EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006392 (Gene tree)
Gene ID: 25019
Gene Symbol: Xrcc6
Alias: G22p1|Ku70|Kup70
Full Name: X-ray repair cross complementing 6
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 20852 bases
Position: chr7:123259761-123280612
Accession: 2643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008819	SAP	PF02037.27	1.3e-08	1	1
ENSRNOP00000061920	SAP	PF02037.27	1.3e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008819	-	2200	XM_008765671	ENSRNOP00000008819	608 (aa)	XP_008763893	Q6AZ64
ENSRNOT00000066849	-	1897	-	ENSRNOP00000061920	609 (aa)	-	E9PT85

Gene Model

Click here to download ENSRNOG00000006392's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006392's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006392	Xrcc6	99	83.388	ENSG00000196419	XRCC6	99	83.388	Homo_sapiens
ENSRNOG00000006392	Xrcc6	99	56.271	ENSAPOG00000012704	xrcc6	99	55.941	Acanthochromis_polyacanthus
ENSRNOG00000006392	Xrcc6	99	56.393	ENSACIG00000021277	xrcc6	99	56.436	Amphilophus_citrinellus
ENSRNOG00000006392	Xrcc6	99	55.246	ENSAOCG00000021344	xrcc6	99	55.719	Amphiprion_ocellaris
ENSRNOG00000006392	Xrcc6	99	55.574	ENSAPEG00000020712	xrcc6	99	56.046	Amphiprion_percula
ENSRNOG00000006392	Xrcc6	99	56.230	ENSATEG00000007119	xrcc6	99	56.271	Anabas_testudineus
ENSRNOG00000006392	Xrcc6	91	69.259	ENSAPLG00000004469	XRCC6	100	69.134	Anas_platyrhynchos
ENSRNOG00000006392	Xrcc6	99	82.895	ENSANAG00000018684	XRCC6	99	83.272	Aotus_nancymaae
ENSRNOG00000006392	Xrcc6	99	74.752	ENSANAG00000020017	-	99	74.587	Aotus_nancymaae
ENSRNOG00000006392	Xrcc6	99	70.608	ENSANAG00000023445	-	99	70.608	Aotus_nancymaae
ENSRNOG00000006392	Xrcc6	99	71.875	ENSANAG00000035230	-	99	71.875	Aotus_nancymaae
ENSRNOG00000006392	Xrcc6	99	56.393	ENSACLG00000018608	xrcc6	99	56.230	Astatotilapia_calliptera
ENSRNOG00000006392	Xrcc6	99	57.705	ENSAMXG00000007545	xrcc6	99	57.541	Astyanax_mexicanus
ENSRNOG00000006392	Xrcc6	99	83.224	ENSCJAG00000045512	XRCC6	99	83.224	Callithrix_jacchus
ENSRNOG00000006392	Xrcc6	99	83.251	ENSTSYG00000011348	XRCC6	99	83.087	Carlito_syrichta
ENSRNOG00000006392	Xrcc6	90	85.580	ENSCCAG00000030468	-	99	85.580	Cebus_capucinus
ENSRNOG00000006392	Xrcc6	99	69.307	ENSCCAG00000037663	-	97	69.142	Cebus_capucinus
ENSRNOG00000006392	Xrcc6	99	66.118	ENSCCAG00000035711	-	99	66.118	Cebus_capucinus
ENSRNOG00000006392	Xrcc6	99	78.783	ENSCCAG00000030041	-	95	78.454	Cebus_capucinus
ENSRNOG00000006392	Xrcc6	99	83.388	ENSCATG00000042366	XRCC6	99	83.388	Cercocebus_atys
ENSRNOG00000006392	Xrcc6	100	85.222	ENSCLAG00000016669	XRCC6	100	85.386	Chinchilla_lanigera
ENSRNOG00000006392	Xrcc6	99	83.388	ENSCSAG00000005784	XRCC6	99	83.388	Chlorocebus_sabaeus
ENSRNOG00000006392	Xrcc6	99	72.414	ENSCPBG00000020535	XRCC6	99	72.414	Chrysemys_picta_bellii
