EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006582 (Gene tree)
Gene ID: 259271
Gene Symbol: Aptx
Alias: -
Full Name: aprataxin
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 20951 bases
Position: chr5:56987909-57008859
Accession: 628740
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000046400	DcpS_C	PF11969.8	2.1e-34	1	1
ENSRNOP00000072443	DcpS_C	PF11969.8	2.1e-34	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000046463	-	1413	XM_006238026	ENSRNOP00000046400	329 (aa)	-	Q8K4H4
ENSRNOT00000090891	-	1159	XM_006238027	ENSRNOP00000072443	329 (aa)	XP_006238089	Q8K4H4

Gene Model

Click here to download ENSRNOG00000006582's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006582's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006582	Aptx	99	82.006	ENSG00000137074	APTX	94	92.179	Homo_sapiens
ENSRNOG00000006582	Aptx	99	61.791	ENSAPOG00000008785	aptx	99	61.791	Acanthochromis_polyacanthus
ENSRNOG00000006582	Aptx	99	80.531	ENSAMEG00000007648	APTX	95	80.531	Ailuropoda_melanoleuca
ENSRNOG00000006582	Aptx	99	57.927	ENSACIG00000002035	aptx	99	57.927	Amphilophus_citrinellus
ENSRNOG00000006582	Aptx	99	62.090	ENSAOCG00000000634	aptx	99	62.090	Amphiprion_ocellaris
ENSRNOG00000006582	Aptx	99	62.090	ENSAPEG00000017253	aptx	99	62.090	Amphiprion_percula
ENSRNOG00000006582	Aptx	99	61.791	ENSATEG00000017383	aptx	99	61.791	Anabas_testudineus
ENSRNOG00000006582	Aptx	89	59.502	ENSAPLG00000015645	APTX	99	59.502	Anas_platyrhynchos
ENSRNOG00000006582	Aptx	99	60.580	ENSACAG00000003581	APTX	95	61.159	Anolis_carolinensis
ENSRNOG00000006582	Aptx	99	81.416	ENSANAG00000030160	APTX	99	78.550	Aotus_nancymaae
ENSRNOG00000006582	Aptx	99	61.243	ENSACLG00000018887	aptx	100	61.243	Astatotilapia_calliptera
ENSRNOG00000006582	Aptx	99	58.806	ENSAMXG00000039899	aptx	99	58.806	Astyanax_mexicanus
ENSRNOG00000006582	Aptx	99	79.706	ENSBTAG00000013947	APTX	98	79.706	Bos_taurus
ENSRNOG00000006582	Aptx	99	79.941	ENSCJAG00000007940	APTX	99	79.941	Callithrix_jacchus
ENSRNOG00000006582	Aptx	99	80.531	ENSCAFG00000001812	APTX	99	80.531	Canis_familiaris
ENSRNOG00000006582	Aptx	99	80.531	ENSCAFG00020015598	APTX	99	80.531	Canis_lupus_dingo
ENSRNOG00000006582	Aptx	99	80.826	ENSCHIG00000012896	APTX	99	80.826	Capra_hircus
ENSRNOG00000006582	Aptx	99	81.711	ENSTSYG00000003041	APTX	99	81.711	Carlito_syrichta
ENSRNOG00000006582	Aptx	63	91.975	ENSCAPG00000013470	APTX	99	91.975	Cavia_aperea
ENSRNOG00000006582	Aptx	99	79.941	ENSCPOG00000005975	APTX	99	91.758	Cavia_porcellus
ENSRNOG00000006582	Aptx	99	80.531	ENSCCAG00000036783	APTX	99	80.531	Cebus_capucinus
ENSRNOG00000006582	Aptx	99	81.711	ENSCATG00000042639	APTX	96	81.711	Cercocebus_atys
ENSRNOG00000006582	Aptx	99	81.791	ENSCLAG00000012185	APTX	99	91.758	Chinchilla_lanigera
ENSRNOG00000006582	Aptx	99	82.006	ENSCSAG00000009885	APTX	95	82.006	Chlorocebus_sabaeus
ENSRNOG00000006582	Aptx	99	64.000	ENSCPBG00000023973	APTX	97	64.571	Chrysemys_picta_bellii
ENSRNOG00000006582	Aptx	97	37.604	ENSCING00000008741	-	94	37.604	Ciona_intestinalis
ENSRNOG00000006582	Aptx	98	40.111	ENSCSAVG00000008038	-	97	40.111	Ciona_savignyi
