EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000006961 (Gene tree)
Gene ID
171365
Gene Symbol
Snrpb
Alias
SM11|sm-B|smB|snRNP-B
Full Name
small nuclear ribonucleoprotein polypeptides B and B1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
7796 bases
Position
chr3:122695939-122703734
Accession
621301
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000039298LSMPF01423.226.9e-2011
ENSRNOP00000072319LSMPF01423.224.8e-1411
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000079923-1661-ENSRNOP0000007231971 (aa)-Q5XII7
ENSRNOT00000049857-1073-ENSRNOP00000039298231 (aa)-B0BN51
Gene Model
Click here to download ENSRNOG00000006961's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
rno05322Systemic lupus erythematosusKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000006961's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000006961Snrpb9692.760ENSRNOG00000059764Snrpn9292.760
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000006961Snrpb100100.000ENSG00000125835SNRPB100100.000Homo_sapiens
ENSRNOG00000006961Snrpb7398.077ENSAPOG00000019606snrpb5694.643Acanthochromis_polyacanthus
ENSRNOG00000006961Snrpb99100.000ENSAMEG00000011353SNRPB94100.000Ailuropoda_melanoleuca
ENSRNOG00000006961Snrpb7692.571ENSACIG00000014480snrpb7194.444Amphilophus_citrinellus
ENSRNOG00000006961Snrpb7398.077ENSAOCG00000006876snrpb6994.643Amphiprion_ocellaris
ENSRNOG00000006961Snrpb7781.818ENSAPEG00000008846-8877.586Amphiprion_percula
ENSRNOG00000006961Snrpb7398.077ENSAPEG00000021585snrpb7194.643Amphiprion_percula
ENSRNOG00000006961Snrpb7398.077ENSATEG00000009836snrpb6994.048Anabas_testudineus
ENSRNOG00000006961Snrpb9295.305ENSACAG00000002053SNRPB9295.305Anolis_carolinensis
ENSRNOG00000006961Snrpb9993.043ENSANAG00000036271-7693.122Aotus_nancymaae
ENSRNOG00000006961Snrpb100100.000ENSANAG00000024443-100100.000Aotus_nancymaae
ENSRNOG00000006961Snrpb7398.077ENSACLG00000014707snrpb6994.643Astatotilapia_calliptera
ENSRNOG00000006961Snrpb7398.077ENSAMXG00000029434snrpb7094.048Astyanax_mexicanus
ENSRNOG00000006961Snrpb10099.567ENSBTAG00000001038SNRPB10099.567Bos_taurus
ENSRNOG00000006961Snrpb7376.923ENSBTAG00000024548-7474.545Bos_taurus
ENSRNOG00000006961Snrpb7394.231ENSCJAG00000041673-7194.545Callithrix_jacchus
ENSRNOG00000006961Snrpb100100.000ENSCJAG00000020971-100100.000Callithrix_jacchus
ENSRNOG00000006961Snrpb9392.056ENSCJAG00000023097-7992.063Callithrix_jacchus
ENSRNOG00000006961Snrpb8188.421ENSCAFG00000031109-7984.737Canis_familiaris
ENSRNOG00000006961Snrpb100100.000ENSCAFG00000006693-100100.000Canis_familiaris
ENSRNOG00000006961Snrpb6595.652ENSCAFG00020013247-6987.931Canis_lupus_dingo
ENSRNOG00000006961Snrpb99100.000ENSCAFG00020016981-95100.000Canis_lupus_dingo
ENSRNOG00000006961Snrpb6695.745ENSCAFG00020020370-6197.826Canis_lupus_dingo
ENSRNOG00000006961Snrpb9288.235ENSCAFG00020003638-8888.235Canis_lupus_dingo
ENSRNOG00000006961Snrpb5194.444ENSCAFG00020016234-7590.909Canis_lupus_dingo
ENSRNOG00000006961Snrpb10099.567ENSCHIG00000025449-10099.567Capra_hircus
ENSRNOG00000006961Snrpb7274.510ENSCHIG00000024610-7674.510Capra_hircus
ENSRNOG00000006961Snrpb9776.889ENSTSYG00000032303-5579.333Carlito_syrichta
