EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000006941 (Gene tree)
Gene ID: 500288
Gene Symbol: Thumpd3
Alias: LOC500288|RGD1560852
Full Name: THUMP domain containing 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 22952 bases
Position: chr4:144985880-145008831
Accession: 1560852
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000009464	THUMP	PF02926.17	9.2e-12	1	1
ENSRNOP00000009464	UPF0020	PF01170.18	3.6e-55	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000009464	-	1979	XM_006237049	ENSRNOP00000009464	504 (aa)	XP_006237111	D3ZSV7

Gene Model

Click here to download ENSRNOG00000006941's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006941's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000006941	Thumpd3	100	80.357	ENSG00000134077	THUMPD3	99	80.357	Homo_sapiens
ENSRNOG00000006941	Thumpd3	90	61.674	ENSAPOG00000015836	thumpd3	90	62.115	Acanthochromis_polyacanthus
ENSRNOG00000006941	Thumpd3	99	83.068	ENSAMEG00000011321	THUMPD3	99	83.068	Ailuropoda_melanoleuca
ENSRNOG00000006941	Thumpd3	90	61.319	ENSACIG00000020096	thumpd3	88	62.144	Amphilophus_citrinellus
ENSRNOG00000006941	Thumpd3	90	60.965	ENSAOCG00000004399	thumpd3	88	60.965	Amphiprion_ocellaris
ENSRNOG00000006941	Thumpd3	90	61.184	ENSAPEG00000016740	thumpd3	88	61.184	Amphiprion_percula
ENSRNOG00000006941	Thumpd3	90	60.965	ENSATEG00000005345	thumpd3	89	60.965	Anabas_testudineus
ENSRNOG00000006941	Thumpd3	78	70.025	ENSAPLG00000003598	THUMPD3	99	70.025	Anas_platyrhynchos
ENSRNOG00000006941	Thumpd3	89	65.190	ENSACAG00000014974	THUMPD3	91	65.190	Anolis_carolinensis
ENSRNOG00000006941	Thumpd3	100	78.770	ENSANAG00000002365	THUMPD3	100	78.770	Aotus_nancymaae
ENSRNOG00000006941	Thumpd3	63	68.831	ENSACLG00000013504	-	73	68.831	Astatotilapia_calliptera
ENSRNOG00000006941	Thumpd3	90	61.002	ENSACLG00000023333	thumpd3	88	61.184	Astatotilapia_calliptera
ENSRNOG00000006941	Thumpd3	92	59.408	ENSAMXG00000015683	thumpd3	96	58.140	Astyanax_mexicanus
ENSRNOG00000006941	Thumpd3	99	81.673	ENSBTAG00000003112	THUMPD3	99	81.673	Bos_taurus
ENSRNOG00000006941	Thumpd3	87	35.068	WBGene00010846	M04B2.2	96	35.068	Caenorhabditis_elegans
ENSRNOG00000006941	Thumpd3	100	77.778	ENSCJAG00000015949	THUMPD3	99	77.778	Callithrix_jacchus
ENSRNOG00000006941	Thumpd3	99	82.470	ENSCAFG00000005499	THUMPD3	99	82.470	Canis_familiaris
ENSRNOG00000006941	Thumpd3	76	82.078	ENSCAFG00000008060	-	94	82.078	Canis_familiaris
ENSRNOG00000006941	Thumpd3	84	81.991	ENSCAFG00020025887	-	97	81.991	Canis_lupus_dingo
