EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006420 (Gene tree)
Gene ID: 366262
Gene Symbol: Rbm38
Alias: LOC366262|Rnpc1
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 12519 bases
Position: chr3:171037957-171050475
Accession: 1308503
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000008764	RRM_1	PF00076.22	5.9e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000008764	-	1689	XM_006235704	ENSRNOP00000008764	237 (aa)	XP_006235766	D3ZGE9

Gene Model

Click here to download ENSRNOG00000006420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000006420	Rbm38	91	65.546	ENSRNOG00000046547	Rbm24	100	66.667
ENSRNOG00000006420	Rbm38	55	31.333	ENSRNOG00000001156	Msi1	60	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006420	Rbm38	100	94.142	ENSG00000132819	RBM38	100	95.041	Homo_sapiens
ENSRNOG00000006420	Rbm38	89	59.914	ENSAPOG00000003301	rbm38	91	59.914	Acanthochromis_polyacanthus
ENSRNOG00000006420	Rbm38	94	65.198	ENSAPOG00000009939	-	97	65.351	Acanthochromis_polyacanthus
ENSRNOG00000006420	Rbm38	89	57.940	ENSACIG00000000010	rbm38	91	57.940	Amphilophus_citrinellus
ENSRNOG00000006420	Rbm38	94	67.532	ENSACIG00000012502	-	100	87.179	Amphilophus_citrinellus
ENSRNOG00000006420	Rbm38	95	64.348	ENSAOCG00000012559	RBM38	93	64.935	Amphiprion_ocellaris
ENSRNOG00000006420	Rbm38	89	59.914	ENSAOCG00000013497	-	91	59.914	Amphiprion_ocellaris
ENSRNOG00000006420	Rbm38	94	61.317	ENSAPEG00000023581	-	97	63.934	Amphiprion_percula
ENSRNOG00000006420	Rbm38	89	62.791	ENSAPEG00000013137	rbm38	91	59.914	Amphiprion_percula
ENSRNOG00000006420	Rbm38	91	61.607	ENSATEG00000016366	rbm38	94	61.607	Anabas_testudineus
ENSRNOG00000006420	Rbm38	94	62.140	ENSATEG00000016710	-	92	65.086	Anabas_testudineus
ENSRNOG00000006420	Rbm38	92	76.818	ENSACAG00000016238	RBM38	95	74.348	Anolis_carolinensis
ENSRNOG00000006420	Rbm38	91	94.444	ENSANAG00000031959	RBM38	100	95.041	Aotus_nancymaae
ENSRNOG00000006420	Rbm38	94	64.198	ENSACLG00000019514	-	97	64.344	Astatotilapia_calliptera
ENSRNOG00000006420	Rbm38	94	65.532	ENSAMXG00000015601	-	97	66.809	Astyanax_mexicanus
ENSRNOG00000006420	Rbm38	81	62.176	ENSAMXG00000038120	rbm38	79	62.694	Astyanax_mexicanus
ENSRNOG00000006420	Rbm38	100	90.795	ENSBTAG00000008105	RBM38	100	90.795	Bos_taurus
ENSRNOG00000006420	Rbm38	100	92.887	ENSCJAG00000019139	RBM38	100	95.041	Callithrix_jacchus
ENSRNOG00000006420	Rbm38	100	91.632	ENSCAFG00020021943	RBM38	100	91.632	Canis_lupus_dingo
ENSRNOG00000006420	Rbm38	100	89.958	ENSCHIG00000002609	RBM38	100	89.958	Capra_hircus
ENSRNOG00000006420	Rbm38	100	93.724	ENSCPOG00000012781	RBM38	100	93.724	Cavia_porcellus
ENSRNOG00000006420	Rbm38	100	92.887	ENSCCAG00000036872	RBM38	100	95.041	Cebus_capucinus