ENSRNOG00000006961Snrpb100100.000ENSTSYG00000014498-100100.000Carlito_syrichta
ENSRNOG00000006961Snrpb99100.000ENSCAPG00000012669SNRPB100100.000Cavia_aperea
ENSRNOG00000006961Snrpb100100.000ENSCPOG00000039408SNRPB100100.000Cavia_porcellus
ENSRNOG00000006961Snrpb100100.000ENSCCAG00000026002SNRPB100100.000Cebus_capucinus
ENSRNOG00000006961Snrpb7286.275ENSCCAG00000035140-8986.275Cebus_capucinus
ENSRNOG00000006961Snrpb100100.000ENSCATG00000030230SNRPB100100.000Cercocebus_atys
ENSRNOG00000006961Snrpb98100.000ENSCLAG00000012442SNRPB95100.000Chinchilla_lanigera
ENSRNOG00000006961Snrpb100100.000ENSCSAG00000010840SNRPB100100.000Chlorocebus_sabaeus
ENSRNOG00000006961Snrpb9996.507ENSCPBG00000026801SNRPB9996.507Chrysemys_picta_bellii
ENSRNOG00000006961Snrpb100100.000ENSCANG00000019461SNRPB100100.000Colobus_angolensis_palliatus
ENSRNOG00000006961Snrpb100100.000ENSCGRG00001023046Snrpb100100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000006961Snrpb96100.000ENSCGRG00000010423Snrpb98100.000Cricetulus_griseus_crigri
ENSRNOG00000006961Snrpb73100.000ENSCSEG00000020328snrpb7094.643Cynoglossus_semilaevis
ENSRNOG00000006961Snrpb73100.000ENSDARG00000011125snrpb6994.643Danio_rerio
ENSRNOG00000006961Snrpb99100.000ENSDNOG00000015545-95100.000Dasypus_novemcinctus
ENSRNOG00000006961Snrpb7398.077ENSDNOG00000007896-7194.220Dasypus_novemcinctus
ENSRNOG00000006961Snrpb9799.552ENSDORG00000029558Snrpb9799.552Dipodomys_ordii
ENSRNOG00000006961Snrpb7670.370FBgn0262601SmB7470.470Drosophila_melanogaster
ENSRNOG00000006961Snrpb73100.000ENSETEG00000006830SNRPB7477.381Echinops_telfairi
ENSRNOG00000006961Snrpb7392.308ENSEBUG00000007467SNRPB6288.591Eptatretus_burgeri
ENSRNOG00000006961Snrpb10099.567ENSEASG00005012991SNRPB10099.567Equus_asinus_asinus
ENSRNOG00000006961Snrpb100100.000ENSECAG00000011944SNRPB100100.000Equus_caballus
ENSRNOG00000006961Snrpb98100.000ENSEEUG00000015568SNRPB80100.000Erinaceus_europaeus
ENSRNOG00000006961Snrpb7398.077ENSELUG00000014564snrpb7193.210Esox_lucius
ENSRNOG00000006961Snrpb7373.077ENSFCAG00000041049-6473.077Felis_catus
ENSRNOG00000006961Snrpb100100.000ENSFCAG00000034090-100100.000Felis_catus
ENSRNOG00000006961Snrpb7495.930ENSFALG00000004866SNRPB9295.775Ficedula_albicollis
ENSRNOG00000006961Snrpb100100.000ENSFDAG00000009937SNRPB100100.000Fukomys_damarensis
ENSRNOG00000006961Snrpb6676.596ENSFHEG00000006534-7863.768Fundulus_heteroclitus
ENSRNOG00000006961Snrpb9996.070ENSGALG00000035421SNRPN9596.070Gallus_gallus
ENSRNOG00000006961Snrpb7098.000ENSGAFG00000019558snrpb7294.012Gambusia_affinis
ENSRNOG00000006961Snrpb7398.077ENSGACG00000003262snrpb7094.643Gasterosteus_aculeatus
ENSRNOG00000006961Snrpb9996.507ENSGAGG00000001308SNRPB9596.507Gopherus_agassizii
ENSRNOG00000006961Snrpb100100.000ENSGGOG00000016138SNRPB100100.000Gorilla_gorilla
ENSRNOG00000006961Snrpb7398.077ENSHBUG00000008369snrpb6994.643Haplochromis_burtoni
ENSRNOG00000006961Snrpb100100.000ENSHGLG00000016241-100100.000Heterocephalus_glaber_female
ENSRNOG00000006961Snrpb7688.889ENSHGLG00000016505-7290.000Heterocephalus_glaber_female
ENSRNOG00000006961Snrpb100100.000ENSHGLG00100012877-100100.000Heterocephalus_glaber_male