ENSRNOG00000006582	Aptx	99	80.531	ENSCANG00000037253	APTX	99	80.531	Colobus_angolensis_palliatus
ENSRNOG00000006582	Aptx	99	86.527	ENSCGRG00001000705	Aptx	99	93.478	Cricetulus_griseus_chok1gshd
ENSRNOG00000006582	Aptx	99	86.136	ENSCGRG00000014159	Aptx	99	93.478	Cricetulus_griseus_crigri
ENSRNOG00000006582	Aptx	99	57.576	ENSCSEG00000009549	aptx	99	57.576	Cynoglossus_semilaevis
ENSRNOG00000006582	Aptx	99	59.104	ENSCVAG00000011942	aptx	99	59.104	Cyprinodon_variegatus
ENSRNOG00000006582	Aptx	99	58.485	ENSDARG00000027143	aptx	99	58.055	Danio_rerio
ENSRNOG00000006582	Aptx	99	81.121	ENSDNOG00000018498	APTX	95	81.121	Dasypus_novemcinctus
ENSRNOG00000006582	Aptx	99	83.232	ENSDORG00000002139	Aptx	99	91.758	Dipodomys_ordii
ENSRNOG00000006582	Aptx	54	40.571	FBgn0038704	CG5316	87	46.721	Drosophila_melanogaster
ENSRNOG00000006582	Aptx	81	78.058	ENSETEG00000012459	APTX	78	78.777	Echinops_telfairi
ENSRNOG00000006582	Aptx	99	45.821	ENSEBUG00000013914	aptx	95	45.821	Eptatretus_burgeri
ENSRNOG00000006582	Aptx	99	81.121	ENSEASG00005004566	APTX	99	81.121	Equus_asinus_asinus
ENSRNOG00000006582	Aptx	99	81.416	ENSECAG00000012674	APTX	92	81.416	Equus_caballus
ENSRNOG00000006582	Aptx	84	78.351	ENSEEUG00000010693	APTX	95	78.351	Erinaceus_europaeus
ENSRNOG00000006582	Aptx	99	80.531	ENSFCAG00000008728	APTX	99	80.531	Felis_catus
ENSRNOG00000006582	Aptx	99	63.158	ENSFALG00000001230	APTX	99	63.158	Ficedula_albicollis
ENSRNOG00000006582	Aptx	99	81.098	ENSFDAG00000013752	APTX	99	89.011	Fukomys_damarensis
ENSRNOG00000006582	Aptx	81	55.245	ENSFHEG00000021328	aptx	73	55.245	Fundulus_heteroclitus
ENSRNOG00000006582	Aptx	99	57.658	ENSGMOG00000012505	aptx	99	57.658	Gadus_morhua
ENSRNOG00000006582	Aptx	99	59.659	ENSGALG00000001954	APTX	99	60.857	Gallus_gallus
ENSRNOG00000006582	Aptx	99	59.517	ENSGAFG00000005086	aptx	99	59.517	Gambusia_affinis
ENSRNOG00000006582	Aptx	99	59.819	ENSGACG00000017887	aptx	99	59.819	Gasterosteus_aculeatus
ENSRNOG00000006582	Aptx	99	64.000	ENSGAGG00000013230	APTX	99	64.857	Gopherus_agassizii
ENSRNOG00000006582	Aptx	85	81.100	ENSGGOG00000014232	APTX	95	74.828	Gorilla_gorilla
ENSRNOG00000006582	Aptx	99	61.243	ENSHBUG00000021058	aptx	100	61.243	Haplochromis_burtoni
ENSRNOG00000006582	Aptx	99	80.723	ENSHGLG00000015093	APTX	99	87.912	Heterocephalus_glaber_female
ENSRNOG00000006582	Aptx	99	80.723	ENSHGLG00100013482	APTX	99	87.912	Heterocephalus_glaber_male
ENSRNOG00000006582	Aptx	99	59.574	ENSHCOG00000018216	aptx	96	59.574	Hippocampus_comes
ENSRNOG00000006582	Aptx	99	59.226	ENSIPUG00000017548	aptx	99	59.226	Ictalurus_punctatus
ENSRNOG00000006582	Aptx	99	81.024	ENSSTOG00000005185	APTX	99	90.110	Ictidomys_tridecemlineatus
ENSRNOG00000006582	Aptx	99	83.384	ENSJJAG00000015653	Aptx	99	83.384	Jaculus_jaculus
ENSRNOG00000006582	Aptx	99	58.580	ENSKMAG00000000117	aptx	99	58.580	Kryptolebias_marmoratus
ENSRNOG00000006582	Aptx	99	59.475	ENSLBEG00000015353	aptx	99	59.475	Labrus_bergylta
ENSRNOG00000006582	Aptx	99	52.113	ENSLBEG00000021489	APTX	99	52.113	Labrus_bergylta
ENSRNOG00000006582	Aptx	99	59.091	ENSLACG00000003376	APTX	99	60.511	Latimeria_chalumnae