ENSRNOG00000006941	Thumpd3	99	82.470	ENSCAFG00020008895	-	99	82.470	Canis_lupus_dingo
ENSRNOG00000006941	Thumpd3	99	81.474	ENSCHIG00000024037	THUMPD3	99	81.474	Capra_hircus
ENSRNOG00000006941	Thumpd3	100	79.365	ENSTSYG00000000159	THUMPD3	100	79.365	Carlito_syrichta
ENSRNOG00000006941	Thumpd3	100	53.360	ENSCAPG00000017486	THUMPD3	100	53.360	Cavia_aperea
ENSRNOG00000006941	Thumpd3	100	80.198	ENSCPOG00000033287	THUMPD3	100	80.198	Cavia_porcellus
ENSRNOG00000006941	Thumpd3	100	78.968	ENSCCAG00000027067	-	100	78.968	Cebus_capucinus
ENSRNOG00000006941	Thumpd3	100	72.421	ENSCCAG00000021429	-	100	72.421	Cebus_capucinus
ENSRNOG00000006941	Thumpd3	100	79.960	ENSCATG00000040999	THUMPD3	100	79.960	Cercocebus_atys
ENSRNOG00000006941	Thumpd3	100	80.990	ENSCLAG00000000690	THUMPD3	100	80.990	Chinchilla_lanigera
ENSRNOG00000006941	Thumpd3	100	79.960	ENSCSAG00000010753	THUMPD3	100	79.960	Chlorocebus_sabaeus
ENSRNOG00000006941	Thumpd3	87	60.156	ENSCHOG00000012851	THUMPD3	85	60.156	Choloepus_hoffmanni
ENSRNOG00000006941	Thumpd3	96	67.535	ENSCPBG00000014771	THUMPD3	98	67.535	Chrysemys_picta_bellii
ENSRNOG00000006941	Thumpd3	91	39.915	ENSCSAVG00000008668	-	97	39.746	Ciona_savignyi
ENSRNOG00000006941	Thumpd3	100	80.159	ENSCANG00000031901	THUMPD3	100	80.159	Colobus_angolensis_palliatus
ENSRNOG00000006941	Thumpd3	100	88.889	ENSCGRG00001024117	Thumpd3	100	88.889	Cricetulus_griseus_chok1gshd
ENSRNOG00000006941	Thumpd3	100	88.889	ENSCGRG00000018116	Thumpd3	100	88.889	Cricetulus_griseus_crigri
ENSRNOG00000006941	Thumpd3	91	59.436	ENSCSEG00000002546	thumpd3	92	59.219	Cynoglossus_semilaevis
ENSRNOG00000006941	Thumpd3	90	62.198	ENSCVAG00000001019	thumpd3	87	62.198	Cyprinodon_variegatus
ENSRNOG00000006941	Thumpd3	89	62.806	ENSDARG00000059634	thumpd3	92	61.319	Danio_rerio
ENSRNOG00000006941	Thumpd3	98	82.294	ENSDNOG00000047668	THUMPD3	100	80.285	Dasypus_novemcinctus
ENSRNOG00000006941	Thumpd3	98	81.579	ENSDORG00000003257	Thumpd3	98	81.579	Dipodomys_ordii
ENSRNOG00000006941	Thumpd3	67	73.669	ENSETEG00000020239	-	66	73.669	Echinops_telfairi
ENSRNOG00000006941	Thumpd3	87	52.834	ENSEBUG00000004221	thumpd3	95	52.608	Eptatretus_burgeri
ENSRNOG00000006941	Thumpd3	99	81.325	ENSEASG00005013327	THUMPD3	99	81.325	Equus_asinus_asinus
ENSRNOG00000006941	Thumpd3	99	83.068	ENSECAG00000002016	THUMPD3	99	83.068	Equus_caballus
ENSRNOG00000006941	Thumpd3	99	73.904	ENSEEUG00000014696	THUMPD3	99	73.904	Erinaceus_europaeus
ENSRNOG00000006941	Thumpd3	83	69.258	ENSELUG00000018246	thumpd3	71	69.258	Esox_lucius
ENSRNOG00000006941	Thumpd3	99	82.869	ENSFCAG00000006171	THUMPD3	99	82.869	Felis_catus
