EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006391 (Gene tree)
Gene ID: 312398
Gene Symbol: Smarcad1
Alias: LOC312398
Full Name: SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1`
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 60506 bases
Position: chr4:95884743-95945248
Accession: 1309640
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008585	ResIII	PF04851.15	7.6e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008585	-	4795	XM_006236599	ENSRNOP00000008585	1024 (aa)	XP_006236661	D3Z9Z9

Gene Model

Click here to download ENSRNOG00000006391's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006391's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000006391	Smarcad1	51	37.158	ENSRNOG00000047692	LOC100911660	66	37.158
ENSRNOG00000006391	Smarcad1	51	37.158	ENSRNOG00000047104	Hells	64	37.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006391	Smarcad1	100	93.087	ENSG00000163104	SMARCAD1	100	96.812	Homo_sapiens
ENSRNOG00000006391	Smarcad1	68	62.375	ENSAPOG00000011446	smarcad1a	65	62.375	Acanthochromis_polyacanthus
ENSRNOG00000006391	Smarcad1	100	92.517	ENSAMEG00000005844	SMARCAD1	100	92.517	Ailuropoda_melanoleuca
ENSRNOG00000006391	Smarcad1	68	68.401	ENSACIG00000018326	smarcad1a	100	68.401	Amphilophus_citrinellus
ENSRNOG00000006391	Smarcad1	100	62.375	ENSAOCG00000019762	smarcad1a	95	62.375	Amphiprion_ocellaris
ENSRNOG00000006391	Smarcad1	100	62.518	ENSAPEG00000003889	smarcad1a	95	62.518	Amphiprion_percula
ENSRNOG00000006391	Smarcad1	79	67.788	ENSATEG00000015608	smarcad1a	85	67.788	Anabas_testudineus
ENSRNOG00000006391	Smarcad1	94	71.488	ENSAPLG00000004630	SMARCAD1	100	71.591	Anas_platyrhynchos
ENSRNOG00000006391	Smarcad1	100	69.350	ENSACAG00000013554	SMARCAD1	100	70.097	Anolis_carolinensis
ENSRNOG00000006391	Smarcad1	100	92.809	ENSANAG00000020488	SMARCAD1	100	92.809	Aotus_nancymaae
ENSRNOG00000006391	Smarcad1	63	66.459	ENSACLG00000017063	smarcad1a	62	66.459	Astatotilapia_calliptera
ENSRNOG00000006391	Smarcad1	69	61.798	ENSAMXG00000015470	smarcad1a	98	61.798	Astyanax_mexicanus
ENSRNOG00000006391	Smarcad1	77	58.477	ENSAMXG00000019130	smarcad1b	89	57.844	Astyanax_mexicanus
ENSRNOG00000006391	Smarcad1	100	92.136	ENSBTAG00000017061	SMARCAD1	100	92.136	Bos_taurus
ENSRNOG00000006391	Smarcad1	100	93.275	ENSCJAG00000006778	SMARCAD1	100	93.275	Callithrix_jacchus
ENSRNOG00000006391	Smarcad1	100	92.323	ENSCAFG00000010026	SMARCAD1	100	92.323	Canis_familiaris
ENSRNOG00000006391	Smarcad1	87	93.363	ENSCAFG00020003994	SMARCAD1	99	93.363	Canis_lupus_dingo
ENSRNOG00000006391	Smarcad1	100	92.225	ENSCHIG00000012905	SMARCAD1	100	92.225	Capra_hircus
ENSRNOG00000006391	Smarcad1	100	93.385	ENSTSYG00000002706	SMARCAD1	100	93.385	Carlito_syrichta
ENSRNOG00000006391	Smarcad1	90	75.858	ENSCAPG00000016744	SMARCAD1	96	76.940	Cavia_aperea
ENSRNOG00000006391	Smarcad1	100	91.481	ENSCPOG00000011398	SMARCAD1	100	91.481	Cavia_porcellus
ENSRNOG00000006391	Smarcad1	100	93.087	ENSCCAG00000022264	SMARCAD1	100	96.812	Cebus_capucinus
