EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000006652 (Gene tree)
Gene ID
84474
Gene Symbol
Ddx1
Alias
-
Full Name
DEAD-box helicase 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
30910 bases
Position
chr6:38422888-38453797
Accession
619903
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000009100DEADPF00270.291.6e-8011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000009100-2502-ENSRNOP00000009100740 (aa)-Q641Y8
Gene Model
Click here to download ENSRNOG00000006652's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006652's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000006652Ddx15542.857ENSRNOG00000002612Ddx526042.857
ENSRNOG00000006652Ddx15439.394ENSRNOG00000022368Ddx497239.394
ENSRNOG00000006652Ddx15449.180ENSRNOG00000004670Ddx566849.180
ENSRNOG00000006652Ddx15443.103ENSRNOG00000042451Ddx595643.103
ENSRNOG00000006652Ddx15340.678ENSRNOG00000053932Ddx66340.678
ENSRNOG00000006652Ddx15439.344ENSRNOG00000013040Ddx315739.344
ENSRNOG00000006652Ddx15541.791ENSRNOG00000001043Ddx556041.791
ENSRNOG00000006652Ddx15640.580ENSRNOG00000012771Ddx415740.580
ENSRNOG00000006652Ddx16546.875ENSRNOG00000007838Ddx479346.875
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000006652Ddx110097.703ENSG00000079785DDX110097.703Homo_sapiens
ENSRNOG00000006652Ddx110084.595ENSAPOG00000003166ddx110084.595Acanthochromis_polyacanthus
ENSRNOG00000006652Ddx19997.970ENSAMEG00000001071DDX19997.970Ailuropoda_melanoleuca
ENSRNOG00000006652Ddx18983.206ENSACIG00000017422ddx19982.595Amphilophus_citrinellus
ENSRNOG00000006652Ddx18982.523ENSAOCG00000015436ddx19483.962Amphiprion_ocellaris
ENSRNOG00000006652Ddx110085.135ENSAPEG00000007699ddx110085.135Amphiprion_percula
ENSRNOG00000006652Ddx19484.527ENSATEG00000003965ddx19883.969Anabas_testudineus
ENSRNOG00000006652Ddx110092.608ENSAPLG00000011093DDX110092.608Anas_platyrhynchos
ENSRNOG00000006652Ddx19490.831ENSACAG00000011036DDX19990.831Anolis_carolinensis
ENSRNOG00000006652Ddx110097.973ENSANAG00000037912DDX110097.973Aotus_nancymaae
ENSRNOG00000006652Ddx19984.668ENSACLG00000008850ddx19983.639Astatotilapia_calliptera
ENSRNOG00000006652Ddx110085.135ENSAMXG00000002100ddx110085.135Astyanax_mexicanus
ENSRNOG00000006652Ddx110097.703ENSBTAG00000009906DDX110097.703Bos_taurus
ENSRNOG00000006652Ddx19847.446WBGene00021938Y55F3BR.19847.446Caenorhabditis_elegans
ENSRNOG00000006652Ddx110097.973ENSCJAG00000007076DDX110097.973Callithrix_jacchus
ENSRNOG00000006652Ddx110098.108ENSCAFG00000003686DDX110098.108Canis_familiaris
ENSRNOG00000006652Ddx110098.108ENSCAFG00020026083DDX110098.108Canis_lupus_dingo
ENSRNOG00000006652Ddx110097.703ENSCHIG00000011046DDX110097.703Capra_hircus
ENSRNOG00000006652Ddx19970.149ENSTSYG00000037396-9873.525Carlito_syrichta
ENSRNOG00000006652Ddx110098.378ENSTSYG00000002477-10098.378Carlito_syrichta
ENSRNOG00000006652Ddx18677.294ENSCAPG00000008906-9377.294Cavia_aperea
ENSRNOG00000006652Ddx18894.640ENSCPOG00000009816-9694.640Cavia_porcellus
ENSRNOG00000006652Ddx16896.016ENSCPOG00000032467-10096.016Cavia_porcellus
ENSRNOG00000006652Ddx110097.973ENSCCAG00000030085DDX110097.973Cebus_capucinus
ENSRNOG00000006652Ddx110097.838ENSCATG00000033924DDX110097.838Cercocebus_atys