ENSRNOG00000006941	Thumpd3	84	64.733	ENSFALG00000013631	THUMPD3	90	64.733	Ficedula_albicollis
ENSRNOG00000006941	Thumpd3	100	81.188	ENSFDAG00000014825	THUMPD3	100	81.188	Fukomys_damarensis
ENSRNOG00000006941	Thumpd3	90	61.894	ENSFHEG00000006006	thumpd3	88	62.335	Fundulus_heteroclitus
ENSRNOG00000006941	Thumpd3	90	58.862	ENSGMOG00000007923	thumpd3	89	59.121	Gadus_morhua
ENSRNOG00000006941	Thumpd3	90	66.245	ENSGALG00000044813	THUMPD3	95	66.245	Gallus_gallus
ENSRNOG00000006941	Thumpd3	90	60.307	ENSGAFG00000021645	thumpd3	88	60.307	Gambusia_affinis
ENSRNOG00000006941	Thumpd3	91	58.824	ENSGACG00000000930	thumpd3	94	58.824	Gasterosteus_aculeatus
ENSRNOG00000006941	Thumpd3	96	67.465	ENSGAGG00000022750	THUMPD3	98	67.465	Gopherus_agassizii
ENSRNOG00000006941	Thumpd3	100	80.159	ENSGGOG00000000604	THUMPD3	99	80.159	Gorilla_gorilla
ENSRNOG00000006941	Thumpd3	90	61.220	ENSHBUG00000013405	thumpd3	88	61.220	Haplochromis_burtoni
ENSRNOG00000006941	Thumpd3	100	80.000	ENSHGLG00000016200	THUMPD3	100	80.000	Heterocephalus_glaber_female
ENSRNOG00000006941	Thumpd3	100	80.396	ENSHGLG00100017321	-	100	80.396	Heterocephalus_glaber_male
ENSRNOG00000006941	Thumpd3	96	70.103	ENSHGLG00100000505	-	100	70.103	Heterocephalus_glaber_male
ENSRNOG00000006941	Thumpd3	92	57.511	ENSHCOG00000004871	thumpd3	94	58.190	Hippocampus_comes
ENSRNOG00000006941	Thumpd3	90	61.538	ENSIPUG00000019415	THUMPD3	90	60.220	Ictalurus_punctatus
ENSRNOG00000006941	Thumpd3	100	81.746	ENSSTOG00000003973	THUMPD3	100	81.746	Ictidomys_tridecemlineatus
ENSRNOG00000006941	Thumpd3	99	74.096	ENSJJAG00000017751	Thumpd3	97	74.096	Jaculus_jaculus
ENSRNOG00000006941	Thumpd3	93	60.814	ENSKMAG00000021025	thumpd3	85	60.814	Kryptolebias_marmoratus
ENSRNOG00000006941	Thumpd3	90	61.404	ENSLBEG00000012252	thumpd3	88	60.526	Labrus_bergylta
ENSRNOG00000006941	Thumpd3	92	61.653	ENSLACG00000018604	THUMPD3	92	62.025	Latimeria_chalumnae
ENSRNOG00000006941	Thumpd3	89	63.169	ENSLOCG00000009800	thumpd3	94	62.151	Lepisosteus_oculatus
ENSRNOG00000006941	Thumpd3	99	81.746	ENSLAFG00000005103	THUMPD3	99	81.746	Loxodonta_africana
ENSRNOG00000006941	Thumpd3	100	79.960	ENSMFAG00000044884	THUMPD3	100	79.960	Macaca_fascicularis
ENSRNOG00000006941	Thumpd3	100	79.960	ENSMMUG00000017307	THUMPD3	100	79.960	Macaca_mulatta
ENSRNOG00000006941	Thumpd3	100	79.960	ENSMNEG00000030529	THUMPD3	100	79.960	Macaca_nemestrina
ENSRNOG00000006941	Thumpd3	100	79.960	ENSMLEG00000032943	THUMPD3	100	79.960	Mandrillus_leucophaeus