ENSRNOG00000006391	Smarcad1	100	93.476	ENSCATG00000035663	SMARCAD1	100	93.476	Cercocebus_atys
ENSRNOG00000006391	Smarcad1	82	94.405	ENSCSAG00000004186	SMARCAD1	100	94.405	Chlorocebus_sabaeus
ENSRNOG00000006391	Smarcad1	100	72.302	ENSCPBG00000013203	SMARCAD1	100	73.033	Chrysemys_picta_bellii
ENSRNOG00000006391	Smarcad1	64	49.249	ENSCING00000001688	-	99	49.249	Ciona_intestinalis
ENSRNOG00000006391	Smarcad1	100	93.379	ENSCANG00000003556	SMARCAD1	100	96.812	Colobus_angolensis_palliatus
ENSRNOG00000006391	Smarcad1	100	94.824	ENSCGRG00001015056	Smarcad1	100	94.824	Cricetulus_griseus_chok1gshd
ENSRNOG00000006391	Smarcad1	100	94.824	ENSCGRG00000014087	Smarcad1	100	94.824	Cricetulus_griseus_crigri
ENSRNOG00000006391	Smarcad1	65	63.244	ENSCSEG00000017903	smarcad1a	100	46.690	Cynoglossus_semilaevis
ENSRNOG00000006391	Smarcad1	95	62.351	ENSCSEG00000014419	-	100	45.878	Cynoglossus_semilaevis
ENSRNOG00000006391	Smarcad1	78	57.463	ENSDARG00000073721	smarcad1b	84	57.745	Danio_rerio
ENSRNOG00000006391	Smarcad1	62	64.945	ENSDARG00000014041	smarcad1a	92	55.142	Danio_rerio
ENSRNOG00000006391	Smarcad1	100	92.113	ENSDNOG00000000806	-	100	92.113	Dasypus_novemcinctus
ENSRNOG00000006391	Smarcad1	100	89.699	ENSDORG00000012331	Smarcad1	100	89.699	Dipodomys_ordii
ENSRNOG00000006391	Smarcad1	63	46.000	FBgn0032157	Etl1	80	44.868	Drosophila_melanogaster
ENSRNOG00000006391	Smarcad1	61	46.178	ENSEBUG00000003969	smarcad1a	96	46.353	Eptatretus_burgeri
ENSRNOG00000006391	Smarcad1	100	92.614	ENSEASG00005012382	SMARCAD1	100	92.614	Equus_asinus_asinus
ENSRNOG00000006391	Smarcad1	100	92.614	ENSECAG00000011562	SMARCAD1	100	92.614	Equus_caballus
ENSRNOG00000006391	Smarcad1	100	50.509	ENSELUG00000018535	smarcad1a	100	50.509	Esox_lucius
ENSRNOG00000006391	Smarcad1	78	57.160	ENSELUG00000019154	smarcad1b	81	57.160	Esox_lucius
ENSRNOG00000006391	Smarcad1	100	92.315	ENSFCAG00000003958	SMARCAD1	100	96.812	Felis_catus
ENSRNOG00000006391	Smarcad1	100	66.699	ENSFALG00000006089	SMARCAD1	100	66.699	Ficedula_albicollis
ENSRNOG00000006391	Smarcad1	100	92.495	ENSFDAG00000017027	SMARCAD1	100	92.495	Fukomys_damarensis
ENSRNOG00000006391	Smarcad1	65	65.172	ENSFHEG00000012778	smarcad1a	63	64.265	Fundulus_heteroclitus
ENSRNOG00000006391	Smarcad1	84	57.126	ENSGMOG00000018995	smarcad1a	97	57.737	Gadus_morhua
ENSRNOG00000006391	Smarcad1	79	71.585	ENSGALG00000037339	SMARCAD1	99	71.585	Gallus_gallus
ENSRNOG00000006391	Smarcad1	90	66.509	ENSGAFG00000013498	smarcad1a	82	66.509	Gambusia_affinis
ENSRNOG00000006391	Smarcad1	85	58.039	ENSGACG00000007327	smarcad1a	99	58.039	Gasterosteus_aculeatus
ENSRNOG00000006391	Smarcad1	100	72.622	ENSGAGG00000008582	SMARCAD1	100	72.999	Gopherus_agassizii
ENSRNOG00000006391	Smarcad1	100	93.184	ENSGGOG00000023001	SMARCAD1	100	93.184	Gorilla_gorilla
ENSRNOG00000006391	Smarcad1	92	66.303	ENSHBUG00000011042	smarcad1a	90	66.303	Haplochromis_burtoni
ENSRNOG00000006391	Smarcad1	100	92.524	ENSHGLG00000005070	SMARCAD1	100	92.524	Heterocephalus_glaber_female
ENSRNOG00000006391	Smarcad1	100	92.524	ENSHGLG00100006812	SMARCAD1	100	92.524	Heterocephalus_glaber_male