ENSRNOG00000006420	Rbm38	100	93.305	ENSCATG00000032133	RBM38	100	95.041	Cercocebus_atys
ENSRNOG00000006420	Rbm38	95	94.690	ENSCLAG00000005906	RBM38	98	94.690	Chinchilla_lanigera
ENSRNOG00000006420	Rbm38	100	93.305	ENSCSAG00000015503	RBM38	100	93.305	Chlorocebus_sabaeus
ENSRNOG00000006420	Rbm38	91	79.817	ENSCPBG00000024059	RBM38	100	79.817	Chrysemys_picta_bellii
ENSRNOG00000006420	Rbm38	99	72.269	ENSCANG00000030105	-	89	72.269	Colobus_angolensis_palliatus
ENSRNOG00000006420	Rbm38	100	96.624	ENSCGRG00001012928	Rbm38	100	96.624	Cricetulus_griseus_chok1gshd
ENSRNOG00000006420	Rbm38	70	64.286	ENSCSEG00000020943	rbm38	64	60.204	Cynoglossus_semilaevis
ENSRNOG00000006420	Rbm38	93	67.982	ENSCSEG00000004701	-	96	68.559	Cynoglossus_semilaevis
ENSRNOG00000006420	Rbm38	89	65.517	ENSCVAG00000005472	-	92	65.517	Cyprinodon_variegatus
ENSRNOG00000006420	Rbm38	89	58.298	ENSCVAG00000015952	rbm38	91	60.086	Cyprinodon_variegatus
ENSRNOG00000006420	Rbm38	89	64.126	ENSDARG00000058818	rbm38	92	64.126	Danio_rerio
ENSRNOG00000006420	Rbm38	91	87.037	ENSDNOG00000032004	RBM38	100	87.037	Dasypus_novemcinctus
ENSRNOG00000006420	Rbm38	100	89.958	ENSECAG00000007700	RBM38	100	89.958	Equus_caballus
ENSRNOG00000006420	Rbm38	100	88.750	ENSEEUG00000013489	RBM38	100	90.000	Erinaceus_europaeus
ENSRNOG00000006420	Rbm38	84	65.174	ENSELUG00000000585	-	87	65.174	Esox_lucius
ENSRNOG00000006420	Rbm38	92	65.272	ENSELUG00000005849	-	95	65.823	Esox_lucius
ENSRNOG00000006420	Rbm38	100	92.050	ENSFCAG00000042916	RBM38	100	93.388	Felis_catus
ENSRNOG00000006420	Rbm38	75	82.022	ENSFALG00000010805	RBM38	92	82.022	Ficedula_albicollis
ENSRNOG00000006420	Rbm38	89	58.369	ENSFHEG00000017748	rbm38	91	58.369	Fundulus_heteroclitus
ENSRNOG00000006420	Rbm38	89	71.759	ENSFHEG00000006160	-	92	71.759	Fundulus_heteroclitus
ENSRNOG00000006420	Rbm38	76	70.718	ENSGMOG00000016655	-	96	74.176	Gadus_morhua
ENSRNOG00000006420	Rbm38	91	78.440	ENSGALG00000026081	RBM38	100	78.899	Gallus_gallus
ENSRNOG00000006420	Rbm38	89	62.736	ENSGACG00000015224	rbm38	98	62.736	Gasterosteus_aculeatus
ENSRNOG00000006420	Rbm38	91	65.919	ENSGACG00000009873	-	100	65.625	Gasterosteus_aculeatus
ENSRNOG00000006420	Rbm38	91	80.275	ENSGAGG00000001187	RBM38	100	80.275	Gopherus_agassizii
ENSRNOG00000006420	Rbm38	94	67.532	ENSHBUG00000011778	-	97	67.100	Haplochromis_burtoni
ENSRNOG00000006420	Rbm38	100	58.776	ENSHBUG00000012058	rbm38	100	58.776	Haplochromis_burtoni
ENSRNOG00000006420	Rbm38	100	90.795	ENSHGLG00000015077	RBM38	100	90.795	Heterocephalus_glaber_female
ENSRNOG00000006420	Rbm38	81	70.051	ENSHCOG00000005622	-	55	71.066	Hippocampus_comes
ENSRNOG00000006420	Rbm38	63	68.212	ENSHCOG00000019040	rbm38	65	68.212	Hippocampus_comes
