EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006576 (Gene tree)
Gene ID: 362426
Gene Symbol: Bms1
Alias: Bms1l|LOC362426
Full Name: BMS1 ribosome biogenesis factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 38265 bases
Position: chr4:150433570-150471834
Accession: 1308043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000068043	AARP2CN	PF08142.12	3.2e-30	1	1
ENSRNOP00000008741	AARP2CN	PF08142.12	3.4e-30	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000076557	-	3371	-	ENSRNOP00000068043	1046 (aa)	-	A0A096MJ94
ENSRNOT00000008741	-	3477	-	ENSRNOP00000008741	1064 (aa)	-	E9PTV4
ENSRNOT00000076679	-	657	-	ENSRNOP00000068374	128 (aa)	-	A0A096MK44

Gene Model

Click here to download ENSRNOG00000006576's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006576's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006576	Bms1	100	83.381	ENSG00000165733	BMS1	82	82.436	Homo_sapiens
ENSRNOG00000006576	Bms1	64	71.280	ENSAPOG00000002296	bms1	78	57.941	Acanthochromis_polyacanthus
ENSRNOG00000006576	Bms1	100	82.638	ENSAMEG00000016834	BMS1	82	81.792	Ailuropoda_melanoleuca
ENSRNOG00000006576	Bms1	78	78.747	ENSACIG00000002588	bms1	70	76.000	Amphilophus_citrinellus
ENSRNOG00000006576	Bms1	81	69.792	ENSAOCG00000018088	bms1	80	60.324	Amphiprion_ocellaris
ENSRNOG00000006576	Bms1	78	70.112	ENSAPEG00000014673	bms1	80	60.189	Amphiprion_percula
ENSRNOG00000006576	Bms1	100	70.318	ENSAPLG00000003759	BMS1	85	70.311	Anas_platyrhynchos
ENSRNOG00000006576	Bms1	100	67.985	ENSACAG00000004537	-	82	67.007	Anolis_carolinensis
ENSRNOG00000006576	Bms1	100	82.241	ENSANAG00000023432	BMS1	82	82.436	Aotus_nancymaae
ENSRNOG00000006576	Bms1	86	67.653	ENSACLG00000001294	bms1	80	60.795	Astatotilapia_calliptera
ENSRNOG00000006576	Bms1	79	71.789	ENSAMXG00000011236	bms1	75	65.848	Astyanax_mexicanus
ENSRNOG00000006576	Bms1	100	81.991	ENSBTAG00000012878	BMS1	82	81.904	Bos_taurus
ENSRNOG00000006576	Bms1	100	82.051	ENSCJAG00000021705	BMS1	82	82.453	Callithrix_jacchus
ENSRNOG00000006576	Bms1	100	81.654	ENSCAFG00000007114	BMS1	82	81.844	Canis_familiaris
ENSRNOG00000006576	Bms1	100	81.654	ENSCAFG00020025282	BMS1	82	81.844	Canis_lupus_dingo
ENSRNOG00000006576	Bms1	100	81.973	ENSCHIG00000023251	BMS1	82	81.792	Capra_hircus
ENSRNOG00000006576	Bms1	97	81.845	ENSCAPG00000008652	BMS1	81	81.028	Cavia_aperea
ENSRNOG00000006576	Bms1	100	83.588	ENSCPOG00000000502	BMS1	82	82.729	Cavia_porcellus
ENSRNOG00000006576	Bms1	100	66.572	ENSCCAG00000024969	-	82	66.885	Cebus_capucinus
ENSRNOG00000006576	Bms1	100	82.798	ENSCATG00000030625	-	89	82.431	Cercocebus_atys
ENSRNOG00000006576	Bms1	99	61.605	ENSCATG00000008695	-	87	60.381	Cercocebus_atys
ENSRNOG00000006576	Bms1	100	83.492	ENSCLAG00000002446	BMS1	82	83.444	Chinchilla_lanigera
ENSRNOG00000006576	Bms1	100	83.081	ENSCSAG00000011118	BMS1	82	82.420	Chlorocebus_sabaeus
ENSRNOG00000006576	Bms1	100	80.000	ENSCHOG00000011055	BMS1	82	79.699	Choloepus_hoffmanni
ENSRNOG00000006576	Bms1	99	73.001	ENSCPBG00000025581	BMS1	82	72.331	Chrysemys_picta_bellii
