EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000007240 (Gene tree)
Gene ID: 297784
Gene Symbol: Rrs1
Alias: LOC297784
Full Name: ribosome biogenesis regulator homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 1616 bases
Position: chr5:9430728-9432343
Accession: 1311403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000009482	RRS1	PF04939.12	3.7e-57	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000009482	-	1616	-	ENSRNOP00000009482	365 (aa)	-	A1A5P2

Gene Model

Click here to download ENSRNOG00000007240's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000007240's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000007240	Rrs1	100	91.507	ENSG00000179041	RRS1	100	91.507	Homo_sapiens
ENSRNOG00000007240	Rrs1	87	67.296	ENSATEG00000011743	rrs1	87	68.525	Anabas_testudineus
ENSRNOG00000007240	Rrs1	100	90.411	ENSANAG00000018116	RRS1	100	90.411	Aotus_nancymaae
ENSRNOG00000007240	Rrs1	86	65.397	ENSAMXG00000037893	rrs1	79	66.230	Astyanax_mexicanus
ENSRNOG00000007240	Rrs1	100	89.315	ENSBTAG00000016716	RRS1	100	89.315	Bos_taurus
ENSRNOG00000007240	Rrs1	70	44.528	WBGene00007617	rrbs-1	78	44.528	Caenorhabditis_elegans
ENSRNOG00000007240	Rrs1	100	90.411	ENSCJAG00000022034	RRS1	100	90.411	Callithrix_jacchus
ENSRNOG00000007240	Rrs1	100	89.589	ENSCAFG00000007313	RRS1	100	89.589	Canis_familiaris
ENSRNOG00000007240	Rrs1	100	89.589	ENSCAFG00020016049	-	100	89.589	Canis_lupus_dingo
ENSRNOG00000007240	Rrs1	100	89.589	ENSCAFG00020020365	-	100	89.589	Canis_lupus_dingo
ENSRNOG00000007240	Rrs1	100	89.863	ENSCHIG00000009141	RRS1	100	89.863	Capra_hircus
ENSRNOG00000007240	Rrs1	90	89.697	ENSCPOG00000000647	RRS1	100	86.575	Cavia_porcellus
ENSRNOG00000007240	Rrs1	100	90.411	ENSCCAG00000032186	RRS1	100	90.411	Cebus_capucinus
ENSRNOG00000007240	Rrs1	100	91.507	ENSCATG00000016944	RRS1	100	91.507	Cercocebus_atys
ENSRNOG00000007240	Rrs1	100	91.507	ENSCSAG00000018552	RRS1	100	91.507	Chlorocebus_sabaeus
ENSRNOG00000007240	Rrs1	87	94.006	ENSCHOG00000002455	RRS1	100	91.507	Choloepus_hoffmanni
ENSRNOG00000007240	Rrs1	87	65.951	ENSCPBG00000021374	RRS1	87	66.667	Chrysemys_picta_bellii
ENSRNOG00000007240	Rrs1	87	48.598	ENSCING00000002177	-	89	50.690	Ciona_intestinalis
ENSRNOG00000007240	Rrs1	87	47.368	ENSCSAVG00000011819	-	89	49.658	Ciona_savignyi
ENSRNOG00000007240	Rrs1	100	90.959	ENSCANG00000012718	RRS1	100	90.959	Colobus_angolensis_palliatus
ENSRNOG00000007240	Rrs1	100	91.781	ENSCGRG00001002391	-	100	91.781	Cricetulus_griseus_chok1gshd
ENSRNOG00000007240	Rrs1	98	89.916	ENSCGRG00001015575	-	99	89.356	Cricetulus_griseus_chok1gshd