ENSRNOG00000006420	Rbm38	100	61.905	ENSIPUG00000019349	-	100	61.905	Ictalurus_punctatus
ENSRNOG00000006420	Rbm38	89	53.814	ENSKMAG00000012402	rbm38	98	53.814	Kryptolebias_marmoratus
ENSRNOG00000006420	Rbm38	94	66.087	ENSLBEG00000016163	RBM38	97	66.667	Labrus_bergylta
ENSRNOG00000006420	Rbm38	89	59.227	ENSLBEG00000018878	rbm38	91	59.227	Labrus_bergylta
ENSRNOG00000006420	Rbm38	92	69.912	ENSLOCG00000003456	rbm38	95	69.912	Lepisosteus_oculatus
ENSRNOG00000006420	Rbm38	97	93.534	ENSMFAG00000043808	RBM38	97	93.534	Macaca_fascicularis
ENSRNOG00000006420	Rbm38	100	93.305	ENSMMUG00000031391	RBM38	100	95.041	Macaca_mulatta
ENSRNOG00000006420	Rbm38	100	93.305	ENSMNEG00000034683	RBM38	100	95.041	Macaca_nemestrina
ENSRNOG00000006420	Rbm38	94	62.810	ENSMAMG00000020499	RBM38	97	64.050	Mastacembelus_armatus
ENSRNOG00000006420	Rbm38	89	58.798	ENSMAMG00000024135	rbm38	91	58.798	Mastacembelus_armatus
ENSRNOG00000006420	Rbm38	89	58.798	ENSMZEG00005026036	rbm38	91	58.798	Maylandia_zebra
ENSRNOG00000006420	Rbm38	94	67.532	ENSMZEG00005000849	-	97	67.100	Maylandia_zebra
ENSRNOG00000006420	Rbm38	100	97.046	ENSMAUG00000021211	Rbm38	100	97.046	Mesocricetus_auratus
ENSRNOG00000006420	Rbm38	91	94.907	ENSMICG00000038011	RBM38	100	94.907	Microcebus_murinus
ENSRNOG00000006420	Rbm38	100	97.046	ENSMOCG00000008715	Rbm38	100	97.046	Microtus_ochrogaster
ENSRNOG00000006420	Rbm38	94	67.105	ENSMMOG00000020051	-	96	67.249	Mola_mola
ENSRNOG00000006420	Rbm38	100	76.151	ENSMODG00000016458	RBM38	100	76.151	Monodelphis_domestica
ENSRNOG00000006420	Rbm38	80	71.649	ENSMALG00000004680	RBM38	72	71.649	Monopterus_albus
ENSRNOG00000006420	Rbm38	64	71.613	ENSMALG00000022327	rbm38	93	57.522	Monopterus_albus
ENSRNOG00000006420	Rbm38	100	97.468	MGP_CAROLIEiJ_G0024745	Rbm38	100	97.468	Mus_caroli
ENSRNOG00000006420	Rbm38	100	97.890	ENSMUSG00000027510	Rbm38	100	97.890	Mus_musculus
ENSRNOG00000006420	Rbm38	100	96.624	MGP_PahariEiJ_G0026186	Rbm38	100	96.624	Mus_pahari
ENSRNOG00000006420	Rbm38	100	97.468	MGP_SPRETEiJ_G0025665	Rbm38	100	97.468	Mus_spretus
ENSRNOG00000006420	Rbm38	78	95.676	ENSMPUG00000006518	RBM38	93	95.722	Mustela_putorius_furo
ENSRNOG00000006420	Rbm38	91	91.204	ENSMLUG00000011140	RBM38	100	91.204	Myotis_lucifugus
ENSRNOG00000006420	Rbm38	94	64.198	ENSNBRG00000022545	-	97	64.344	Neolamprologus_brichardi
ENSRNOG00000006420	Rbm38	100	58.943	ENSNBRG00000022685	rbm38	99	58.943	Neolamprologus_brichardi
ENSRNOG00000006420	Rbm38	57	76.087	ENSMEUG00000005475	-	100	72.464	Notamacropus_eugenii
ENSRNOG00000006420	Rbm38	100	93.724	ENSODEG00000007980	RBM38	100	93.724	Octodon_degus
ENSRNOG00000006420	Rbm38	89	59.052	ENSONIG00000017073	rbm38	93	59.052	Oreochromis_niloticus