ENSRNOG00000006582	Aptx	99	60.000	ENSLOCG00000011556	aptx	95	60.000	Lepisosteus_oculatus
ENSRNOG00000006582	Aptx	99	82.301	ENSLAFG00000005665	APTX	99	82.301	Loxodonta_africana
ENSRNOG00000006582	Aptx	99	82.006	ENSMFAG00000043141	APTX	96	82.006	Macaca_fascicularis
ENSRNOG00000006582	Aptx	99	82.006	ENSMMUG00000007724	APTX	96	82.006	Macaca_mulatta
ENSRNOG00000006582	Aptx	99	81.711	ENSMNEG00000042341	APTX	99	81.711	Macaca_nemestrina
ENSRNOG00000006582	Aptx	99	81.416	ENSMLEG00000035137	APTX	99	81.416	Mandrillus_leucophaeus
ENSRNOG00000006582	Aptx	99	59.281	ENSMAMG00000018377	aptx	99	59.281	Mastacembelus_armatus
ENSRNOG00000006582	Aptx	99	60.947	ENSMZEG00005022621	aptx	100	60.947	Maylandia_zebra
ENSRNOG00000006582	Aptx	54	72.626	ENSMGAG00000005736	APTX	99	72.626	Meleagris_gallopavo
ENSRNOG00000006582	Aptx	99	85.629	ENSMAUG00000006039	Aptx	99	92.935	Mesocricetus_auratus
ENSRNOG00000006582	Aptx	99	81.416	ENSMICG00000006603	APTX	97	81.416	Microcebus_murinus
ENSRNOG00000006582	Aptx	100	85.373	ENSMOCG00000000869	Aptx	100	92.935	Microtus_ochrogaster
ENSRNOG00000006582	Aptx	100	60.534	ENSMMOG00000007028	aptx	100	60.534	Mola_mola
ENSRNOG00000006582	Aptx	99	61.561	ENSMODG00000003365	APTX	99	61.561	Monodelphis_domestica
ENSRNOG00000006582	Aptx	99	53.916	ENSMALG00000003828	aptx	99	53.916	Monopterus_albus
ENSRNOG00000006582	Aptx	84	95.652	MGP_CAROLIEiJ_G0025897	-	100	95.652	Mus_caroli
ENSRNOG00000006582	Aptx	100	91.343	ENSMUSG00000028411	Aptx	100	97.283	Mus_musculus
ENSRNOG00000006582	Aptx	100	91.343	MGP_PahariEiJ_G0024020	Aptx	100	91.343	Mus_pahari
ENSRNOG00000006582	Aptx	100	91.940	MGP_SPRETEiJ_G0026846	Aptx	97	91.940	Mus_spretus
ENSRNOG00000006582	Aptx	99	80.531	ENSMPUG00000004290	APTX	99	80.531	Mustela_putorius_furo
ENSRNOG00000006582	Aptx	99	81.416	ENSMLUG00000016081	APTX	94	81.416	Myotis_lucifugus
ENSRNOG00000006582	Aptx	99	82.622	ENSNGAG00000016314	Aptx	99	90.164	Nannospalax_galili
ENSRNOG00000006582	Aptx	99	61.243	ENSNBRG00000014199	aptx	100	61.243	Neolamprologus_brichardi
ENSRNOG00000006582	Aptx	99	82.006	ENSNLEG00000032184	APTX	99	82.006	Nomascus_leucogenys
ENSRNOG00000006582	Aptx	99	62.170	ENSMEUG00000004153	APTX	98	62.170	Notamacropus_eugenii
ENSRNOG00000006582	Aptx	84	76.027	ENSOPRG00000012403	APTX	95	76.027	Ochotona_princeps
ENSRNOG00000006582	Aptx	99	67.890	ENSODEG00000000097	-	99	68.196	Octodon_degus
ENSRNOG00000006582	Aptx	99	80.000	ENSODEG00000015832	-	99	89.560	Octodon_degus
ENSRNOG00000006582	Aptx	99	60.241	ENSONIG00000014541	aptx	83	60.241	Oreochromis_niloticus
ENSRNOG00000006582	Aptx	85	62.829	ENSOANG00000009878	APTX	98	62.829	Ornithorhynchus_anatinus
ENSRNOG00000006582	Aptx	98	76.316	ENSOCUG00000025059	-	93	76.316	Oryctolagus_cuniculus
ENSRNOG00000006582	Aptx	99	82.006	ENSOCUG00000000738	-	99	80.412	Oryctolagus_cuniculus
ENSRNOG00000006582	Aptx	99	57.530	ENSORLG00000006237	aptx	99	57.530	Oryzias_latipes
ENSRNOG00000006582	Aptx	99	57.958	ENSORLG00020021478	aptx	99	57.958	Oryzias_latipes_hni
ENSRNOG00000006582	Aptx	99	59.756	ENSORLG00015021873	aptx	99	59.756	Oryzias_latipes_hsok