ENSRNOG00000006392	Xrcc6	96	33.616	ENSCING00000000633	-	96	33.616	Ciona_intestinalis
ENSRNOG00000006392	Xrcc6	99	83.388	ENSCANG00000031032	XRCC6	99	83.388	Colobus_angolensis_palliatus
ENSRNOG00000006392	Xrcc6	100	85.033	ENSCGRG00001019029	Xrcc6	100	85.033	Cricetulus_griseus_chok1gshd
ENSRNOG00000006392	Xrcc6	100	92.599	ENSCGRG00000001528	Xrcc6	100	92.599	Cricetulus_griseus_crigri
ENSRNOG00000006392	Xrcc6	99	56.557	ENSCSEG00000020434	xrcc6	99	56.393	Cynoglossus_semilaevis
ENSRNOG00000006392	Xrcc6	99	56.721	ENSCVAG00000002189	xrcc6	99	56.557	Cyprinodon_variegatus
ENSRNOG00000006392	Xrcc6	99	57.423	ENSDARG00000071551	xrcc6	100	57.423	Danio_rerio
ENSRNOG00000006392	Xrcc6	78	80.000	ENSETEG00000015333	-	78	81.538	Echinops_telfairi
ENSRNOG00000006392	Xrcc6	100	82.430	ENSEASG00005001514	XRCC6	100	82.594	Equus_asinus_asinus
ENSRNOG00000006392	Xrcc6	100	81.773	ENSECAG00000017563	XRCC6	100	82.771	Equus_caballus
ENSRNOG00000006392	Xrcc6	99	54.426	ENSELUG00000020301	xrcc6	99	54.262	Esox_lucius
ENSRNOG00000006392	Xrcc6	99	67.869	ENSFALG00000011908	XRCC6	97	68.033	Ficedula_albicollis
ENSRNOG00000006392	Xrcc6	99	57.541	ENSFHEG00000016833	xrcc6	99	57.377	Fundulus_heteroclitus
ENSRNOG00000006392	Xrcc6	89	55.052	ENSGMOG00000013524	xrcc6	89	55.052	Gadus_morhua
ENSRNOG00000006392	Xrcc6	99	67.103	ENSGALG00000011932	XRCC6	99	67.267	Gallus_gallus
ENSRNOG00000006392	Xrcc6	99	56.230	ENSGAFG00000008130	xrcc6	99	55.738	Gambusia_affinis
ENSRNOG00000006392	Xrcc6	99	53.734	ENSGACG00000004868	xrcc6	99	53.571	Gasterosteus_aculeatus
ENSRNOG00000006392	Xrcc6	99	71.593	ENSGAGG00000017518	XRCC6	99	71.593	Gopherus_agassizii
ENSRNOG00000006392	Xrcc6	99	83.388	ENSGGOG00000015885	XRCC6	99	83.388	Gorilla_gorilla
ENSRNOG00000006392	Xrcc6	91	57.295	ENSHBUG00000023281	xrcc6	99	57.295	Haplochromis_burtoni
ENSRNOG00000006392	Xrcc6	100	83.224	ENSHGLG00000018078	XRCC6	100	83.224	Heterocephalus_glaber_female
ENSRNOG00000006392	Xrcc6	100	83.224	ENSHGLG00100011264	XRCC6	100	83.224	Heterocephalus_glaber_male
ENSRNOG00000006392	Xrcc6	99	54.050	ENSHCOG00000009821	xrcc6	99	54.050	Hippocampus_comes
ENSRNOG00000006392	Xrcc6	96	57.411	ENSIPUG00000000767	xrcc6	100	56.046	Ictalurus_punctatus
ENSRNOG00000006392	Xrcc6	100	86.700	ENSSTOG00000009490	XRCC6	100	87.028	Ictidomys_tridecemlineatus
ENSRNOG00000006392	Xrcc6	100	80.460	ENSJJAG00000017136	Xrcc6	100	81.281	Jaculus_jaculus
ENSRNOG00000006392	Xrcc6	99	56.557	ENSKMAG00000002141	xrcc6	99	56.721	Kryptolebias_marmoratus
ENSRNOG00000006392	Xrcc6	99	56.721	ENSLBEG00000002691	xrcc6	99	56.557	Labrus_bergylta
ENSRNOG00000006392	Xrcc6	89	57.426	ENSLOCG00000011533	xrcc6	99	57.426	Lepisosteus_oculatus
ENSRNOG00000006392	Xrcc6	99	83.388	ENSMFAG00000003352	XRCC6	99	83.388	Macaca_fascicularis
ENSRNOG00000006392	Xrcc6	99	83.388	ENSMMUG00000001856	XRCC6	99	83.388	Macaca_mulatta