ENSRNOG00000006391	Smarcad1	85	64.230	ENSHCOG00000007848	smarcad1a	87	62.631	Hippocampus_comes
ENSRNOG00000006391	Smarcad1	79	57.509	ENSIPUG00000022817	smarcad1b	88	57.998	Ictalurus_punctatus
ENSRNOG00000006391	Smarcad1	76	65.102	ENSIPUG00000000242	smarcad1a	92	60.333	Ictalurus_punctatus
ENSRNOG00000006391	Smarcad1	100	93.191	ENSSTOG00000001227	SMARCAD1	100	93.191	Ictidomys_tridecemlineatus
ENSRNOG00000006391	Smarcad1	100	93.379	ENSJJAG00000022342	Smarcad1	100	93.379	Jaculus_jaculus
ENSRNOG00000006391	Smarcad1	64	63.897	ENSKMAG00000021351	smarcad1a	63	63.447	Kryptolebias_marmoratus
ENSRNOG00000006391	Smarcad1	97	64.040	ENSLBEG00000008088	smarcad1a	90	64.040	Labrus_bergylta
ENSRNOG00000006391	Smarcad1	100	53.184	ENSLOCG00000012909	smarcad1a	100	55.803	Lepisosteus_oculatus
ENSRNOG00000006391	Smarcad1	100	90.750	ENSLAFG00000000040	SMARCAD1	100	90.750	Loxodonta_africana
ENSRNOG00000006391	Smarcad1	100	93.379	ENSMFAG00000042606	SMARCAD1	100	93.379	Macaca_fascicularis
ENSRNOG00000006391	Smarcad1	87	94.144	ENSMMUG00000022242	SMARCAD1	99	94.144	Macaca_mulatta
ENSRNOG00000006391	Smarcad1	100	93.281	ENSMNEG00000038117	SMARCAD1	100	96.644	Macaca_nemestrina
ENSRNOG00000006391	Smarcad1	100	93.476	ENSMLEG00000038333	SMARCAD1	100	96.812	Mandrillus_leucophaeus
ENSRNOG00000006391	Smarcad1	69	62.813	ENSMAMG00000000933	smarcad1a	68	62.813	Mastacembelus_armatus
ENSRNOG00000006391	Smarcad1	63	66.459	ENSMZEG00005005203	smarcad1a	62	66.459	Maylandia_zebra
ENSRNOG00000006391	Smarcad1	94	64.095	ENSMGAG00000005577	SMARCAD1	100	64.095	Meleagris_gallopavo
ENSRNOG00000006391	Smarcad1	100	94.727	ENSMAUG00000008417	Smarcad1	100	94.727	Mesocricetus_auratus
ENSRNOG00000006391	Smarcad1	100	92.233	ENSMICG00000009746	SMARCAD1	100	92.233	Microcebus_murinus
ENSRNOG00000006391	Smarcad1	100	95.117	ENSMOCG00000017142	Smarcad1	100	95.117	Microtus_ochrogaster
ENSRNOG00000006391	Smarcad1	77	58.052	ENSMMOG00000000275	smarcad1a	98	58.052	Mola_mola
ENSRNOG00000006391	Smarcad1	100	79.344	ENSMODG00000019268	SMARCAD1	100	79.344	Monodelphis_domestica
ENSRNOG00000006391	Smarcad1	95	97.636	MGP_CAROLIEiJ_G0028458	-	77	97.636	Mus_caroli
ENSRNOG00000006391	Smarcad1	100	97.070	ENSMUSG00000029920	Smarcad1	100	97.070	Mus_musculus
ENSRNOG00000006391	Smarcad1	100	97.363	MGP_PahariEiJ_G0022198	Smarcad1	100	97.363	Mus_pahari
ENSRNOG00000006391	Smarcad1	100	96.973	MGP_SPRETEiJ_G0029462	Smarcad1	100	96.973	Mus_spretus
ENSRNOG00000006391	Smarcad1	100	92.517	ENSMPUG00000002111	SMARCAD1	100	92.517	Mustela_putorius_furo
ENSRNOG00000006391	Smarcad1	100	89.407	ENSMLUG00000000425	SMARCAD1	100	89.407	Myotis_lucifugus
ENSRNOG00000006391	Smarcad1	100	92.788	ENSNGAG00000000810	Smarcad1	100	92.788	Nannospalax_galili
ENSRNOG00000006391	Smarcad1	61	66.667	ENSNBRG00000012749	smarcad1a	74	66.667	Neolamprologus_brichardi
ENSRNOG00000006391	Smarcad1	100	93.184	ENSNLEG00000014225	SMARCAD1	100	96.812	Nomascus_leucogenys
ENSRNOG00000006391	Smarcad1	100	91.748	ENSODEG00000004334	SMARCAD1	100	91.748	Octodon_degus