ENSRNOG00000006652Ddx110097.297ENSCLAG00000005434DDX110097.297Chinchilla_lanigera
ENSRNOG00000006652Ddx110097.838ENSCSAG00000007883DDX110097.838Chlorocebus_sabaeus
ENSRNOG00000006652Ddx17398.575ENSCHOG00000002171DDX17498.575Choloepus_hoffmanni
ENSRNOG00000006652Ddx19987.228ENSCPBG00000013330DDX19992.271Chrysemys_picta_bellii
ENSRNOG00000006652Ddx110065.684ENSCING00000001176-10065.554Ciona_intestinalis
ENSRNOG00000006652Ddx19860.440ENSCSAVG00000003028-9960.440Ciona_savignyi
ENSRNOG00000006652Ddx110097.703ENSCANG00000031530DDX110097.703Colobus_angolensis_palliatus
ENSRNOG00000006652Ddx110099.189ENSCGRG00001013025Ddx110099.189Cricetulus_griseus_chok1gshd
ENSRNOG00000006652Ddx110099.189ENSCGRG00000000676Ddx110099.189Cricetulus_griseus_crigri
ENSRNOG00000006652Ddx19984.605ENSCSEG00000002630ddx110084.605Cynoglossus_semilaevis
ENSRNOG00000006652Ddx19984.060ENSCVAG00000020927ddx110084.060Cyprinodon_variegatus
ENSRNOG00000006652Ddx110084.324ENSDARG00000032117ddx110084.332Danio_rerio
ENSRNOG00000006652Ddx110097.432ENSDNOG00000006905DDX110097.432Dasypus_novemcinctus
ENSRNOG00000006652Ddx110098.649ENSDORG00000012847Ddx110098.649Dipodomys_ordii
ENSRNOG00000006652Ddx19859.097FBgn0015075Ddx19959.644Drosophila_melanogaster
ENSRNOG00000006652Ddx110086.892ENSETEG00000014259DDX110086.892Echinops_telfairi
ENSRNOG00000006652Ddx16477.754ENSEBUG00000009800-9977.754Eptatretus_burgeri
ENSRNOG00000006652Ddx110097.838ENSEASG00005009335DDX19297.838Equus_asinus_asinus
ENSRNOG00000006652Ddx19497.848ENSECAG00000016396DDX110097.848Equus_caballus
ENSRNOG00000006652Ddx18994.727ENSEEUG00000001606DDX18994.727Erinaceus_europaeus
ENSRNOG00000006652Ddx110082.726ENSELUG00000006743ddx110082.726Esox_lucius
ENSRNOG00000006652Ddx110098.243ENSFCAG00000004680DDX110098.243Felis_catus
ENSRNOG00000006652Ddx110092.297ENSFALG00000008696DDX110092.297Ficedula_albicollis
ENSRNOG00000006652Ddx110097.027ENSFDAG00000021305DDX110097.027Fukomys_damarensis
ENSRNOG00000006652Ddx110082.973ENSFHEG00000008444ddx110082.973Fundulus_heteroclitus
ENSRNOG00000006652Ddx110081.427ENSGMOG00000011300ddx110081.427Gadus_morhua
ENSRNOG00000006652Ddx110093.649ENSGALG00000016461DDX110093.649Gallus_gallus
ENSRNOG00000006652Ddx110083.784ENSGAFG00000004706ddx110083.784Gambusia_affinis
ENSRNOG00000006652Ddx110082.297ENSGACG00000011162ddx110082.297Gasterosteus_aculeatus
ENSRNOG00000006652Ddx110093.378ENSGAGG00000021020DDX110093.378Gopherus_agassizii
ENSRNOG00000006652Ddx110097.703ENSGGOG00000012482DDX110097.703Gorilla_gorilla
ENSRNOG00000006652Ddx110084.595ENSHBUG00000014069ddx110084.595Haplochromis_burtoni
ENSRNOG00000006652Ddx110097.432ENSHGLG00000000801DDX110097.432Heterocephalus_glaber_female
ENSRNOG00000006652Ddx19997.411ENSHGLG00100000711DDX110097.411Heterocephalus_glaber_male
ENSRNOG00000006652Ddx110084.189ENSHCOG00000011492ddx19684.189Hippocampus_comes
ENSRNOG00000006652Ddx110083.514ENSIPUG00000003494ddx110083.514Ictalurus_punctatus
ENSRNOG00000006652Ddx19998.638ENSSTOG00000003977DDX110098.638Ictidomys_tridecemlineatus
ENSRNOG00000006652Ddx18994.198ENSJJAG00000013315Ddx110094.198Jaculus_jaculus
ENSRNOG00000006652Ddx110085.676ENSKMAG00000011340ddx110085.676Kryptolebias_marmoratus