ENSRNOG00000006392	Xrcc6	99	83.388	ENSMNEG00000035076	XRCC6	99	83.388	Macaca_nemestrina
ENSRNOG00000006392	Xrcc6	99	83.388	ENSMLEG00000019869	XRCC6	99	83.388	Mandrillus_leucophaeus
ENSRNOG00000006392	Xrcc6	99	54.664	ENSMAMG00000003368	xrcc6	99	54.501	Mastacembelus_armatus
ENSRNOG00000006392	Xrcc6	95	54.437	ENSMAMG00000003405	xrcc6	97	54.437	Mastacembelus_armatus
ENSRNOG00000006392	Xrcc6	99	56.393	ENSMZEG00005028080	xrcc6	99	56.230	Maylandia_zebra
ENSRNOG00000006392	Xrcc6	99	67.103	ENSMGAG00000012146	XRCC6	99	67.210	Meleagris_gallopavo
ENSRNOG00000006392	Xrcc6	99	92.092	ENSMAUG00000017340	Xrcc6	100	92.092	Mesocricetus_auratus
ENSRNOG00000006392	Xrcc6	99	91.598	ENSMOCG00000015717	Xrcc6	100	91.598	Microtus_ochrogaster
ENSRNOG00000006392	Xrcc6	99	55.172	ENSMMOG00000003536	xrcc6	99	54.695	Mola_mola
ENSRNOG00000006392	Xrcc6	99	57.377	ENSMALG00000013912	xrcc6	95	57.213	Monopterus_albus
ENSRNOG00000006392	Xrcc6	100	87.829	MGP_CAROLIEiJ_G0020067	Xrcc6	100	87.829	Mus_caroli
ENSRNOG00000006392	Xrcc6	100	94.079	ENSMUSG00000022471	Xrcc6	100	94.079	Mus_musculus
ENSRNOG00000006392	Xrcc6	100	93.750	MGP_PahariEiJ_G0020069	Xrcc6	100	93.750	Mus_pahari
ENSRNOG00000006392	Xrcc6	96	93.310	MGP_SPRETEiJ_G0020967	Xrcc6	100	93.310	Mus_spretus
ENSRNOG00000006392	Xrcc6	100	89.145	ENSNGAG00000013750	Xrcc6	100	89.145	Nannospalax_galili
ENSRNOG00000006392	Xrcc6	99	56.885	ENSNBRG00000004125	xrcc6	99	56.721	Neolamprologus_brichardi
ENSRNOG00000006392	Xrcc6	95	84.111	ENSOPRG00000002386	XRCC6	99	84.111	Ochotona_princeps
ENSRNOG00000006392	Xrcc6	100	82.102	ENSODEG00000015847	XRCC6	100	82.266	Octodon_degus
ENSRNOG00000006392	Xrcc6	99	56.885	ENSONIG00000019715	xrcc6	99	56.721	Oreochromis_niloticus
ENSRNOG00000006392	Xrcc6	68	76.998	ENSOANG00000011328	XRCC6	100	76.812	Ornithorhynchus_anatinus
ENSRNOG00000006392	Xrcc6	99	85.173	ENSOCUG00000006948	XRCC6	99	85.667	Oryctolagus_cuniculus
ENSRNOG00000006392	Xrcc6	99	56.465	ENSORLG00020007820	xrcc6	99	56.465	Oryzias_latipes_hni
ENSRNOG00000006392	Xrcc6	99	56.301	ENSORLG00015006406	xrcc6	99	56.301	Oryzias_latipes_hsok
ENSRNOG00000006392	Xrcc6	99	55.810	ENSOMEG00000008998	xrcc6	99	56.209	Oryzias_melastigma
ENSRNOG00000006392	Xrcc6	99	84.211	ENSOGAG00000008821	XRCC6	100	84.211	Otolemur_garnettii
ENSRNOG00000006392	Xrcc6	99	71.875	ENSPPAG00000037167	XRCC6	99	71.875	Pan_paniscus
ENSRNOG00000006392	Xrcc6	99	83.388	ENSPTRG00000022548	XRCC6	99	84.337	Pan_troglodytes
ENSRNOG00000006392	Xrcc6	99	83.388	ENSPTRG00000045824	XRCC6	99	84.337	Pan_troglodytes
ENSRNOG00000006392	Xrcc6	99	83.224	ENSPANG00000001252	XRCC6	99	84.165	Papio_anubis
ENSRNOG00000006392	Xrcc6	99	60.458	ENSPKIG00000003974	xrcc6	100	60.131	Paramormyrops_kingsleyae
ENSRNOG00000006392	Xrcc6	99	55.556	ENSPMGG00000014220	xrcc6	100	55.390	Periophthalmus_magnuspinnatus