ENSRNOG00000006391	Smarcad1	100	51.942	ENSONIG00000015059	smarcad1a	100	52.233	Oreochromis_niloticus
ENSRNOG00000006391	Smarcad1	80	82.850	ENSOANG00000013764	SMARCAD1	100	82.850	Ornithorhynchus_anatinus
ENSRNOG00000006391	Smarcad1	100	93.372	ENSOCUG00000017283	SMARCAD1	100	93.372	Oryctolagus_cuniculus
ENSRNOG00000006391	Smarcad1	63	66.771	ENSORLG00000004869	smarcad1a	64	64.243	Oryzias_latipes
ENSRNOG00000006391	Smarcad1	63	66.615	ENSORLG00020020569	smarcad1a	64	64.095	Oryzias_latipes_hni
ENSRNOG00000006391	Smarcad1	63	66.459	ENSORLG00015009045	smarcad1a	69	60.959	Oryzias_latipes_hsok
ENSRNOG00000006391	Smarcad1	65	64.962	ENSOMEG00000023032	smarcad1a	63	64.627	Oryzias_melastigma
ENSRNOG00000006391	Smarcad1	100	92.233	ENSOGAG00000011444	SMARCAD1	100	92.233	Otolemur_garnettii
ENSRNOG00000006391	Smarcad1	100	92.225	ENSOARG00000017851	SMARCAD1	100	92.225	Ovis_aries
ENSRNOG00000006391	Smarcad1	100	93.281	ENSPPAG00000035715	SMARCAD1	100	93.281	Pan_paniscus
ENSRNOG00000006391	Smarcad1	100	92.315	ENSPPRG00000024756	SMARCAD1	100	96.812	Panthera_pardus
ENSRNOG00000006391	Smarcad1	100	92.136	ENSPTIG00000017868	SMARCAD1	100	92.136	Panthera_tigris_altaica
ENSRNOG00000006391	Smarcad1	100	93.184	ENSPTRG00000023126	SMARCAD1	100	96.812	Pan_troglodytes
ENSRNOG00000006391	Smarcad1	100	92.330	ENSPANG00000019757	SMARCAD1	100	92.330	Papio_anubis
ENSRNOG00000006391	Smarcad1	100	71.648	ENSPSIG00000010255	SMARCAD1	100	71.743	Pelodiscus_sinensis
ENSRNOG00000006391	Smarcad1	63	64.386	ENSPMGG00000010735	smarcad1a	95	62.704	Periophthalmus_magnuspinnatus
ENSRNOG00000006391	Smarcad1	100	80.859	ENSPEMG00000001854	Smarcad1	100	80.859	Peromyscus_maniculatus_bairdii
ENSRNOG00000006391	Smarcad1	84	52.483	ENSPMAG00000003516	smarcad1a	99	47.755	Petromyzon_marinus
ENSRNOG00000006391	Smarcad1	77	85.588	ENSPCIG00000008137	SMARCAD1	98	86.951	Phascolarctos_cinereus
ENSRNOG00000006391	Smarcad1	91	66.459	ENSPFOG00000019116	smarcad1a	80	66.459	Poecilia_formosa
ENSRNOG00000006391	Smarcad1	63	66.303	ENSPLAG00000000108	smarcad1a	58	66.303	Poecilia_latipinna
ENSRNOG00000006391	Smarcad1	91	66.459	ENSPMEG00000009155	smarcad1a	80	66.459	Poecilia_mexicana
ENSRNOG00000006391	Smarcad1	92	66.927	ENSPREG00000018185	smarcad1a	83	66.927	Poecilia_reticulata
ENSRNOG00000006391	Smarcad1	100	92.607	ENSPPYG00000014935	SMARCAD1	100	92.607	Pongo_abelii
ENSRNOG00000006391	Smarcad1	73	93.770	ENSPCOG00000020478	SMARCAD1	89	93.770	Propithecus_coquereli
ENSRNOG00000006391	Smarcad1	100	90.485	ENSPVAG00000001760	SMARCAD1	100	90.485	Pteropus_vampyrus
ENSRNOG00000006391	Smarcad1	61	66.186	ENSPNYG00000010087	smarcad1a	74	66.186	Pundamilia_nyererei
ENSRNOG00000006391	Smarcad1	100	50.140	ENSPNAG00000001663	smarcad1a	100	50.140	Pygocentrus_nattereri
ENSRNOG00000006391	Smarcad1	77	58.591	ENSPNAG00000010099	smarcad1b	86	58.765	Pygocentrus_nattereri
ENSRNOG00000006391	Smarcad1	100	93.281	ENSRBIG00000041989	SMARCAD1	100	93.281	Rhinopithecus_bieti
ENSRNOG00000006391	Smarcad1	100	93.281	ENSRROG00000035309	SMARCAD1	100	93.281	Rhinopithecus_roxellana