ENSRNOG00000006576	Bms1	76	58.722	ENSCING00000003181	-	77	58.722	Ciona_intestinalis
ENSRNOG00000006576	Bms1	64	63.874	ENSCSAVG00000004113	-	66	63.874	Ciona_savignyi
ENSRNOG00000006576	Bms1	100	84.330	ENSCANG00000011609	BMS1	82	82.720	Colobus_angolensis_palliatus
ENSRNOG00000006576	Bms1	100	89.839	ENSCGRG00001019461	Bms1	82	89.459	Cricetulus_griseus_chok1gshd
ENSRNOG00000006576	Bms1	100	89.839	ENSCGRG00000009016	Bms1	82	89.046	Cricetulus_griseus_crigri
ENSRNOG00000006576	Bms1	82	69.689	ENSCVAG00000008371	bms1	80	60.153	Cyprinodon_variegatus
ENSRNOG00000006576	Bms1	87	66.585	ENSDARG00000054154	bms1	92	66.085	Danio_rerio
ENSRNOG00000006576	Bms1	100	81.492	ENSDNOG00000015761	BMS1	82	80.453	Dasypus_novemcinctus
ENSRNOG00000006576	Bms1	100	82.716	ENSDORG00000002982	Bms1	82	82.436	Dipodomys_ordii
ENSRNOG00000006576	Bms1	75	59.947	FBgn0036686	CG7728	76	58.519	Drosophila_melanogaster
ENSRNOG00000006576	Bms1	94	74.848	ENSETEG00000009554	BMS1	81	74.747	Echinops_telfairi
ENSRNOG00000006576	Bms1	100	81.559	ENSEASG00005006894	BMS1	82	81.947	Equus_asinus_asinus
ENSRNOG00000006576	Bms1	100	82.605	ENSECAG00000001358	BMS1	82	82.042	Equus_caballus
ENSRNOG00000006576	Bms1	88	66.106	ENSELUG00000001756	bms1	73	78.711	Esox_lucius
ENSRNOG00000006576	Bms1	100	83.981	ENSFCAG00000011220	BMS1	82	82.941	Felis_catus
ENSRNOG00000006576	Bms1	100	70.285	ENSFALG00000006882	BMS1	82	70.463	Ficedula_albicollis
ENSRNOG00000006576	Bms1	100	80.989	ENSFDAG00000001422	BMS1	82	80.398	Fukomys_damarensis
ENSRNOG00000006576	Bms1	83	69.072	ENSFHEG00000003367	bms1	79	66.667	Fundulus_heteroclitus
ENSRNOG00000006576	Bms1	88	67.708	ENSGMOG00000000718	bms1	76	66.923	Gadus_morhua
ENSRNOG00000006576	Bms1	100	70.461	ENSGALG00000002624	BMS1	82	70.638	Gallus_gallus
ENSRNOG00000006576	Bms1	88	64.951	ENSGACG00000015334	bms1	70	67.436	Gasterosteus_aculeatus
ENSRNOG00000006576	Bms1	100	72.805	ENSGAGG00000003467	BMS1	82	71.857	Gopherus_agassizii
ENSRNOG00000006576	Bms1	85	68.010	ENSHBUG00000022628	bms1	80	60.874	Haplochromis_burtoni
ENSRNOG00000006576	Bms1	100	80.420	ENSHGLG00000000477	BMS1	82	79.451	Heterocephalus_glaber_female
ENSRNOG00000006576	Bms1	100	80.516	ENSHGLG00100002176	BMS1	82	79.545	Heterocephalus_glaber_male
ENSRNOG00000006576	Bms1	86	67.959	ENSHCOG00000017604	bms1	79	66.602	Hippocampus_comes
ENSRNOG00000006576	Bms1	97	77.512	ENSIPUG00000017855	bms1	82	59.890	Ictalurus_punctatus
ENSRNOG00000006576	Bms1	100	82.795	ENSSTOG00000015063	BMS1	82	83.745	Ictidomys_tridecemlineatus
ENSRNOG00000006576	Bms1	100	82.403	ENSJJAG00000017328	Bms1	82	83.286	Jaculus_jaculus
ENSRNOG00000006576	Bms1	71	63.971	ENSKMAG00000021982	bms1	93	66.797	Kryptolebias_marmoratus
ENSRNOG00000006576	Bms1	78	71.330	ENSLBEG00000028208	bms1	80	60.188	Labrus_bergylta
ENSRNOG00000006576	Bms1	100	58.256	ENSLACG00000001600	BMS1	82	58.557	Latimeria_chalumnae
ENSRNOG00000006576	Bms1	81	74.777	ENSLOCG00000012914	bms1	81	61.820	Lepisosteus_oculatus
ENSRNOG00000006576	Bms1	100	79.886	ENSLAFG00000006250	BMS1	82	79.317	Loxodonta_africana