ENSRNOG00000006961Snrpb7688.889ENSHGLG00100004178-7290.000Heterocephalus_glaber_male
ENSRNOG00000006961Snrpb7992.350ENSHCOG00000014888snrpb7094.643Hippocampus_comes
ENSRNOG00000006961Snrpb73100.000ENSIPUG00000024569SNRPB7094.643Ictalurus_punctatus
ENSRNOG00000006961Snrpb9481.944ENSSTOG00000027821-6299.265Ictidomys_tridecemlineatus
ENSRNOG00000006961Snrpb9998.253ENSSTOG00000033664-9598.253Ictidomys_tridecemlineatus
ENSRNOG00000006961Snrpb100100.000ENSJJAG00000024170Snrpb100100.000Jaculus_jaculus
ENSRNOG00000006961Snrpb73100.000ENSKMAG00000014494snrpb6895.238Kryptolebias_marmoratus
ENSRNOG00000006961Snrpb7992.350ENSLBEG00000005678snrpb7094.643Labrus_bergylta
ENSRNOG00000006961Snrpb9693.213ENSLACG00000011459SNRPB9293.213Latimeria_chalumnae
ENSRNOG00000006961Snrpb73100.000ENSLOCG00000002687snrpb7095.238Lepisosteus_oculatus
ENSRNOG00000006961Snrpb9996.053ENSLAFG00000017588SNRPB9996.053Loxodonta_africana
ENSRNOG00000006961Snrpb100100.000ENSMFAG00000038756SNRPB100100.000Macaca_fascicularis
ENSRNOG00000006961Snrpb100100.000ENSMMUG00000010050SNRPB100100.000Macaca_mulatta
ENSRNOG00000006961Snrpb100100.000ENSMNEG00000027954SNRPB100100.000Macaca_nemestrina
ENSRNOG00000006961Snrpb100100.000ENSMLEG00000022346SNRPB100100.000Mandrillus_leucophaeus
ENSRNOG00000006961Snrpb7892.778ENSMAMG00000009294snrpb6794.611Mastacembelus_armatus
ENSRNOG00000006961Snrpb7398.077ENSMZEG00005011856snrpb6994.643Maylandia_zebra
ENSRNOG00000006961Snrpb9483.582ENSMAUG00000006516-80100.000Mesocricetus_auratus
ENSRNOG00000006961Snrpb9989.744ENSMAUG00000020656-10089.744Mesocricetus_auratus
ENSRNOG00000006961Snrpb9785.333ENSMICG00000015983-8789.947Microcebus_murinus
ENSRNOG00000006961Snrpb10099.567ENSMICG00000016519SNRPB10099.567Microcebus_murinus
ENSRNOG00000006961Snrpb7392.308ENSMOCG00000021362-7273.410Microtus_ochrogaster
ENSRNOG00000006961Snrpb10099.567ENSMOCG00000002892-10099.567Microtus_ochrogaster
ENSRNOG00000006961Snrpb7992.857ENSMMOG00000013226snrpb7194.611Mola_mola
ENSRNOG00000006961Snrpb7398.077ENSMALG00000020839snrpb5694.048Monopterus_albus
ENSRNOG00000006961Snrpb10099.567MGP_CAROLIEiJ_G0024293Snrpb10099.567Mus_caroli
ENSRNOG00000006961Snrpb10099.567ENSMUSG00000027404Snrpb10099.567Mus_musculus
ENSRNOG00000006961Snrpb10099.567MGP_PahariEiJ_G0025738Snrpb10099.567Mus_pahari
ENSRNOG00000006961Snrpb10099.567MGP_SPRETEiJ_G0025213Snrpb10099.567Mus_spretus
ENSRNOG00000006961Snrpb100100.000ENSMPUG00000009283SNRPB100100.000Mustela_putorius_furo
ENSRNOG00000006961Snrpb9996.943ENSMLUG00000016951SNRPB9596.943Myotis_lucifugus
ENSRNOG00000006961Snrpb100100.000ENSNGAG00000012051Snrpb100100.000Nannospalax_galili
ENSRNOG00000006961Snrpb7890.055ENSNBRG00000006353snrpb6293.293Neolamprologus_brichardi
ENSRNOG00000006961Snrpb99100.000ENSNLEG00000029067SNRPB96100.000Nomascus_leucogenys
ENSRNOG00000006961Snrpb9797.333ENSMEUG00000015625SNRPB10097.333Notamacropus_eugenii
ENSRNOG00000006961Snrpb9896.460ENSODEG00000016060-9596.460Octodon_degus
ENSRNOG00000006961Snrpb100100.000ENSODEG00000004305-100100.000Octodon_degus
ENSRNOG00000006961Snrpb7398.077ENSONIG00000000248snrpb6994.643Oreochromis_niloticus
ENSRNOG00000006961Snrpb9271.831ENSOCUG00000026813-6370.946Oryctolagus_cuniculus