ENSRNOG00000006420	Rbm38	93	64.050	ENSONIG00000020324	-	97	64.198	Oreochromis_niloticus
ENSRNOG00000006420	Rbm38	91	78.704	ENSOANG00000009259	RBM38	83	78.704	Ornithorhynchus_anatinus
ENSRNOG00000006420	Rbm38	89	55.983	ENSORLG00000012154	rbm38	91	55.983	Oryzias_latipes
ENSRNOG00000006420	Rbm38	89	64.378	ENSORLG00000027180	-	92	65.812	Oryzias_latipes
ENSRNOG00000006420	Rbm38	89	64.378	ENSORLG00020020751	-	92	65.812	Oryzias_latipes_hni
ENSRNOG00000006420	Rbm38	89	57.265	ENSORLG00020017871	rbm38	91	57.265	Oryzias_latipes_hni
ENSRNOG00000006420	Rbm38	90	59.633	ENSORLG00015012606	rbm38	90	59.633	Oryzias_latipes_hsok
ENSRNOG00000006420	Rbm38	89	63.793	ENSORLG00015017040	-	92	66.094	Oryzias_latipes_hsok
ENSRNOG00000006420	Rbm38	89	64.502	ENSOMEG00000023912	-	92	65.368	Oryzias_melastigma
ENSRNOG00000006420	Rbm38	83	62.376	ENSOMEG00000006805	rbm38	79	62.376	Oryzias_melastigma
ENSRNOG00000006420	Rbm38	100	92.500	ENSOGAG00000029136	RBM38	100	92.500	Otolemur_garnettii
ENSRNOG00000006420	Rbm38	100	92.050	ENSPPRG00000009507	RBM38	100	93.388	Panthera_pardus
ENSRNOG00000006420	Rbm38	54	96.094	ENSPTRG00000045845	-	70	96.094	Pan_troglodytes
ENSRNOG00000006420	Rbm38	88	92.308	ENSPTRG00000013661	RBM38	100	95.041	Pan_troglodytes
ENSRNOG00000006420	Rbm38	100	93.305	ENSPANG00000020919	-	100	95.041	Papio_anubis
ENSRNOG00000006420	Rbm38	98	72.996	ENSPANG00000033127	-	99	72.689	Papio_anubis
ENSRNOG00000006420	Rbm38	89	67.130	ENSPKIG00000018122	-	100	88.034	Paramormyrops_kingsleyae
ENSRNOG00000006420	Rbm38	96	60.484	ENSPKIG00000025417	rbm38	99	60.887	Paramormyrops_kingsleyae
ENSRNOG00000006420	Rbm38	97	77.056	ENSPSIG00000011649	RBM38	97	77.056	Pelodiscus_sinensis
ENSRNOG00000006420	Rbm38	91	56.303	ENSPMGG00000011343	rbm38	94	57.563	Periophthalmus_magnuspinnatus
ENSRNOG00000006420	Rbm38	92	58.996	ENSPMGG00000017094	-	94	62.083	Periophthalmus_magnuspinnatus
ENSRNOG00000006420	Rbm38	100	76.569	ENSPCIG00000013648	RBM38	100	76.569	Phascolarctos_cinereus
ENSRNOG00000006420	Rbm38	89	55.696	ENSPFOG00000011658	rbm38	91	58.974	Poecilia_formosa
ENSRNOG00000006420	Rbm38	89	56.540	ENSPLAG00000005218	rbm38	91	58.974	Poecilia_latipinna
ENSRNOG00000006420	Rbm38	89	65.957	ENSPLAG00000002500	-	92	67.234	Poecilia_latipinna
ENSRNOG00000006420	Rbm38	89	55.696	ENSPMEG00000015770	rbm38	91	58.974	Poecilia_mexicana
ENSRNOG00000006420	Rbm38	89	56.118	ENSPREG00000007398	rbm38	91	59.402	Poecilia_reticulata
ENSRNOG00000006420	Rbm38	100	93.333	ENSPCOG00000026201	RBM38	100	94.262	Propithecus_coquereli
ENSRNOG00000006420	Rbm38	100	64.435	ENSPVAG00000006457	RBM38	100	64.435	Pteropus_vampyrus
ENSRNOG00000006420	Rbm38	89	69.863	ENSPNYG00000019727	-	100	88.034	Pundamilia_nyererei