ENSRNOG00000006576	Bms1	78	89.226	ENSMFAG00000037771	BMS1	77	89.226	Macaca_fascicularis
ENSRNOG00000006576	Bms1	99	70.672	ENSMMUG00000007426	-	90	69.943	Macaca_mulatta
ENSRNOG00000006576	Bms1	99	64.593	ENSMLEG00000029084	-	93	64.129	Mandrillus_leucophaeus
ENSRNOG00000006576	Bms1	99	62.406	ENSMAMG00000020855	bms1	79	64.733	Mastacembelus_armatus
ENSRNOG00000006576	Bms1	86	67.456	ENSMZEG00005005663	bms1	80	60.701	Maylandia_zebra
ENSRNOG00000006576	Bms1	94	69.940	ENSMGAG00000001170	BMS1	81	68.861	Meleagris_gallopavo
ENSRNOG00000006576	Bms1	100	89.534	ENSMAUG00000002195	Bms1	82	89.734	Mesocricetus_auratus
ENSRNOG00000006576	Bms1	100	81.214	ENSMICG00000009977	BMS1	82	82.068	Microcebus_murinus
ENSRNOG00000006576	Bms1	100	88.487	ENSMOCG00000002038	Bms1	82	88.297	Microtus_ochrogaster
ENSRNOG00000006576	Bms1	82	69.870	ENSMMOG00000000977	bms1	79	65.957	Mola_mola
ENSRNOG00000006576	Bms1	100	76.873	ENSMODG00000001177	BMS1	82	76.757	Monodelphis_domestica
ENSRNOG00000006576	Bms1	86	73.409	ENSMALG00000009680	bms1	80	60.019	Monopterus_albus
ENSRNOG00000006576	Bms1	82	96.845	MGP_CAROLIEiJ_G0028785	-	81	96.845	Mus_caroli
ENSRNOG00000006576	Bms1	100	91.238	ENSMUSG00000030138	Bms1	82	91.238	Mus_musculus
ENSRNOG00000006576	Bms1	100	92.844	MGP_PahariEiJ_G0022539	Bms1	82	92.366	Mus_pahari
ENSRNOG00000006576	Bms1	100	91.429	MGP_SPRETEiJ_G0029816	Bms1	82	91.238	Mus_spretus
ENSRNOG00000006576	Bms1	100	83.081	ENSMPUG00000017276	BMS1	82	81.759	Mustela_putorius_furo
ENSRNOG00000006576	Bms1	100	81.214	ENSMLUG00000003260	BMS1	82	80.189	Myotis_lucifugus
ENSRNOG00000006576	Bms1	94	81.769	ENSNGAG00000015258	Bms1	79	72.736	Nannospalax_galili
ENSRNOG00000006576	Bms1	100	82.906	ENSNLEG00000015791	BMS1	91	81.775	Nomascus_leucogenys
ENSRNOG00000006576	Bms1	77	93.095	ENSOPRG00000005195	BMS1	63	93.095	Ochotona_princeps
ENSRNOG00000006576	Bms1	100	82.252	ENSODEG00000005554	BMS1	82	81.629	Octodon_degus
ENSRNOG00000006576	Bms1	88	68.861	ENSONIG00000007227	bms1	80	61.180	Oreochromis_niloticus
ENSRNOG00000006576	Bms1	100	74.621	ENSOANG00000000662	-	82	74.245	Ornithorhynchus_anatinus
ENSRNOG00000006576	Bms1	100	82.510	ENSOCUG00000005354	BMS1	82	81.664	Oryctolagus_cuniculus
ENSRNOG00000006576	Bms1	85	70.312	ENSORLG00000014655	bms1	79	66.797	Oryzias_latipes
ENSRNOG00000006576	Bms1	85	68.974	ENSORLG00020016246	bms1	81	66.990	Oryzias_latipes_hni
ENSRNOG00000006576	Bms1	78	73.853	ENSOMEG00000015042	bms1	79	67.442	Oryzias_melastigma
ENSRNOG00000006576	Bms1	100	81.964	ENSOGAG00000006511	BMS1	82	82.892	Otolemur_garnettii
ENSRNOG00000006576	Bms1	100	81.758	ENSOARG00000003900	BMS1	82	81.947	Ovis_aries
ENSRNOG00000006576	Bms1	100	83.666	ENSPPAG00000027837	BMS1	83	82.906	Pan_paniscus
ENSRNOG00000006576	Bms1	100	84.076	ENSPPRG00000001311	BMS1	82	83.035	Panthera_pardus
ENSRNOG00000006576	Bms1	100	83.602	ENSPTIG00000009652	BMS1	84	82.752	Panthera_tigris_altaica
ENSRNOG00000006576	Bms1	100	83.476	ENSPTRG00000002441	BMS1	90	79.548	Pan_troglodytes
ENSRNOG00000006576	Bms1	100	72.015	ENSPSIG00000006481	BMS1	82	71.747	Pelodiscus_sinensis