ENSRNOG00000007240	Rrs1	82	55.814	ENSCSEG00000014750	rrs1	97	52.632	Cynoglossus_semilaevis
ENSRNOG00000007240	Rrs1	84	57.003	ENSCVAG00000017878	rrs1	98	52.732	Cyprinodon_variegatus
ENSRNOG00000007240	Rrs1	82	66.000	ENSDARG00000003941	rrs1	95	62.170	Danio_rerio
ENSRNOG00000007240	Rrs1	100	89.589	ENSDNOG00000017900	RRS1	99	89.589	Dasypus_novemcinctus
ENSRNOG00000007240	Rrs1	61	91.855	ENSDORG00000026331	Rrs1	100	86.617	Dipodomys_ordii
ENSRNOG00000007240	Rrs1	79	46.441	FBgn0052409	CG32409	84	46.441	Drosophila_melanogaster
ENSRNOG00000007240	Rrs1	55	84.577	ENSETEG00000000935	-	55	84.577	Echinops_telfairi
ENSRNOG00000007240	Rrs1	80	55.442	ENSEBUG00000013506	rrs1	95	54.737	Eptatretus_burgeri
ENSRNOG00000007240	Rrs1	100	90.685	ENSEASG00005001691	RRS1	100	90.685	Equus_asinus_asinus
ENSRNOG00000007240	Rrs1	100	83.562	ENSECAG00000004492	RRS1	100	83.562	Equus_caballus
ENSRNOG00000007240	Rrs1	100	89.041	ENSEEUG00000013719	RRS1	100	89.041	Erinaceus_europaeus
ENSRNOG00000007240	Rrs1	100	90.685	ENSFCAG00000014332	RRS1	100	90.685	Felis_catus
ENSRNOG00000007240	Rrs1	87	63.190	ENSGALG00000030890	RRS1	99	59.836	Gallus_gallus
ENSRNOG00000007240	Rrs1	82	63.455	ENSGACG00000002969	rrs1	99	58.791	Gasterosteus_aculeatus
ENSRNOG00000007240	Rrs1	87	64.832	ENSGAGG00000023718	RRS1	86	66.134	Gopherus_agassizii
ENSRNOG00000007240	Rrs1	100	92.329	ENSGGOG00000026663	RRS1	100	92.329	Gorilla_gorilla
ENSRNOG00000007240	Rrs1	100	88.767	ENSHGLG00000021423	RRS1	100	88.767	Heterocephalus_glaber_female
ENSRNOG00000007240	Rrs1	100	88.767	ENSHGLG00100020640	RRS1	100	88.767	Heterocephalus_glaber_male
ENSRNOG00000007240	Rrs1	99	61.496	ENSHCOG00000015358	rrs1	96	60.942	Hippocampus_comes
ENSRNOG00000007240	Rrs1	82	64.430	ENSIPUG00000014412	rrs1	98	58.242	Ictalurus_punctatus
ENSRNOG00000007240	Rrs1	100	93.151	ENSSTOG00000026310	RRS1	100	93.151	Ictidomys_tridecemlineatus
ENSRNOG00000007240	Rrs1	84	90.584	ENSJJAG00000011507	-	100	87.466	Jaculus_jaculus
ENSRNOG00000007240	Rrs1	76	81.720	ENSJJAG00000020395	-	100	71.311	Jaculus_jaculus
ENSRNOG00000007240	Rrs1	88	63.467	ENSKMAG00000008238	rrs1	99	59.615	Kryptolebias_marmoratus
ENSRNOG00000007240	Rrs1	85	68.065	ENSLACG00000004058	RRS1	93	67.857	Latimeria_chalumnae
ENSRNOG00000007240	Rrs1	84	68.852	ENSLOCG00000017812	rrs1	99	63.324	Lepisosteus_oculatus
ENSRNOG00000007240	Rrs1	87	92.429	ENSLAFG00000015405	RRS1	99	89.041	Loxodonta_africana
ENSRNOG00000007240	Rrs1	100	91.233	ENSMFAG00000042747	RRS1	100	91.233	Macaca_fascicularis
ENSRNOG00000007240	Rrs1	100	91.233	ENSMMUG00000000886	RRS1	100	91.233	Macaca_mulatta
ENSRNOG00000007240	Rrs1	100	91.233	ENSMNEG00000011696	RRS1	100	91.233	Macaca_nemestrina