ENSRNOG00000006391	Smarcad1	100	93.087	ENSSBOG00000032114	SMARCAD1	100	96.812	Saimiri_boliviensis_boliviensis
ENSRNOG00000006391	Smarcad1	100	80.212	ENSSHAG00000001279	SMARCAD1	100	80.309	Sarcophilus_harrisii
ENSRNOG00000006391	Smarcad1	75	57.273	ENSSFOG00015020909	smarcad1a	100	57.273	Scleropages_formosus
ENSRNOG00000006391	Smarcad1	84	55.507	ENSSFOG00015016814	smarcad1b	100	49.907	Scleropages_formosus
ENSRNOG00000006391	Smarcad1	65	65.579	ENSSMAG00000001326	smarcad1a	89	67.239	Scophthalmus_maximus
ENSRNOG00000006391	Smarcad1	68	62.984	ENSSDUG00000022338	smarcad1a	84	62.079	Seriola_dumerili
ENSRNOG00000006391	Smarcad1	63	65.991	ENSSLDG00000024986	smarcad1a	60	65.991	Seriola_lalandi_dorsalis
ENSRNOG00000006391	Smarcad1	58	84.422	ENSSPUG00000004633	SMARCAD1	100	84.422	Sphenodon_punctatus
ENSRNOG00000006391	Smarcad1	68	63.324	ENSSPAG00000001970	smarcad1a	95	63.324	Stegastes_partitus
ENSRNOG00000006391	Smarcad1	100	92.420	ENSSSCG00000009193	SMARCAD1	100	93.817	Sus_scrofa
ENSRNOG00000006391	Smarcad1	76	76.493	ENSTGUG00000003127	SMARCAD1	100	76.747	Taeniopygia_guttata
ENSRNOG00000006391	Smarcad1	84	57.388	ENSTNIG00000017585	smarcad1a	99	57.714	Tetraodon_nigroviridis
ENSRNOG00000006391	Smarcad1	91	96.627	ENSTBEG00000002789	SMARCAD1	91	96.627	Tupaia_belangeri
ENSRNOG00000006391	Smarcad1	98	91.071	ENSTTRG00000000226	SMARCAD1	100	91.071	Tursiops_truncatus
ENSRNOG00000006391	Smarcad1	100	92.614	ENSUAMG00000022262	SMARCAD1	99	93.935	Ursus_americanus
ENSRNOG00000006391	Smarcad1	100	92.510	ENSUMAG00000004549	SMARCAD1	100	92.510	Ursus_maritimus
ENSRNOG00000006391	Smarcad1	100	92.517	ENSVVUG00000007271	SMARCAD1	100	93.936	Vulpes_vulpes
ENSRNOG00000006391	Smarcad1	84	65.336	ENSXETG00000019214	smarcad1	100	65.336	Xenopus_tropicalis
ENSRNOG00000006391	Smarcad1	76	58.839	ENSXCOG00000005232	smarcad1a	90	56.439	Xiphophorus_couchianus
ENSRNOG00000006391	Smarcad1	63	66.147	ENSXMAG00000015350	smarcad1a	58	66.147	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000018	regulation of DNA recombination	-	IEA	Process
GO:0000018	regulation of DNA recombination	-	ISO	Process
GO:0000729	DNA double-strand break processing	-	ISO	Process
GO:0000729	DNA double-strand break processing	-	ISS	Process
GO:0000792	heterochromatin	-	ISO	Component
GO:0000792	heterochromatin	-	ISS	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0035861	site of double-strand break	-	ISO	Component
GO:0035861	site of double-strand break	-	ISS	Component
GO:0043044	ATP-dependent chromatin remodeling	-	ISO	Process
GO:0043044	ATP-dependent chromatin remodeling	-	ISS	Process
GO:0043596	nuclear replication fork	-	IEA	Component
GO:0043596	nuclear replication fork	-	ISO	Component
GO:0051304	chromosome separation	-	ISO	Process
GO:0051304	chromosome separation	-	ISS	Process
GO:0070932	histone H3 deacetylation	-	ISO	Process
GO:0070932	histone H3 deacetylation	-	ISS	Process
GO:0070933	histone H4 deacetylation	-	ISO	Process
GO:0070933	histone H4 deacetylation	-	ISS	Process