625Ddx586476.182Dipodomys_ordii
ENSRNOG00000006384Ddx589730.757ENSDORG00000001907Ifih16030.757Dipodomys_ordii
ENSRNOG00000006384Ddx589973.869ENSEASG00005004589DDX585873.869Equus_asinus_asinus
ENSRNOG00000006384Ddx585831.680ENSEASG00005009112DHX585031.680Equus_asinus_asinus
ENSRNOG00000006384Ddx589974.037ENSECAG00000021989DDX586274.286Equus_caballus
ENSRNOG00000006384Ddx585831.680ENSECAG00000011439DHX585031.680Equus_caballus
ENSRNOG00000006384Ddx587873.457ENSEEUG00000015254DDX585073.457Erinaceus_europaeus
ENSRNOG00000006384Ddx589142.679ENSELUG00000005444-7042.435Esox_lucius
ENSRNOG00000006384Ddx589975.377ENSFCAG00000001294DDX586475.377Felis_catus
ENSRNOG00000006384Ddx589052.102ENSFALG00000001146DDX586151.718Ficedula_albicollis
ENSRNOG00000006384Ddx588932.007ENSFHEG00000022714ifih15632.007Fundulus_heteroclitus
ENSRNOG00000006384Ddx585933.880ENSGMOG00000015145dhx585033.880Gadus_morhua
ENSRNOG00000006384Ddx589954.104ENSGAGG00000018278DDX586454.104Gopherus_agassizii
ENSRNOG00000006384Ddx589976.182ENSGGOG00000016335DDX586476.182Gorilla_gorilla
ENSRNOG00000006384Ddx589630.695ENSHBUG00000004855ifih16130.695Haplochromis_burtoni
ENSRNOG00000006384Ddx589975.338ENSHGLG00000016504DDX586475.338Heterocephalus_glaber_female
ENSRNOG00000006384Ddx589975.338ENSHGLG00100000205DDX586475.338Heterocephalus_glaber_male
ENSRNOG00000006384Ddx589741.107ENSIPUG00000003114ddx586141.107Ictalurus_punctatus
ENSRNOG00000006384Ddx589631.736ENSSTOG00000004953IFIH15931.588Ictidomys_tridecemlineatus
ENSRNOG00000006384Ddx589972.804ENSSTOG00000006994DDX586472.804Ictidomys_tridecemlineatus
ENSRNOG00000006384Ddx587234.858ENSJJAG00000018669Ifih15931.311Jaculus_jaculus
ENSRNOG00000006384Ddx589977.534ENSJJAG00000004582Ddx588077.534Jaculus_jaculus
ENSRNOG00000006384Ddx586338.071ENSLACG00000011448IFIH15038.071Latimeria_chalumnae
ENSRNOG00000006384Ddx589949.749ENSLACG00000000411DDX586449.749Latimeria_chalumnae
ENSRNOG00000006384Ddx589430.236ENSLOCG00000008460ifih16030.236Lepisosteus_oculatus
ENSRNOG00000006384Ddx589847.395ENSLOCG00000013422DDX586347.395Lepisosteus_oculatus
ENSRNOG00000006384Ddx589841.443ENSLOCG00000006504-6440.783Lepisosteus_oculatus
ENSRNOG00000006384Ddx589972.864ENSLAFG00000005416DDX586472.864Loxodonta_africana
ENSRNOG00000006384Ddx586578.553ENSMFAG00000045674DDX585478.553Macaca_fascicularis
ENSRNOG00000006384Ddx589976.182ENSMMUG00000012442DDX586476.182Macaca_mulatta
ENSRNOG00000006384Ddx589976.182ENSMNEG00000041909DDX586476.182Macaca_nemestrina
ENSRNOG00000006384Ddx589976.689ENSMLEG00000029982DDX586476.689Mandrillus_leucophaeus
ENSRNOG00000006384Ddx589431.229ENSMAMG00000003380ifih16030.463Mastacembelus_armatus
ENSRNOG00000006384Ddx589630.533ENSMZEG00005007158ifih16130.533Maylandia_zebra
ENSRNOG00000006384Ddx589981.113ENSMAUG00000021814Ddx586381.145Mesocricetus_auratus
ENSRNOG00000006384Ddx586578.553ENSMICG00000006555DDX585478.553Microcebus_murinus
ENSRNOG00000006384Ddx589630.606ENSMOCG00000011565Ifih16030.606Microtus_ochrogaster
ENSRNOG00000006384Ddx587388.816ENSMOCG00000006173Ddx585788.852Microtus_ochrogaster
ENSRNOG00000006384Ddx589430.339ENSMMOG00000003652ifih15930.339Mola_mola
ENSRNOG00000006384Ddx589530.225MGP_CAROLIEiJ_G0023594Ifih15930.225Mus_caroli
ENSRNOG00000006384Ddx589988.156MGP_CAROLIEiJ_G0025893Ddx587781.757Mus_caroli
ENSRNOG00000006384Ddx589989.002ENSMUSG00000040296Ddx587782.601Mus_musculus
ENSRNOG00000006384Ddx589988.007MGP_PahariEiJ_G0024016Ddx588481.757Mus_pahari
ENSRNOG00000006384Ddx589987.648MGP_SPRETEiJ_G0026842Ddx587781.250Mus_spretus
ENSRNOG00000006384Ddx588930.808MGP_SPRETEiJ_G0024516Ifih15530.808Mus_spretus
ENSRNOG00000006384Ddx589373.050ENSMPUG00000004319DDX586074.113Mustela_putorius_furo