ENSRNOG00000006652Ddx18878.593ENSLBEG00000008692ddx19978.593Labrus_bergylta
ENSRNOG00000006652Ddx110087.568ENSLACG00000010529DDX110087.568Latimeria_chalumnae
ENSRNOG00000006652Ddx110087.131ENSLOCG00000016473ddx110087.131Lepisosteus_oculatus
ENSRNOG00000006652Ddx19997.558ENSLAFG00000002213DDX19997.558Loxodonta_africana
ENSRNOG00000006652Ddx110097.838ENSMFAG00000033987DDX110097.838Macaca_fascicularis
ENSRNOG00000006652Ddx110097.838ENSMMUG00000023437DDX110097.838Macaca_mulatta
ENSRNOG00000006652Ddx110097.838ENSMNEG00000029189DDX110097.838Macaca_nemestrina
ENSRNOG00000006652Ddx110097.703ENSMLEG00000030787DDX110097.703Mandrillus_leucophaeus
ENSRNOG00000006652Ddx110085.000ENSMAMG00000015916ddx110085.000Mastacembelus_armatus
ENSRNOG00000006652Ddx19984.668ENSMZEG00005015207ddx19983.639Maylandia_zebra
ENSRNOG00000006652Ddx19989.431ENSMGAG00000014025DDX110089.431Meleagris_gallopavo
ENSRNOG00000006652Ddx16498.182ENSMAUG00000016156Ddx110098.182Mesocricetus_auratus
ENSRNOG00000006652Ddx110097.973ENSMICG00000001023DDX110097.973Microcebus_murinus
ENSRNOG00000006652Ddx110099.189ENSMOCG00000000257Ddx110099.189Microtus_ochrogaster
ENSRNOG00000006652Ddx18982.927ENSMMOG00000015397ddx19982.927Mola_mola
ENSRNOG00000006652Ddx19994.844ENSMODG00000010275DDX19994.844Monodelphis_domestica
ENSRNOG00000006652Ddx110084.459ENSMALG00000016409ddx110084.459Monopterus_albus
ENSRNOG00000006652Ddx110099.324MGP_CAROLIEiJ_G0017622Ddx110099.324Mus_caroli
ENSRNOG00000006652Ddx110098.919ENSMUSG00000037149Ddx110098.919Mus_musculus
ENSRNOG00000006652Ddx110099.324MGP_PahariEiJ_G0029378Ddx110099.324Mus_pahari
ENSRNOG00000006652Ddx110098.919MGP_SPRETEiJ_G0018464Ddx110098.919Mus_spretus
ENSRNOG00000006652Ddx110098.378ENSMPUG00000013606DDX110098.378Mustela_putorius_furo
ENSRNOG00000006652Ddx19997.283ENSMLUG00000003027DDX19897.283Myotis_lucifugus
ENSRNOG00000006652Ddx19999.046ENSNGAG00000015783Ddx110099.046Nannospalax_galili
ENSRNOG00000006652Ddx17880.104ENSNBRG00000020677ddx19480.104Neolamprologus_brichardi
ENSRNOG00000006652Ddx110097.838ENSNLEG00000014417DDX110097.838Nomascus_leucogenys
ENSRNOG00000006652Ddx19992.750ENSMEUG00000008254DDX19992.750Notamacropus_eugenii
ENSRNOG00000006652Ddx19283.427ENSOPRG00000004290DDX110069.730Ochotona_princeps
ENSRNOG00000006652Ddx110097.297ENSODEG00000000569DDX110097.297Octodon_degus
ENSRNOG00000006652Ddx110085.290ENSONIG00000000513ddx110085.290Oreochromis_niloticus
ENSRNOG00000006652Ddx17592.115ENSOANG00000005450DDX19992.115Ornithorhynchus_anatinus
ENSRNOG00000006652Ddx110097.973ENSOCUG00000007010DDX110097.973Oryctolagus_cuniculus
ENSRNOG00000006652Ddx110084.865ENSORLG00000016709ddx110084.865Oryzias_latipes
ENSRNOG00000006652Ddx19984.605ENSORLG00020003290ddx110084.605Oryzias_latipes_hni
ENSRNOG00000006652Ddx110084.459ENSORLG00015022438ddx110084.459Oryzias_latipes_hsok
ENSRNOG00000006652Ddx110080.000ENSOMEG00000017620ddx110078.514Oryzias_melastigma
ENSRNOG00000006652Ddx19997.826ENSOGAG00000008730DDX110097.826Otolemur_garnettii
ENSRNOG00000006652Ddx19997.418ENSOARG00000016369DDX110097.418Ovis_aries
ENSRNOG00000006652Ddx110097.568ENSPPAG00000027432DDX110097.568Pan_paniscus
ENSRNOG00000006652Ddx110098.243ENSPPRG00000020556DDX110098.243Panthera_pardus