ENSRNOG00000006582	Aptx	98	51.765	ENSOMEG00000007875	aptx	94	51.765	Oryzias_melastigma
ENSRNOG00000006582	Aptx	99	81.416	ENSOGAG00000005388	APTX	95	81.416	Otolemur_garnettii
ENSRNOG00000006582	Aptx	99	80.826	ENSOARG00000009598	APTX	95	80.826	Ovis_aries
ENSRNOG00000006582	Aptx	99	82.006	ENSPPAG00000030295	APTX	96	82.006	Pan_paniscus
ENSRNOG00000006582	Aptx	99	80.531	ENSPPRG00000017524	APTX	99	80.531	Panthera_pardus
ENSRNOG00000006582	Aptx	99	80.531	ENSPTIG00000020000	APTX	99	80.531	Panthera_tigris_altaica
ENSRNOG00000006582	Aptx	99	82.006	ENSPTRG00000020850	APTX	99	82.006	Pan_troglodytes
ENSRNOG00000006582	Aptx	99	81.711	ENSPANG00000025301	APTX	96	81.711	Papio_anubis
ENSRNOG00000006582	Aptx	99	60.290	ENSPKIG00000013601	aptx	99	60.290	Paramormyrops_kingsleyae
ENSRNOG00000006582	Aptx	99	67.941	ENSPSIG00000010521	APTX	95	67.941	Pelodiscus_sinensis
ENSRNOG00000006582	Aptx	98	56.433	ENSPMGG00000018649	aptx	99	56.433	Periophthalmus_magnuspinnatus
ENSRNOG00000006582	Aptx	100	86.269	ENSPEMG00000007747	Aptx	100	92.391	Peromyscus_maniculatus_bairdii
ENSRNOG00000006582	Aptx	99	48.538	ENSPMAG00000008417	aptx	97	48.538	Petromyzon_marinus
ENSRNOG00000006582	Aptx	99	65.230	ENSPCIG00000029852	APTX	99	65.230	Phascolarctos_cinereus
ENSRNOG00000006582	Aptx	99	59.639	ENSPFOG00000004992	aptx	99	59.639	Poecilia_formosa
ENSRNOG00000006582	Aptx	99	59.940	ENSPFOG00000005131	-	99	59.940	Poecilia_formosa
ENSRNOG00000006582	Aptx	99	59.940	ENSPLAG00000007960	APTX	99	59.940	Poecilia_latipinna
ENSRNOG00000006582	Aptx	99	59.940	ENSPLAG00000007906	aptx	99	59.940	Poecilia_latipinna
ENSRNOG00000006582	Aptx	99	60.241	ENSPMEG00000018504	aptx	99	60.241	Poecilia_mexicana
ENSRNOG00000006582	Aptx	99	59.940	ENSPMEG00000019789	APTX	99	59.940	Poecilia_mexicana
ENSRNOG00000006582	Aptx	99	55.352	ENSPREG00000004375	aptx	99	55.352	Poecilia_reticulata
ENSRNOG00000006582	Aptx	99	82.006	ENSPPYG00000019142	APTX	95	82.006	Pongo_abelii
ENSRNOG00000006582	Aptx	99	70.206	ENSPCAG00000010014	APTX	99	70.206	Procavia_capensis
ENSRNOG00000006582	Aptx	99	83.481	ENSPCOG00000016780	APTX	99	83.481	Propithecus_coquereli
ENSRNOG00000006582	Aptx	99	79.646	ENSPVAG00000011468	APTX	96	79.646	Pteropus_vampyrus
ENSRNOG00000006582	Aptx	99	61.243	ENSPNYG00000007675	aptx	100	61.243	Pundamilia_nyererei
ENSRNOG00000006582	Aptx	99	56.176	ENSPNAG00000015984	aptx	99	56.176	Pygocentrus_nattereri
ENSRNOG00000006582	Aptx	99	81.121	ENSRBIG00000042913	APTX	99	81.121	Rhinopithecus_bieti
ENSRNOG00000006582	Aptx	99	81.416	ENSRROG00000035395	APTX	99	81.416	Rhinopithecus_roxellana
ENSRNOG00000006582	Aptx	99	80.826	ENSSBOG00000025215	APTX	99	80.826	Saimiri_boliviensis_boliviensis
ENSRNOG00000006582	Aptx	98	66.866	ENSSHAG00000012205	APTX	94	66.866	Sarcophilus_harrisii
ENSRNOG00000006582	Aptx	99	61.714	ENSSFOG00015009267	aptx	99	61.714	Scleropages_formosus
ENSRNOG00000006582	Aptx	99	60.479	ENSSMAG00000008839	aptx	99	60.479	Scophthalmus_maximus
ENSRNOG00000006582	Aptx	99	60.790	ENSSDUG00000001989	aptx	99	60.790	Seriola_dumerili
ENSRNOG00000006582	Aptx	99	60.121	ENSSLDG00000004915	aptx	99	60.121	Seriola_lalandi_dorsalis