ENSRNOG00000006941	Thumpd3	91	58.710	ENSMAMG00000023934	thumpd3	91	59.149	Mastacembelus_armatus
ENSRNOG00000006941	Thumpd3	90	61.002	ENSMZEG00005010623	thumpd3	88	61.184	Maylandia_zebra
ENSRNOG00000006941	Thumpd3	80	67.574	ENSMGAG00000010182	THUMPD3	100	67.574	Meleagris_gallopavo
ENSRNOG00000006941	Thumpd3	100	90.476	ENSMAUG00000012250	Thumpd3	100	90.476	Mesocricetus_auratus
ENSRNOG00000006941	Thumpd3	97	77.888	ENSMICG00000010095	THUMPD3	96	77.888	Microcebus_murinus
ENSRNOG00000006941	Thumpd3	100	89.703	ENSMOCG00000020148	Thumpd3	100	89.703	Microtus_ochrogaster
ENSRNOG00000006941	Thumpd3	91	57.576	ENSMMOG00000021791	thumpd3	93	57.576	Mola_mola
ENSRNOG00000006941	Thumpd3	95	73.770	ENSMODG00000004715	-	95	73.770	Monodelphis_domestica
ENSRNOG00000006941	Thumpd3	90	59.389	ENSMALG00000017316	thumpd3	93	58.734	Monopterus_albus
ENSRNOG00000006941	Thumpd3	62	88.854	MGP_CAROLIEiJ_G0028714	-	65	88.854	Mus_caroli
ENSRNOG00000006941	Thumpd3	99	92.629	ENSMUSG00000030264	Thumpd3	99	92.629	Mus_musculus
ENSRNOG00000006941	Thumpd3	100	91.667	MGP_PahariEiJ_G0022465	Thumpd3	100	91.667	Mus_pahari
ENSRNOG00000006941	Thumpd3	100	92.857	MGP_SPRETEiJ_G0029742	Thumpd3	100	92.857	Mus_spretus
ENSRNOG00000006941	Thumpd3	99	83.665	ENSMPUG00000017066	-	99	83.665	Mustela_putorius_furo
ENSRNOG00000006941	Thumpd3	99	76.506	ENSMPUG00000005219	-	99	76.305	Mustela_putorius_furo
ENSRNOG00000006941	Thumpd3	99	81.489	ENSMLUG00000008538	THUMPD3	97	81.489	Myotis_lucifugus
ENSRNOG00000006941	Thumpd3	99	68.127	ENSNGAG00000001549	-	99	69.124	Nannospalax_galili
ENSRNOG00000006941	Thumpd3	99	85.857	ENSNGAG00000021014	-	99	85.857	Nannospalax_galili
ENSRNOG00000006941	Thumpd3	90	61.002	ENSNBRG00000004886	thumpd3	88	60.573	Neolamprologus_brichardi
ENSRNOG00000006941	Thumpd3	100	80.159	ENSNLEG00000003863	THUMPD3	100	80.159	Nomascus_leucogenys
ENSRNOG00000006941	Thumpd3	83	73.031	ENSMEUG00000009819	THUMPD3	98	73.031	Notamacropus_eugenii
ENSRNOG00000006941	Thumpd3	82	81.687	ENSOPRG00000002020	THUMPD3	99	81.687	Ochotona_princeps
ENSRNOG00000006941	Thumpd3	70	77.746	ENSODEG00000018242	THUMPD3	100	77.746	Octodon_degus
ENSRNOG00000006941	Thumpd3	90	61.233	ENSONIG00000018977	thumpd3	88	60.573	Oreochromis_niloticus
ENSRNOG00000006941	Thumpd3	82	65.550	ENSOANG00000014481	THUMPD3	98	65.550	Ornithorhynchus_anatinus
ENSRNOG00000006941	Thumpd3	99	80.119	ENSOCUG00000010921	THUMPD3	99	80.119	Oryctolagus_cuniculus
ENSRNOG00000006941	Thumpd3	95	56.639	ENSORLG00000000676	thumpd3	94	56.224	Oryzias_latipes
ENSRNOG00000006941	Thumpd3	95	57.054	ENSORLG00020007509	thumpd3	94	56.639	Oryzias_latipes_hni