ENSRNOG00000006961Snrpb9996.943ENSOCUG00000028215-9596.943Oryctolagus_cuniculus
ENSRNOG00000006961Snrpb9999.563ENSOCUG00000014042-9599.563Oryctolagus_cuniculus
ENSRNOG00000006961Snrpb7793.296ENSOCUG00000022423-8696.429Oryctolagus_cuniculus
ENSRNOG00000006961Snrpb9394.884ENSOCUG00000021456-7895.767Oryctolagus_cuniculus
ENSRNOG00000006961Snrpb7398.077ENSORLG00000021862snrpb6994.643Oryzias_latipes
ENSRNOG00000006961Snrpb99100.000ENSOGAG00000016149SNRPB95100.000Otolemur_garnettii
ENSRNOG00000006961Snrpb10099.567ENSOARG00000006740SNRPB10099.567Ovis_aries
ENSRNOG00000006961Snrpb100100.000ENSPPAG00000036314SNRPB100100.000Pan_paniscus
ENSRNOG00000006961Snrpb9366.667ENSPPRG00000024804-7378.431Panthera_pardus
ENSRNOG00000006961Snrpb9960.000ENSPPRG00000018908-7077.419Panthera_pardus
ENSRNOG00000006961Snrpb100100.000ENSPPRG00000003233-100100.000Panthera_pardus
ENSRNOG00000006961Snrpb99100.000ENSPTIG00000007468SNRPB99100.000Panthera_tigris_altaica
ENSRNOG00000006961Snrpb100100.000ENSPTRG00000013176SNRPB100100.000Pan_troglodytes
ENSRNOG00000006961Snrpb99100.000ENSPANG00000020362SNRPB95100.000Papio_anubis
ENSRNOG00000006961Snrpb73100.000ENSPKIG00000002865snrpb7094.048Paramormyrops_kingsleyae
ENSRNOG00000006961Snrpb9996.491ENSPSIG00000014125SNRPB9496.491Pelodiscus_sinensis
ENSRNOG00000006961Snrpb7790.449ENSPMGG00000016349snrpb6992.025Periophthalmus_magnuspinnatus
ENSRNOG00000006961Snrpb100100.000ENSPEMG00000007948Snrpb100100.000Peromyscus_maniculatus_bairdii
ENSRNOG00000006961Snrpb7394.231ENSPMAG00000004923SNRPB10093.258Petromyzon_marinus
ENSRNOG00000006961Snrpb9997.807ENSPCIG00000004694SNRPB9597.807Phascolarctos_cinereus
ENSRNOG00000006961Snrpb7298.039ENSPFOG00000011802snrpb6395.973Poecilia_formosa
ENSRNOG00000006961Snrpb6597.826ENSPLAG00000014130snrpb5995.556Poecilia_latipinna
ENSRNOG00000006961Snrpb6597.826ENSPREG00000015515snrpb6295.556Poecilia_reticulata
ENSRNOG00000006961Snrpb100100.000ENSPPYG00000010841SNRPB100100.000Pongo_abelii
ENSRNOG00000006961Snrpb100100.000ENSPCOG00000013686SNRPB100100.000Propithecus_coquereli
ENSRNOG00000006961Snrpb9898.678ENSPVAG00000017013SNRPB8098.678Pteropus_vampyrus
ENSRNOG00000006961Snrpb7398.077ENSPNYG00000014788snrpb6994.643Pundamilia_nyererei
ENSRNOG00000006961Snrpb73100.000ENSPNAG00000016126snrpb7094.643Pygocentrus_nattereri
ENSRNOG00000006961Snrpb10099.567ENSRBIG00000040505SNRPB10099.567Rhinopithecus_bieti
ENSRNOG00000006961Snrpb100100.000ENSRROG00000036094SNRPB100100.000Rhinopithecus_roxellana
ENSRNOG00000006961Snrpb100100.000ENSSBOG00000027310SNRPB100100.000Saimiri_boliviensis_boliviensis
ENSRNOG00000006961Snrpb9998.253ENSSHAG00000010394SNRPB9598.253Sarcophilus_harrisii
ENSRNOG00000006961Snrpb73100.000ENSSFOG00015002870snrpb7093.452Scleropages_formosus
ENSRNOG00000006961Snrpb7398.077ENSSMAG00000006766snrpb7094.048Scophthalmus_maximus
ENSRNOG00000006961Snrpb7398.077ENSSDUG00000018539snrpb6994.643Seriola_dumerili
ENSRNOG00000006961Snrpb7398.077ENSSLDG00000022391snrpb6994.643Seriola_lalandi_dorsalis
ENSRNOG00000006961Snrpb72100.000ENSSARG00000003084SNRPB7484.884Sorex_araneus
ENSRNOG00000006961Snrpb9996.491ENSSPUG00000015659SNRPB9596.491Sphenodon_punctatus