ENSRNOG00000006582	Aptx	99	63.533	ENSSPUG00000008994	APTX	86	63.533	Sphenodon_punctatus
ENSRNOG00000006582	Aptx	99	62.651	ENSSPAG00000020373	aptx	99	62.651	Stegastes_partitus
ENSRNOG00000006582	Aptx	99	81.953	ENSSSCG00000011001	APTX	99	81.953	Sus_scrofa
ENSRNOG00000006582	Aptx	99	63.235	ENSTGUG00000001441	APTX	99	63.235	Taeniopygia_guttata
ENSRNOG00000006582	Aptx	99	57.313	ENSTRUG00000009794	aptx	99	57.313	Takifugu_rubripes
ENSRNOG00000006582	Aptx	99	59.756	ENSTNIG00000010570	aptx	98	59.756	Tetraodon_nigroviridis
ENSRNOG00000006582	Aptx	99	76.401	ENSTBEG00000008504	APTX	95	76.401	Tupaia_belangeri
ENSRNOG00000006582	Aptx	93	74.448	ENSTTRG00000007384	APTX	95	74.448	Tursiops_truncatus
ENSRNOG00000006582	Aptx	99	79.941	ENSUAMG00000003700	APTX	97	79.941	Ursus_americanus
ENSRNOG00000006582	Aptx	99	79.941	ENSUMAG00000005837	APTX	99	79.941	Ursus_maritimus
ENSRNOG00000006582	Aptx	79	88.372	ENSVPAG00000001297	APTX	79	88.372	Vicugna_pacos
ENSRNOG00000006582	Aptx	99	80.531	ENSVVUG00000021130	APTX	99	80.531	Vulpes_vulpes
ENSRNOG00000006582	Aptx	99	58.841	ENSXETG00000024143	aptx	99	59.420	Xenopus_tropicalis
ENSRNOG00000006582	Aptx	99	55.367	ENSXCOG00000005020	aptx	99	55.367	Xiphophorus_couchianus
ENSRNOG00000006582	Aptx	99	59.337	ENSXMAG00000022086	aptx	96	59.337	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000012	single strand break repair	21873635.	IBA	Process
GO:0000012	single strand break repair	-	ISO	Process
GO:0000785	chromatin	-	ISO	Component
GO:0000790	nuclear chromatin	-	IEA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003682	chromatin binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003684	damaged DNA binding	-	ISO	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006266	DNA ligation	-	IEA	Process
GO:0006266	DNA ligation	-	ISO	Process
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0006302	double-strand break repair	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0008967	phosphoglycolate phosphatase activity	-	IEA	Function
GO:0008967	phosphoglycolate phosphatase activity	-	ISO	Function
GO:0016311	dephosphorylation	-	IEA	Process
GO:0030983	mismatched DNA binding	21873635.	IBA	Function
GO:0031647	regulation of protein stability	-	IEA	Process
GO:0031647	regulation of protein stability	-	ISO	Process
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	21873635.	IBA	Function
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	-	ISO	Function
GO:0042542	response to hydrogen peroxide	-	IEA	Process
GO:0042542	response to hydrogen peroxide	-	ISO	Process
GO:0046403	polynucleotide 3'-phosphatase activity	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0047485	protein N-terminus binding	-	IEA	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0051219	phosphoprotein binding	-	IEA	Function
GO:0051219	phosphoprotein binding	-	ISO	Function
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	IEA	Process
GO:0120108	DNA-3'-diphospho-5'-guanosine diphosphatase	-	IEA	Function
GO:1990165	single-strand break-containing DNA binding	21873635.	IBA	Function