ENSRNOG00000006384Ddx589973.077ENSMLUG00000003041DDX586473.077Myotis_lucifugus
ENSRNOG00000006384Ddx589630.428ENSNGAG00000012752Ifih15930.378Nannospalax_galili
ENSRNOG00000006384Ddx589982.403ENSNGAG00000003642Ddx586482.432Nannospalax_galili
ENSRNOG00000006384Ddx589630.244ENSNBRG00000014585ifih16130.097Neolamprologus_brichardi
ENSRNOG00000006384Ddx589630.478ENSNLEG00000026782IFIH16030.506Nomascus_leucogenys
ENSRNOG00000006384Ddx588160.465ENSMEUG00000011210-5560.465Notamacropus_eugenii
ENSRNOG00000006384Ddx588168.571ENSOPRG00000016806-5268.571Ochotona_princeps
ENSRNOG00000006384Ddx589972.128ENSODEG00000015750DDX586372.128Octodon_degus
ENSRNOG00000006384Ddx586734.834ENSODEG00000013586IFIH16130.091Octodon_degus
ENSRNOG00000006384Ddx587558.667ENSOANG00000012131DDX585758.667Ornithorhynchus_anatinus
ENSRNOG00000006384Ddx585831.856ENSOCUG00000013278DHX585031.856Oryctolagus_cuniculus
ENSRNOG00000006384Ddx589973.524ENSOCUG00000004710DDX586473.524Oryctolagus_cuniculus
ENSRNOG00000006384Ddx589730.733ENSORLG00000016902ifih16230.733Oryzias_latipes
ENSRNOG00000006384Ddx589730.721ENSORLG00020022369ifih16230.721Oryzias_latipes_hni
ENSRNOG00000006384Ddx589731.024ENSORLG00015017957ifih16231.024Oryzias_latipes_hsok
ENSRNOG00000006384Ddx585931.653ENSOMEG00000023054dhx585031.653Oryzias_melastigma
ENSRNOG00000006384Ddx589132.888ENSOMEG00000002513ifih15832.831Oryzias_melastigma
ENSRNOG00000006384Ddx585730.398ENSOMEG00000023026dhx585930.398Oryzias_melastigma
ENSRNOG00000006384Ddx589974.493ENSOGAG00000010536DDX586474.493Otolemur_garnettii
ENSRNOG00000006384Ddx585831.868ENSOARG00000018383DHX585031.868Ovis_aries
ENSRNOG00000006384Ddx589974.037ENSOARG00000014731DDX586374.037Ovis_aries
ENSRNOG00000006384Ddx589976.351ENSPPAG00000041750DDX586476.351Pan_paniscus
ENSRNOG00000006384Ddx589975.377ENSPPRG00000010161DDX586475.377Panthera_pardus
ENSRNOG00000006384Ddx589975.209ENSPTIG00000015345DDX586475.209Panthera_tigris_altaica
ENSRNOG00000006384Ddx589976.351ENSPTRG00000020844DDX586476.351Pan_troglodytes
ENSRNOG00000006384Ddx589976.520ENSPANG00000025269DDX586476.520Papio_anubis
ENSRNOG00000006384Ddx585834.454ENSPKIG00000020140dhx585234.454Paramormyrops_kingsleyae
ENSRNOG00000006384Ddx589945.424ENSPKIG00000017174DDX586445.424Paramormyrops_kingsleyae
ENSRNOG00000006384Ddx589954.377ENSPSIG00000013490DDX586454.377Pelodiscus_sinensis
ENSRNOG00000006384Ddx585932.982ENSPMGG00000006236ifih15332.982Periophthalmus_magnuspinnatus
ENSRNOG00000006384Ddx589989.020ENSPEMG00000012372Ddx586489.020Peromyscus_maniculatus_bairdii
ENSRNOG00000006384Ddx589730.882ENSPEMG00000014586Ifih16030.882Peromyscus_maniculatus_bairdii
ENSRNOG00000006384Ddx5810058.429ENSPCIG00000029320RIG-I6558.429Phascolarctos_cinereus
ENSRNOG00000006384Ddx585934.078ENSPCIG00000020229LGP25334.078Phascolarctos_cinereus
ENSRNOG00000006384Ddx585833.898ENSPLAG00000021657dhx586133.898Poecilia_latipinna
ENSRNOG00000006384Ddx589176.015ENSPPYG00000019149DDX586276.015Pongo_abelii
ENSRNOG00000006384Ddx586570.876ENSPCOG00000027117DDX585170.876Propithecus_coquereli
ENSRNOG00000006384Ddx585830.790ENSPVAG00000003855DHX585030.790Pteropus_vampyrus
ENSRNOG00000006384Ddx589975.168ENSPVAG00000009207DDX586475.168Pteropus_vampyrus
ENSRNOG00000006384Ddx589630.449ENSPNYG00000002971ifih16130.449Pundamilia_nyererei
ENSRNOG00000006384Ddx589844.073ENSPNAG00000002347-6343.781Pygocentrus_nattereri
ENSRNOG00000006384Ddx589974.155ENSRBIG00000040257DDX586374.155Rhinopithecus_bieti
ENSRNOG00000006384Ddx589975.676ENSRROG00000029512DDX586475.676Rhinopithecus_roxellana
ENSRNOG00000006384Ddx589976.520ENSSBOG00000030627DDX586376.520Saimiri_boliviensis_boliviensis