ENSRNOG00000006652Ddx110098.108ENSPTIG00000008267DDX110098.108Panthera_tigris_altaica
ENSRNOG00000006652Ddx110097.568ENSPTRG00000011670DDX110097.568Pan_troglodytes
ENSRNOG00000006652Ddx110097.973ENSPANG00000025185DDX110097.973Papio_anubis
ENSRNOG00000006652Ddx110084.324ENSPKIG00000012466ddx110084.469Paramormyrops_kingsleyae
ENSRNOG00000006652Ddx15490.323ENSPSIG00000012292DDX110090.323Pelodiscus_sinensis
ENSRNOG00000006652Ddx110082.027ENSPMGG00000000782ddx110080.541Periophthalmus_magnuspinnatus
ENSRNOG00000006652Ddx110098.378ENSPEMG00000016389Ddx110098.378Peromyscus_maniculatus_bairdii
ENSRNOG00000006652Ddx19979.348ENSPMAG00000009118-10079.348Petromyzon_marinus
ENSRNOG00000006652Ddx110095.676ENSPCIG00000010941DDX110095.676Phascolarctos_cinereus
ENSRNOG00000006652Ddx18682.271ENSPFOG00000006873-10082.271Poecilia_formosa
ENSRNOG00000006652Ddx110083.919ENSPFOG00000011921ddx110083.919Poecilia_formosa
ENSRNOG00000006652Ddx110083.649ENSPLAG00000005939ddx110083.649Poecilia_latipinna
ENSRNOG00000006652Ddx110084.189ENSPMEG00000011140ddx110084.189Poecilia_mexicana
ENSRNOG00000006652Ddx110083.784ENSPREG00000011751ddx110083.784Poecilia_reticulata
ENSRNOG00000006652Ddx110097.703ENSPPYG00000012638DDX110097.703Pongo_abelii
ENSRNOG00000006652Ddx110083.919ENSPCAG00000001491DDX110083.919Procavia_capensis
ENSRNOG00000006652Ddx19995.640ENSPCOG00000028185DDX19995.640Propithecus_coquereli
ENSRNOG00000006652Ddx110098.108ENSPVAG00000013618DDX110098.108Pteropus_vampyrus
ENSRNOG00000006652Ddx110084.595ENSPNYG00000013839ddx110084.595Pundamilia_nyererei
ENSRNOG00000006652Ddx18983.817ENSPNAG00000017033ddx19783.817Pygocentrus_nattereri
ENSRNOG00000006652Ddx110096.622ENSRBIG00000041664DDX110096.960Rhinopithecus_bieti
ENSRNOG00000006652Ddx110097.432ENSRROG00000031167DDX110097.432Rhinopithecus_roxellana
ENSRNOG00000006652Ddx110098.108ENSSBOG00000027577DDX110098.108Saimiri_boliviensis_boliviensis
ENSRNOG00000006652Ddx19986.974ENSSHAG00000009363DDX19986.974Sarcophilus_harrisii
ENSRNOG00000006652Ddx110083.514ENSSFOG00015014476ddx110083.514Scleropages_formosus
ENSRNOG00000006652Ddx110083.108ENSSMAG00000010094ddx110083.108Scophthalmus_maximus
ENSRNOG00000006652Ddx110084.595ENSSDUG00000012334ddx110084.595Seriola_dumerili
ENSRNOG00000006652Ddx110084.189ENSSLDG00000025345ddx110084.189Seriola_lalandi_dorsalis
ENSRNOG00000006652Ddx19986.649ENSSARG00000004536DDX110086.649Sorex_araneus
ENSRNOG00000006652Ddx110090.811ENSSPUG00000018835DDX110090.811Sphenodon_punctatus
ENSRNOG00000006652Ddx110079.865ENSSPAG00000023554ddx110079.865Stegastes_partitus
ENSRNOG00000006652Ddx110097.432ENSSSCG00000008619DDX110097.432Sus_scrofa
ENSRNOG00000006652Ddx110092.297ENSTGUG00000013096DDX110092.297Taeniopygia_guttata
ENSRNOG00000006652Ddx19983.604ENSTRUG00000015765ddx19983.604Takifugu_rubripes
ENSRNOG00000006652Ddx110084.189ENSTNIG00000016309ddx110084.189Tetraodon_nigroviridis
ENSRNOG00000006652Ddx19994.005ENSTBEG00000008454DDX110094.005Tupaia_belangeri
ENSRNOG00000006652Ddx110097.162ENSTTRG00000005081DDX110097.162Tursiops_truncatus
ENSRNOG00000006652Ddx17185.066ENSUAMG00000017375DDX19384.906Ursus_americanus