ENSRNOG00000006420	Rbm38	100	57.202	ENSPNYG00000021373	rbm38	100	58.776	Pundamilia_nyererei
ENSRNOG00000006420	Rbm38	85	65.258	ENSPNAG00000010596	rbm38	88	65.258	Pygocentrus_nattereri
ENSRNOG00000006420	Rbm38	92	65.801	ENSPNAG00000015123	-	96	77.273	Pygocentrus_nattereri
ENSRNOG00000006420	Rbm38	100	77.406	ENSRROG00000036388	-	100	77.406	Rhinopithecus_roxellana
ENSRNOG00000006420	Rbm38	91	93.981	ENSSBOG00000031053	RBM38	100	97.196	Saimiri_boliviensis_boliviensis
ENSRNOG00000006420	Rbm38	94	64.935	ENSSFOG00015004453	rbm38	92	69.091	Scleropages_formosus
ENSRNOG00000006420	Rbm38	89	60.515	ENSSDUG00000022611	rbm38	91	60.515	Seriola_dumerili
ENSRNOG00000006420	Rbm38	94	62.295	ENSSDUG00000021082	RBM38	92	65.086	Seriola_dumerili
ENSRNOG00000006420	Rbm38	94	62.295	ENSSLDG00000011778	RBM38	92	65.086	Seriola_lalandi_dorsalis
ENSRNOG00000006420	Rbm38	97	61.017	ENSSLDG00000010845	rbm38	97	61.017	Seriola_lalandi_dorsalis
ENSRNOG00000006420	Rbm38	94	65.333	ENSSPAG00000020989	RBM38	91	66.972	Stegastes_partitus
ENSRNOG00000006420	Rbm38	89	59.227	ENSSPAG00000011113	rbm38	91	59.227	Stegastes_partitus
ENSRNOG00000006420	Rbm38	100	92.469	ENSSSCG00000007504	RBM38	100	92.469	Sus_scrofa
ENSRNOG00000006420	Rbm38	94	63.525	ENSTRUG00000019869	-	92	66.094	Takifugu_rubripes
ENSRNOG00000006420	Rbm38	89	55.895	ENSTRUG00000024954	rbm38	91	57.205	Takifugu_rubripes
ENSRNOG00000006420	Rbm38	89	69.683	ENSTNIG00000007093	-	97	70.270	Tetraodon_nigroviridis
ENSRNOG00000006420	Rbm38	50	83.898	ENSTBEG00000001689	-	50	83.898	Tupaia_belangeri
ENSRNOG00000006420	Rbm38	100	92.469	ENSUAMG00000019780	RBM38	100	92.469	Ursus_americanus
ENSRNOG00000006420	Rbm38	100	91.632	ENSVVUG00000017246	RBM38	100	91.632	Vulpes_vulpes
ENSRNOG00000006420	Rbm38	92	72.889	ENSXETG00000011268	rbm38	100	73.778	Xenopus_tropicalis
ENSRNOG00000006420	Rbm38	54	77.444	ENSXCOG00000017324	-	60	77.444	Xiphophorus_couchianus
ENSRNOG00000006420	Rbm38	89	58.051	ENSXMAG00000023662	rbm38	91	59.227	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	21873635.	IBA	Process
GO:0006977	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	-	ISO	Process
GO:0006978	DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator	-	ISO	Process
GO:0007050	cell cycle arrest	-	ISO	Process
GO:0007050	cell cycle arrest	-	ISO	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0010830	regulation of myotube differentiation	-	IEA	Process
GO:0010830	regulation of myotube differentiation	-	ISO	Process
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	-	ISO	Process
GO:0070935	3'-UTR-mediated mRNA stabilization	21873635.	IBA	Process
GO:0070935	3'-UTR-mediated mRNA stabilization	-	ISO	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component