ENSRNOG00000006384Ddx589845.305ENSSFOG00015017386ddx586445.305Scleropages_formosus
ENSRNOG00000006384Ddx589430.720ENSSMAG00000012345ifih16330.720Scophthalmus_maximus
ENSRNOG00000006384Ddx589962.353ENSSARG00000008445DDX586462.353Sorex_araneus
ENSRNOG00000006384Ddx589951.765ENSSPUG00000002608DDX586351.765Sphenodon_punctatus
ENSRNOG00000006384Ddx589031.295ENSSPAG00000000528ifih15530.298Stegastes_partitus
ENSRNOG00000006384Ddx589631.405ENSSSCG00000015897IFIH16130.475Sus_scrofa
ENSRNOG00000006384Ddx589974.372ENSSSCG00000030408DDX587174.372Sus_scrofa
ENSRNOG00000006384Ddx589951.248ENSTGUG00000001516DDX586551.414Taeniopygia_guttata
ENSRNOG00000006384Ddx589630.186ENSTTRG00000013780IFIH16230.046Tursiops_truncatus
ENSRNOG00000006384Ddx587568.958ENSTTRG00000016993DDX585768.958Tursiops_truncatus
ENSRNOG00000006384Ddx585532.537ENSUAMG00000024348DHX585932.537Ursus_americanus
ENSRNOG00000006384Ddx589631.040ENSUAMG00000015811IFIH15931.960Ursus_americanus
ENSRNOG00000006384Ddx589974.037ENSUAMG00000020703DDX586474.037Ursus_americanus
ENSRNOG00000006384Ddx589973.869ENSUMAG00000005813DDX586473.869Ursus_maritimus
ENSRNOG00000006384Ddx585637.784ENSVPAG00000010823IFIH15532.442Vicugna_pacos
ENSRNOG00000006384Ddx589372.302ENSVPAG00000009880DDX586272.302Vicugna_pacos
ENSRNOG00000006384Ddx589175.503ENSVVUG00000021149DDX586275.503Vulpes_vulpes
ENSRNOG00000006384Ddx589630.144ENSVVUG00000018569IFIH16330.794Vulpes_vulpes
ENSRNOG00000006384Ddx589947.731ENSXETG00000009200ddx586447.731Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002230positive regulation of defense response to virus by host-ISOProcess
GO:0002735positive regulation of myeloid dendritic cell cytokine production-ISOProcess
GO:0003677DNA binding-IEAFunction
GO:0003690double-stranded DNA binding-ISOFunction
GO:0003725double-stranded RNA binding-ISOFunction
GO:0003727single-stranded RNA binding-ISOFunction
GO:0005524ATP binding-IEAFunction
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005923bicellular tight junction-ISOComponent
GO:0008270zinc ion binding-ISOFunction
GO:0009597detection of virus-ISOProcess
GO:0009615response to virus-ISOProcess
GO:0010628positive regulation of gene expression-ISOProcess
GO:0015629actin cytoskeleton-ISOComponent
GO:0016787hydrolase activity-IEAFunction
GO:0030334regulation of cell migration-ISOProcess
GO:0031625ubiquitin protein ligase binding-ISOFunction
GO:0032587ruffle membrane-ISOComponent
GO:0032725positive regulation of granulocyte macrophage colony-stimulating factor production-ISOProcess
GO:0032727positive regulation of interferon-alpha production-ISOProcess
GO:0032728positive regulation of interferon-beta production-ISOProcess
GO:0032755positive regulation of interleukin-6 production-ISOProcess
GO:0032757positive regulation of interleukin-8 production-ISOProcess
GO:0035549positive regulation of interferon-beta secretion-ISOProcess
GO:0039529RIG-I signaling pathway-ISOProcess
GO:0042802identical protein binding-ISOFunction
GO:0043330response to exogenous dsRNA-ISOProcess
GO:0045087innate immune response-ISOProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0051091positive regulation of DNA-binding transcription factor activity-ISOProcess
GO:0051607defense response to virus-ISOProcess
GO:0060760positive regulation of response to cytokine stimulus-ISOProcess
GO:0071360cellular response to exogenous dsRNA-ISOProcess
GO:1902741positive regulation of interferon-alpha secretion-ISOProcess
GO:1904469positive regulation of tumor necrosis factor secretion-ISOProcess
GO:2000778positive regulation of interleukin-6 secretion-ISOProcess

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