ENSRNOG00000006392	Xrcc6	100	90.789	ENSPEMG00000023446	Xrcc6	100	90.789	Peromyscus_maniculatus_bairdii
ENSRNOG00000006392	Xrcc6	99	77.011	ENSPCIG00000026409	XRCC6	100	76.885	Phascolarctos_cinereus
ENSRNOG00000006392	Xrcc6	99	56.885	ENSPFOG00000017173	xrcc6	99	56.721	Poecilia_formosa
ENSRNOG00000006392	Xrcc6	99	56.721	ENSPLAG00000000562	xrcc6	99	56.557	Poecilia_latipinna
ENSRNOG00000006392	Xrcc6	99	57.049	ENSPMEG00000018478	xrcc6	99	56.885	Poecilia_mexicana
ENSRNOG00000006392	Xrcc6	99	57.026	ENSPREG00000020957	xrcc6	93	56.863	Poecilia_reticulata
ENSRNOG00000006392	Xrcc6	99	73.520	ENSPPYG00000011876	XRCC6	99	73.520	Pongo_abelii
ENSRNOG00000006392	Xrcc6	100	83.224	ENSPVAG00000001168	XRCC6	100	83.224	Pteropus_vampyrus
ENSRNOG00000006392	Xrcc6	99	56.393	ENSPNYG00000003815	xrcc6	99	53.510	Pundamilia_nyererei
ENSRNOG00000006392	Xrcc6	99	76.974	ENSRBIG00000039794	XRCC6	99	76.974	Rhinopithecus_bieti
ENSRNOG00000006392	Xrcc6	99	83.388	ENSRROG00000030297	XRCC6	99	83.388	Rhinopithecus_roxellana
ENSRNOG00000006392	Xrcc6	67	70.197	ENSSBOG00000024724	-	99	70.197	Saimiri_boliviensis_boliviensis
ENSRNOG00000006392	Xrcc6	99	76.190	ENSSHAG00000010790	XRCC6	100	76.393	Sarcophilus_harrisii
ENSRNOG00000006392	Xrcc6	99	59.967	ENSSFOG00015014409	xrcc6	100	59.804	Scleropages_formosus
ENSRNOG00000006392	Xrcc6	99	56.721	ENSSMAG00000006496	xrcc6	99	56.557	Scophthalmus_maximus
ENSRNOG00000006392	Xrcc6	99	56.066	ENSSDUG00000007542	xrcc6	99	55.902	Seriola_dumerili
ENSRNOG00000006392	Xrcc6	99	55.902	ENSSLDG00000009974	xrcc6	99	55.738	Seriola_lalandi_dorsalis
ENSRNOG00000006392	Xrcc6	99	72.414	ENSSPUG00000012086	XRCC6	100	72.295	Sphenodon_punctatus
ENSRNOG00000006392	Xrcc6	99	56.230	ENSSPAG00000015199	xrcc6	99	56.066	Stegastes_partitus
ENSRNOG00000006392	Xrcc6	96	69.931	ENSTGUG00000009852	-	95	69.931	Taeniopygia_guttata
ENSRNOG00000006392	Xrcc6	99	55.207	ENSTRUG00000017070	xrcc6	99	54.516	Takifugu_rubripes
ENSRNOG00000006392	Xrcc6	95	56.566	ENSTNIG00000012947	xrcc6	99	57.071	Tetraodon_nigroviridis
ENSRNOG00000006392	Xrcc6	96	76.289	ENSTBEG00000011736	XRCC6	100	76.289	Tupaia_belangeri
ENSRNOG00000006392	Xrcc6	90	87.421	ENSTTRG00000006749	XRCC6	90	87.421	Tursiops_truncatus
ENSRNOG00000006392	Xrcc6	99	57.213	ENSXMAG00000009691	xrcc6	99	57.049	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0000784	nuclear chromosome, telomeric region	21873635.	IBA	Component
GO:0002218	activation of innate immune response	-	IEA	Process
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0003684	damaged DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	21873635.	IBA	Function
GO:0003690	double-stranded DNA binding	14576192.	IDA	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003691	double-stranded telomeric DNA binding	-	IEA	Function