ENSRNOG00000007240	Rrs1	100	91.507	ENSMLEG00000004794	RRS1	100	91.507	Mandrillus_leucophaeus
ENSRNOG00000007240	Rrs1	82	68.106	ENSMZEG00005004349	RRS1	85	67.752	Maylandia_zebra
ENSRNOG00000007240	Rrs1	100	94.247	ENSMAUG00000005392	Rrs1	100	94.247	Mesocricetus_auratus
ENSRNOG00000007240	Rrs1	94	93.605	ENSMOCG00000015862	Rrs1	89	93.605	Microtus_ochrogaster
ENSRNOG00000007240	Rrs1	90	77.744	ENSMODG00000024952	RRS1	99	73.995	Monodelphis_domestica
ENSRNOG00000007240	Rrs1	100	94.795	MGP_CAROLIEiJ_G0013936	Rrs1	100	94.795	Mus_caroli
ENSRNOG00000007240	Rrs1	100	95.068	ENSMUSG00000061024	Rrs1	100	95.068	Mus_musculus
ENSRNOG00000007240	Rrs1	100	94.521	MGP_PahariEiJ_G0023883	Rrs1	100	94.521	Mus_pahari
ENSRNOG00000007240	Rrs1	100	95.616	MGP_SPRETEiJ_G0014739	Rrs1	100	95.616	Mus_spretus
ENSRNOG00000007240	Rrs1	100	89.041	ENSMPUG00000018626	RRS1	98	89.041	Mustela_putorius_furo
ENSRNOG00000007240	Rrs1	100	91.781	ENSNGAG00000012904	Rrs1	100	91.781	Nannospalax_galili
ENSRNOG00000007240	Rrs1	88	85.139	ENSNLEG00000027730	RRS1	96	90.136	Nomascus_leucogenys
ENSRNOG00000007240	Rrs1	82	68.106	ENSONIG00000014187	rrs1	88	67.752	Oreochromis_niloticus
ENSRNOG00000007240	Rrs1	90	71.515	ENSOANG00000012348	RRS1	98	69.355	Ornithorhynchus_anatinus
ENSRNOG00000007240	Rrs1	90	91.212	ENSOCUG00000013490	RRS1	100	87.263	Oryctolagus_cuniculus
ENSRNOG00000007240	Rrs1	86	56.508	ENSOMEG00000008525	rrs1	99	52.632	Oryzias_melastigma
ENSRNOG00000007240	Rrs1	100	89.589	ENSOGAG00000001085	RRS1	100	89.589	Otolemur_garnettii
ENSRNOG00000007240	Rrs1	100	84.110	ENSOARG00000017417	RRS1	98	84.110	Ovis_aries
ENSRNOG00000007240	Rrs1	100	91.781	ENSPPAG00000024378	RRS1	100	91.781	Pan_paniscus
ENSRNOG00000007240	Rrs1	100	90.411	ENSPPRG00000021408	RRS1	100	90.411	Panthera_pardus
ENSRNOG00000007240	Rrs1	100	91.507	ENSPTRG00000030988	RRS1	100	91.507	Pan_troglodytes
ENSRNOG00000007240	Rrs1	100	66.027	ENSPANG00000035974	RRS1	100	66.575	Papio_anubis
ENSRNOG00000007240	Rrs1	82	66.667	ENSPKIG00000007953	rrs1	87	67.110	Paramormyrops_kingsleyae
ENSRNOG00000007240	Rrs1	100	92.603	ENSPEMG00000014427	Rrs1	100	92.603	Peromyscus_maniculatus_bairdii
ENSRNOG00000007240	Rrs1	82	59.532	ENSPMAG00000006513	rrs1	97	54.447	Petromyzon_marinus
ENSRNOG00000007240	Rrs1	84	80.844	ENSPCIG00000026695	RRS1	100	74.728	Phascolarctos_cinereus
ENSRNOG00000007240	Rrs1	82	68.896	ENSPFOG00000020722	rrs1	94	68.852	Poecilia_formosa
ENSRNOG00000007240	Rrs1	83	58.033	ENSPREG00000019960	rrs1	99	54.167	Poecilia_reticulata
ENSRNOG00000007240	Rrs1	81	94.949	ENSPPYG00000018637	RRS1	100	94.949	Pongo_abelii
ENSRNOG00000007240	Rrs1	90	90.909	ENSPCAG00000009115	RRS1	100	88.767	Procavia_capensis