ENSRNOG00000006576	Bms1	97	87.635	ENSPEMG00000022467	Bms1	83	86.359	Peromyscus_maniculatus_bairdii
ENSRNOG00000006576	Bms1	94	89.933	ENSPCIG00000001339	BMS1	79	93.443	Phascolarctos_cinereus
ENSRNOG00000006576	Bms1	83	66.496	ENSPFOG00000015180	bms1	78	61.168	Poecilia_formosa
ENSRNOG00000006576	Bms1	82	68.312	ENSPMEG00000023176	bms1	75	65.511	Poecilia_mexicana
ENSRNOG00000006576	Bms1	75	72.127	ENSPREG00000002695	bms1	78	65.105	Poecilia_reticulata
ENSRNOG00000006576	Bms1	74	81.098	ENSPPYG00000002836	-	99	80.204	Pongo_abelii
ENSRNOG00000006576	Bms1	73	92.500	ENSPCAG00000014528	BMS1	59	92.500	Procavia_capensis
ENSRNOG00000006576	Bms1	94	78.408	ENSPCOG00000023834	-	81	78.239	Propithecus_coquereli
ENSRNOG00000006576	Bms1	100	80.880	ENSPVAG00000000725	BMS1	82	79.677	Pteropus_vampyrus
ENSRNOG00000006576	Bms1	99	61.327	ENSPNAG00000000676	bms1	81	61.269	Pygocentrus_nattereri
ENSRNOG00000006576	Bms1	100	81.576	ENSRROG00000040101	BMS1	90	80.359	Rhinopithecus_roxellana
ENSRNOG00000006576	Bms1	70	44.910	YPL217C	-	64	46.089	Saccharomyces_cerevisiae
ENSRNOG00000006576	Bms1	100	83.096	ENSSBOG00000035778	BMS1	82	82.736	Saimiri_boliviensis_boliviensis
ENSRNOG00000006576	Bms1	100	74.766	ENSSHAG00000005062	BMS1	82	75.421	Sarcophilus_harrisii
ENSRNOG00000006576	Bms1	100	60.243	ENSSFOG00015022313	bms1	81	59.355	Scleropages_formosus
ENSRNOG00000006576	Bms1	87	68.638	ENSSMAG00000019966	bms1	81	59.314	Scophthalmus_maximus
ENSRNOG00000006576	Bms1	86	70.130	ENSSDUG00000016875	bms1	86	64.165	Seriola_dumerili
ENSRNOG00000006576	Bms1	86	70.649	ENSSLDG00000015199	bms1	81	58.807	Seriola_lalandi_dorsalis
ENSRNOG00000006576	Bms1	75	68.394	ENSSARG00000014407	BMS1	89	67.282	Sorex_araneus
ENSRNOG00000006576	Bms1	100	70.748	ENSSPUG00000014454	BMS1	82	70.185	Sphenodon_punctatus
ENSRNOG00000006576	Bms1	100	82.526	ENSSSCG00000010198	BMS1	85	82.514	Sus_scrofa
ENSRNOG00000006576	Bms1	99	70.308	ENSTGUG00000006302	-	82	70.000	Taeniopygia_guttata
ENSRNOG00000006576	Bms1	90	63.618	ENSTRUG00000008028	bms1	77	62.840	Takifugu_rubripes
ENSRNOG00000006576	Bms1	99	57.810	ENSTNIG00000006216	bms1	71	65.404	Tetraodon_nigroviridis
ENSRNOG00000006576	Bms1	62	88.926	ENSTBEG00000001673	-	54	87.948	Tupaia_belangeri
ENSRNOG00000006576	Bms1	100	79.735	ENSTTRG00000007983	BMS1	82	79.717	Tursiops_truncatus
ENSRNOG00000006576	Bms1	100	83.080	ENSUAMG00000023996	BMS1	82	82.136	Ursus_americanus
ENSRNOG00000006576	Bms1	100	83.080	ENSUMAG00000016523	BMS1	82	82.136	Ursus_maritimus
ENSRNOG00000006576	Bms1	86	74.311	ENSVPAG00000007477	BMS1	73	92.609	Vicugna_pacos
ENSRNOG00000006576	Bms1	100	81.749	ENSVVUG00000021305	BMS1	82	81.939	Vulpes_vulpes
ENSRNOG00000006576	Bms1	100	62.357	ENSXETG00000008158	bms1	91	70.270	Xenopus_tropicalis
ENSRNOG00000006576	Bms1	83	67.008	ENSXCOG00000000506	bms1	93	75.879	Xiphophorus_couchianus
ENSRNOG00000006576	Bms1	84	66.332	ENSXMAG00000014236	bms1	79	64.639	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0034511	U3 snoRNA binding	21873635.	IBA	Function