ENSRNOG00000006941	Thumpd3	52	31.061	ENSORLG00020018792	thumpd2	58	31.439	Oryzias_latipes_hni
ENSRNOG00000006941	Thumpd3	95	57.054	ENSORLG00015003615	thumpd3	94	56.639	Oryzias_latipes_hsok
ENSRNOG00000006941	Thumpd3	92	58.099	ENSOMEG00000014115	thumpd3	91	58.099	Oryzias_melastigma
ENSRNOG00000006941	Thumpd3	82	81.553	ENSOGAG00000017111	THUMPD3	100	81.553	Otolemur_garnettii
ENSRNOG00000006941	Thumpd3	99	81.928	ENSOARG00000007139	THUMPD3	97	81.928	Ovis_aries
ENSRNOG00000006941	Thumpd3	100	79.960	ENSPPAG00000025852	THUMPD3	99	79.960	Pan_paniscus
ENSRNOG00000006941	Thumpd3	99	83.267	ENSPPRG00000008071	THUMPD3	99	83.267	Panthera_pardus
ENSRNOG00000006941	Thumpd3	99	82.869	ENSPTIG00000017923	THUMPD3	99	82.869	Panthera_tigris_altaica
ENSRNOG00000006941	Thumpd3	100	79.960	ENSPTRG00000014585	THUMPD3	99	79.960	Pan_troglodytes
ENSRNOG00000006941	Thumpd3	100	79.762	ENSPANG00000016253	THUMPD3	99	79.762	Papio_anubis
ENSRNOG00000006941	Thumpd3	95	60.797	ENSPKIG00000014009	thumpd3	96	60.797	Paramormyrops_kingsleyae
ENSRNOG00000006941	Thumpd3	96	67.002	ENSPSIG00000007370	THUMPD3	98	67.002	Pelodiscus_sinensis
ENSRNOG00000006941	Thumpd3	92	59.362	ENSPMGG00000017563	thumpd3	95	59.362	Periophthalmus_magnuspinnatus
ENSRNOG00000006941	Thumpd3	100	90.476	ENSPEMG00000022411	Thumpd3	100	90.476	Peromyscus_maniculatus_bairdii
ENSRNOG00000006941	Thumpd3	91	53.958	ENSPMAG00000001291	thumpd3	98	53.958	Petromyzon_marinus
ENSRNOG00000006941	Thumpd3	99	70.817	ENSPCIG00000002049	THUMPD3	99	71.289	Phascolarctos_cinereus
ENSRNOG00000006941	Thumpd3	91	59.870	ENSPFOG00000002318	thumpd3	89	59.870	Poecilia_formosa
ENSRNOG00000006941	Thumpd3	91	59.653	ENSPLAG00000014804	thumpd3	89	59.653	Poecilia_latipinna
ENSRNOG00000006941	Thumpd3	91	59.653	ENSPMEG00000000582	thumpd3	89	59.653	Poecilia_mexicana
ENSRNOG00000006941	Thumpd3	90	59.607	ENSPREG00000009176	thumpd3	88	59.607	Poecilia_reticulata
ENSRNOG00000006941	Thumpd3	100	80.159	ENSPPYG00000029461	THUMPD3	100	80.159	Pongo_abelii
ENSRNOG00000006941	Thumpd3	99	58.000	ENSPPYG00000017616	-	98	57.800	Pongo_abelii
ENSRNOG00000006941	Thumpd3	83	81.146	ENSPCAG00000015398	THUMPD3	99	81.146	Procavia_capensis
ENSRNOG00000006941	Thumpd3	87	76.765	ENSPCOG00000023618	-	99	76.765	Propithecus_coquereli
ENSRNOG00000006941	Thumpd3	100	73.611	ENSPCOG00000018095	-	100	75.000	Propithecus_coquereli
ENSRNOG00000006941	Thumpd3	99	83.501	ENSPVAG00000008721	THUMPD3	99	83.501	Pteropus_vampyrus
ENSRNOG00000006941	Thumpd3	90	61.002	ENSPNYG00000006918	thumpd3	88	61.184	Pundamilia_nyererei