ENSRNOG00000007240	Rrs1	80	67.466	ENSPNAG00000021707	rrs1	97	63.450	Pygocentrus_nattereri
ENSRNOG00000007240	Rrs1	100	90.959	ENSRBIG00000009132	RRS1	100	90.959	Rhinopithecus_bieti
ENSRNOG00000007240	Rrs1	100	90.959	ENSRROG00000013472	RRS1	100	90.959	Rhinopithecus_roxellana
ENSRNOG00000007240	Rrs1	100	87.397	ENSSBOG00000011006	-	100	86.575	Saimiri_boliviensis_boliviensis
ENSRNOG00000007240	Rrs1	100	86.575	ENSSBOG00000012639	-	100	87.397	Saimiri_boliviensis_boliviensis
ENSRNOG00000007240	Rrs1	80	54.949	ENSSFOG00015015772	rrs1	98	51.541	Scleropages_formosus
ENSRNOG00000007240	Rrs1	81	66.892	ENSSMAG00000015226	rrs1	95	60.615	Scophthalmus_maximus
ENSRNOG00000007240	Rrs1	82	84.831	ENSSARG00000006976	RRS1	82	84.831	Sorex_araneus
ENSRNOG00000007240	Rrs1	100	90.137	ENSSSCG00000006214	RRS1	100	90.137	Sus_scrofa
ENSRNOG00000007240	Rrs1	84	63.399	ENSTRUG00000008796	rrs1	96	61.905	Takifugu_rubripes
ENSRNOG00000007240	Rrs1	76	67.754	ENSTNIG00000004026	rrs1	99	64.307	Tetraodon_nigroviridis
ENSRNOG00000007240	Rrs1	100	90.411	ENSTBEG00000014752	RRS1	100	90.411	Tupaia_belangeri
ENSRNOG00000007240	Rrs1	100	90.685	ENSUAMG00000008502	RRS1	100	90.685	Ursus_americanus
ENSRNOG00000007240	Rrs1	100	89.863	ENSVVUG00000018452	RRS1	100	89.863	Vulpes_vulpes
ENSRNOG00000007240	Rrs1	82	68.562	ENSXCOG00000009809	rrs1	95	65.179	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	-	ISO	Process
GO:0000027	ribosomal large subunit assembly	-	ISS	Process
GO:0000055	ribosomal large subunit export from nucleus	21873635.	IBA	Process
GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000794	condensed nuclear chromosome	-	IEA	Component
GO:0000794	condensed nuclear chromosome	-	ISO	Component
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0002244	hematopoietic progenitor cell differentiation	-	IEA	Process
GO:0002244	hematopoietic progenitor cell differentiation	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0007080	mitotic metaphase plate congression	-	IEA	Process
GO:0007080	mitotic metaphase plate congression	-	ISO	Process
GO:0008097	5S rRNA binding	-	ISO	Function
GO:0008097	5S rRNA binding	-	ISS	Function
GO:0008150	biological_process	-	ND	Process
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process
GO:0042273	ribosomal large subunit biogenesis	-	ISO	Process
GO:1901796	regulation of signal transduction by p53 class mediator	-	ISO	Process
GO:1901796	regulation of signal transduction by p53 class mediator	-	ISS	Process
GO:1902570	protein localization to nucleolus	-	ISO	Process
GO:1902570	protein localization to nucleolus	-	ISS	Process