GO:0003691	double-stranded telomeric DNA binding	-	ISO	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0005515	protein binding	14576192.	IPI	Function
GO:0005634	nucleus	11966321.14576192.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	-	IEA	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0005730	nucleolus	1639139.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	11175667.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006302	double-strand break repair	-	ISO	Process
GO:0006302	double-strand break repair	11966321.	TAS	Process
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0007420	brain development	9674610.	IEP	Process
GO:0008022	protein C-terminus binding	-	IEA	Function
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0010212	response to ionizing radiation	-	ISO	Process
GO:0030332	cyclin binding	-	IEA	Function
GO:0030332	cyclin binding	-	ISO	Function
GO:0032508	DNA duplex unwinding	-	IEA	Process
GO:0032991	protein-containing complex	14576192.	IDA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0032993	protein-DNA complex	-	IEA	Component
GO:0032993	protein-DNA complex	-	ISO	Component
GO:0033151	V(D)J recombination	-	ISO	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0043564	Ku70:Ku80 complex	21873635.	IBA	Component
GO:0043564	Ku70:Ku80 complex	-	ISO	Component
GO:0044212	transcription regulatory region DNA binding	-	IEA	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	IEA	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045860	positive regulation of protein kinase activity	-	IEA	Process
GO:0045860	positive regulation of protein kinase activity	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	IEA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048660	regulation of smooth muscle cell proliferation	-	IEA	Process
GO:0048660	regulation of smooth muscle cell proliferation	-	ISO	Process
GO:0050769	positive regulation of neurogenesis	-	ISO	Process
GO:0051290	protein heterotetramerization	-	IEA	Process
GO:0051290	protein heterotetramerization	-	ISO	Process
GO:0051575	5'-deoxyribose-5-phosphate lyase activity	-	IEA	Function
GO:0051575	5'-deoxyribose-5-phosphate lyase activity	-	ISO	Function
GO:0070419	nonhomologous end joining complex	-	IEA	Component
GO:0070419	nonhomologous end joining complex	-	ISO	Component
GO:0071475	cellular hyperosmotic salinity response	11175667.	IDA	Process
GO:0071480	cellular response to gamma radiation	21873635.	IBA	Process
GO:0071480	cellular response to gamma radiation	-	ISO	Process
GO:0071481	cellular response to X-ray	21873635.	IBA	Process
GO:0071481	cellular response to X-ray	11175667.	IDA	Process
GO:0097680	double-strand break repair via classical nonhomologous end joining	-	IEA	Process
GO:0097680	double-strand break repair via classical nonhomologous end joining	-	ISO	Process