ENSRNOG00000006961Snrpb7398.077ENSSPAG00000021992snrpb6994.643Stegastes_partitus
ENSRNOG00000006961Snrpb10099.567ENSSSCG00000040857-10099.567Sus_scrofa
ENSRNOG00000006961Snrpb10080.087ENSSSCG00000011966-9175.943Sus_scrofa
ENSRNOG00000006961Snrpb7298.039ENSTGUG00000005684SNRPB5996.429Taeniopygia_guttata
ENSRNOG00000006961Snrpb7398.077ENSTRUG00000023094snrpb7294.048Takifugu_rubripes
ENSRNOG00000006961Snrpb7398.077ENSTNIG00000002991snrpb7094.048Tetraodon_nigroviridis
ENSRNOG00000006961Snrpb7375.000ENSUAMG00000016301-7075.000Ursus_americanus
ENSRNOG00000006961Snrpb75100.000ENSUAMG00000005984-83100.000Ursus_americanus
ENSRNOG00000006961Snrpb7375.000ENSUMAG00000011571-6375.000Ursus_maritimus
ENSRNOG00000006961Snrpb6897.917ENSUMAG00000002123-6497.842Ursus_maritimus
ENSRNOG00000006961Snrpb72100.000ENSVVUG00000018297-5243.713Vulpes_vulpes
ENSRNOG00000006961Snrpb9999.563ENSVVUG00000025654-9599.563Vulpes_vulpes
ENSRNOG00000006961Snrpb9970.833ENSVVUG00000011423-9470.833Vulpes_vulpes
ENSRNOG00000006961Snrpb9779.736ENSVVUG00000010086-8581.122Vulpes_vulpes
ENSRNOG00000006961Snrpb8295.767ENSXETG00000027266snrpb7295.294Xenopus_tropicalis
ENSRNOG00000006961Snrpb5188.889ENSXCOG00000017217snrpb8989.333Xiphophorus_couchianus
ENSRNOG00000006961Snrpb6597.826ENSXMAG00000028767snrpb5895.556Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000387spliceosomal snRNP assembly-ISOProcess
GO:0000387spliceosomal snRNP assembly-ISSProcess
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISSProcess
GO:0003723RNA binding-IEAFunction
GO:0003723RNA binding-ISOFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005682U5 snRNP21873635.IBAComponent
GO:0005683U7 snRNP-ISOComponent
GO:0005683U7 snRNP-ISSComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP8371979.IDAComponent
GO:0005685U1 snRNP-ISOComponent
GO:0005685U1 snRNP-ISSComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0005686U2 snRNP8371979.IDAComponent
GO:0005687U4 snRNP21873635.IBAComponent
GO:0005687U4 snRNP-ISOComponent
GO:0005687U4 snRNP-ISSComponent
GO:0005689U12-type spliceosomal complex-ISOComponent
GO:0005697telomerase holoenzyme complex-ISOComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005829cytosol-ISSComponent
GO:0006479protein methylation-ISOProcess
GO:0007420brain development8462734.IEPProcess
GO:0034709methylosome-ISOComponent
GO:0034709methylosome-ISSComponent
GO:0034719SMN-Sm protein complex-ISOComponent
GO:0034719SMN-Sm protein complex-ISSComponent
GO:0046540U4/U6 x U5 tri-snRNP complex21873635.IBAComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISSComponent
GO:0070034telomerase RNA binding-ISOFunction
GO:0071004U2-type prespliceosome21873635.IBAComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071005U2-type precatalytic spliceosome-ISSComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISSComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0071204histone pre-mRNA 3'end processing complex-ISOComponent
GO:0071208histone pre-mRNA DCP binding-ISOFunction
GO:1990446U1 snRNP binding8371979.IDAFunction
GO:1990447U2 snRNP binding8371979.IDAFunction

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