ENSRNOG00000006652Ddx19998.365ENSUMAG00000023450DDX110098.365Ursus_maritimus
ENSRNOG00000006652Ddx18598.337ENSVPAG00000007764DDX18598.337Vicugna_pacos
ENSRNOG00000006652Ddx19998.095ENSVVUG00000013085DDX19698.095Vulpes_vulpes
ENSRNOG00000006652Ddx110090.270ENSXETG00000017825ddx110090.270Xenopus_tropicalis
ENSRNOG00000006652Ddx110081.124ENSXCOG00000007082ddx110081.124Xiphophorus_couchianus
ENSRNOG00000006652Ddx110083.649ENSXMAG00000004555ddx110083.649Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002735positive regulation of myeloid dendritic cell cytokine production-IEAProcess
GO:0002735positive regulation of myeloid dendritic cell cytokine production-ISOProcess
GO:0003677DNA binding-IEAFunction
GO:0003682chromatin binding-ISOFunction
GO:0003682chromatin binding-ISSFunction
GO:0003712transcription coregulator activity-ISOFunction
GO:0003712transcription coregulator activity-ISSFunction
GO:0003725double-stranded RNA binding-IEAFunction
GO:0003725double-stranded RNA binding-ISOFunction
GO:0004518nuclease activity-ISOFunction
GO:0004518nuclease activity-ISSFunction
GO:0004527exonuclease activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0005737cytoplasm-ISSComponent
GO:0005739mitochondrion-ISOComponent
GO:0005739mitochondrion-ISSComponent
GO:0005829cytosol-ISOComponent
GO:0005829cytosol-ISSComponent
GO:0006302double-strand break repair-ISOProcess
GO:0006302double-strand break repair-ISSProcess
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation-ISOProcess
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation-ISSProcess
GO:0006397mRNA processing-IEAProcess
GO:0007275multicellular organism development-IEAProcess
GO:0007275multicellular organism development-ISOProcess
GO:0008026ATP-dependent helicase activity-ISOFunction
GO:0008026ATP-dependent helicase activity-ISSFunction
GO:0008143poly(A) binding-ISOFunction
GO:0008143poly(A) binding-ISSFunction
GO:0009615response to virus-ISOProcess
GO:0010494cytoplasmic stress granule-ISOComponent
GO:0010494cytoplasmic stress granule-ISSComponent
GO:0032508DNA duplex unwinding-ISOProcess
GO:0032508DNA duplex unwinding-ISSProcess
GO:0033677DNA/RNA helicase activity-ISOFunction
GO:0033677DNA/RNA helicase activity-ISSFunction
GO:0043123positive regulation of I-kappaB kinase/NF-kappaB signaling-ISOProcess
GO:0043123positive regulation of I-kappaB kinase/NF-kappaB signaling-ISSProcess
GO:0043330response to exogenous dsRNA-IEAProcess
GO:0043330response to exogenous dsRNA-ISOProcess
GO:0045087innate immune response-IEAProcess
GO:0051607defense response to virus-IEAProcess
GO:0071920cleavage body-ISOComponent
GO:0071920cleavage body-ISSComponent
GO:0072669tRNA-splicing ligase complex-ISOComponent
GO:0072669tRNA-splicing ligase complex-ISSComponent
GO:0090305nucleic acid phosphodiester bond hydrolysis-IEAProcess
GO:0090305nucleic acid phosphodiester bond hydrolysis-ISOProcess
GO:1903506regulation of nucleic acid-templated transcription-IEAProcess
GO:1903608protein localization to cytoplasmic stress granule-IEAProcess
GO:1903608protein localization to cytoplasmic stress granule-ISOProcess
GO:1990904ribonucleoprotein complex-ISOComponent

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