ENSRNOG00000006941	Thumpd3	93	59.787	ENSPNAG00000014936	thumpd3	94	58.936	Pygocentrus_nattereri
ENSRNOG00000006941	Thumpd3	100	79.960	ENSRBIG00000035954	THUMPD3	100	79.960	Rhinopithecus_bieti
ENSRNOG00000006941	Thumpd3	100	79.762	ENSRROG00000035734	THUMPD3	100	79.762	Rhinopithecus_roxellana
ENSRNOG00000006941	Thumpd3	100	78.373	ENSSBOG00000023567	THUMPD3	100	78.373	Saimiri_boliviensis_boliviensis
ENSRNOG00000006941	Thumpd3	98	71.627	ENSSHAG00000014467	THUMPD3	98	71.627	Sarcophilus_harrisii
ENSRNOG00000006941	Thumpd3	92	63.636	ENSSFOG00015019210	thumpd3	92	63.636	Scleropages_formosus
ENSRNOG00000006941	Thumpd3	91	59.188	ENSSMAG00000000609	thumpd3	94	59.615	Scophthalmus_maximus
ENSRNOG00000006941	Thumpd3	90	60.793	ENSSDUG00000012179	thumpd3	91	60.793	Seriola_dumerili
ENSRNOG00000006941	Thumpd3	90	61.233	ENSSLDG00000022028	thumpd3	89	61.233	Seriola_lalandi_dorsalis
ENSRNOG00000006941	Thumpd3	87	82.635	ENSSARG00000002239	THUMPD3	86	82.635	Sorex_araneus
ENSRNOG00000006941	Thumpd3	97	65.613	ENSSPUG00000017461	THUMPD3	99	65.613	Sphenodon_punctatus
ENSRNOG00000006941	Thumpd3	90	60.526	ENSSPAG00000008345	thumpd3	87	60.917	Stegastes_partitus
ENSRNOG00000006941	Thumpd3	99	82.072	ENSSSCG00000011542	THUMPD3	99	82.072	Sus_scrofa
ENSRNOG00000006941	Thumpd3	89	67.627	ENSTGUG00000010440	THUMPD3	100	67.627	Taeniopygia_guttata
ENSRNOG00000006941	Thumpd3	90	51.982	ENSTRUG00000004420	thumpd3	90	51.322	Takifugu_rubripes
ENSRNOG00000006941	Thumpd3	90	60.573	ENSTNIG00000014627	thumpd3	94	60.132	Tetraodon_nigroviridis
ENSRNOG00000006941	Thumpd3	100	76.587	ENSTBEG00000003450	THUMPD3	99	76.587	Tupaia_belangeri
ENSRNOG00000006941	Thumpd3	99	81.275	ENSTTRG00000009694	THUMPD3	99	81.275	Tursiops_truncatus
ENSRNOG00000006941	Thumpd3	99	83.665	ENSUAMG00000009412	THUMPD3	99	83.665	Ursus_americanus
ENSRNOG00000006941	Thumpd3	99	81.275	ENSUMAG00000019241	THUMPD3	99	80.279	Ursus_maritimus
ENSRNOG00000006941	Thumpd3	83	79.616	ENSVPAG00000002855	THUMPD3	100	79.616	Vicugna_pacos
ENSRNOG00000006941	Thumpd3	99	82.869	ENSVVUG00000025278	THUMPD3	99	82.869	Vulpes_vulpes
ENSRNOG00000006941	Thumpd3	97	59.394	ENSXETG00000001447	thumpd3	96	59.394	Xenopus_tropicalis
ENSRNOG00000006941	Thumpd3	93	58.475	ENSXCOG00000000159	thumpd3	92	59.868	Xiphophorus_couchianus
ENSRNOG00000006941	Thumpd3	90	59.868	ENSXMAG00000001423	thumpd3	88	59.868	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0016423	tRNA (guanine) methyltransferase activity	21873635.	IBA	Function
GO:0030488	tRNA methylation	21873635.	IBA	Process