EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000007416 (Gene tree)
Gene ID: 311166
Gene Symbol: Clp1
Alias: Heab|LOC311166|MGC94928|RGD1307679
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 3701 bases
Position: chr3:72125273-72128973
Accession: 1307679
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000009726	Clp1	PF06807.14	1.2e-30	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000009726	-	1805	XM_006234461	ENSRNOP00000009726	425 (aa)	XP_006234524	Q5PQL4

Gene Model

Click here to download ENSRNOG00000007416's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000007416's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000007416	Clp1	100	98.588	ENSG00000172409	CLP1	100	98.588	Homo_sapiens
ENSRNOG00000007416	Clp1	98	76.415	ENSAPOG00000008242	clp1	96	76.415	Acanthochromis_polyacanthus
ENSRNOG00000007416	Clp1	100	99.059	ENSAMEG00000014551	CLP1	98	99.059	Ailuropoda_melanoleuca
ENSRNOG00000007416	Clp1	99	74.769	ENSACIG00000006310	clp1	97	74.769	Amphilophus_citrinellus
ENSRNOG00000007416	Clp1	100	75.520	ENSAOCG00000010681	clp1	100	75.520	Amphiprion_ocellaris
ENSRNOG00000007416	Clp1	99	75.463	ENSAPEG00000012165	clp1	99	76.415	Amphiprion_percula
ENSRNOG00000007416	Clp1	99	75.694	ENSATEG00000012374	clp1	98	75.694	Anabas_testudineus
ENSRNOG00000007416	Clp1	100	93.412	ENSACAG00000007139	CLP1	100	93.412	Anolis_carolinensis
ENSRNOG00000007416	Clp1	100	98.588	ENSANAG00000034935	CLP1	100	98.588	Aotus_nancymaae
ENSRNOG00000007416	Clp1	99	74.769	ENSACLG00000013573	clp1	98	74.769	Astatotilapia_calliptera
ENSRNOG00000007416	Clp1	100	77.367	ENSAMXG00000014194	clp1	100	77.367	Astyanax_mexicanus
ENSRNOG00000007416	Clp1	100	99.059	ENSBTAG00000006493	CLP1	100	99.059	Bos_taurus
ENSRNOG00000007416	Clp1	99	47.209	WBGene00010304	clpf-1	99	47.209	Caenorhabditis_elegans
ENSRNOG00000007416	Clp1	100	98.588	ENSCJAG00000008748	CLP1	100	98.588	Callithrix_jacchus
ENSRNOG00000007416	Clp1	100	99.059	ENSCAFG00000007815	CLP1	100	99.059	Canis_familiaris
ENSRNOG00000007416	Clp1	100	99.059	ENSCAFG00020000903	CLP1	100	99.059	Canis_lupus_dingo
ENSRNOG00000007416	Clp1	100	98.353	ENSCHIG00000023497	CLP1	100	98.353	Capra_hircus
ENSRNOG00000007416	Clp1	100	98.588	ENSTSYG00000006824	CLP1	99	98.588	Carlito_syrichta
ENSRNOG00000007416	Clp1	100	98.824	ENSCAPG00000009703	CLP1	100	98.824	Cavia_aperea
ENSRNOG00000007416	Clp1	98	99.038	ENSCPOG00000012554	CLP1	99	99.038	Cavia_porcellus
ENSRNOG00000007416	Clp1	100	98.353	ENSCCAG00000031957	CLP1	100	98.353	Cebus_capucinus
ENSRNOG00000007416	Clp1	100	98.588	ENSCATG00000044628	CLP1	100	98.588	Cercocebus_atys
ENSRNOG00000007416	Clp1	100	98.824	ENSCLAG00000004094	CLP1	100	98.824	Chinchilla_lanigera
ENSRNOG00000007416	Clp1	100	98.588	ENSCSAG00000005994	CLP1	100	98.588	Chlorocebus_sabaeus
ENSRNOG00000007416	Clp1	100	94.118	ENSCPBG00000016843	CLP1	100	94.118	Chrysemys_picta_bellii
ENSRNOG00000007416	Clp1	99	63.270	ENSCING00000003779	-	98	63.270	Ciona_intestinalis
ENSRNOG00000007416	Clp1	99	63.121	ENSCSAVG00000003437	-	99	63.121	Ciona_savignyi
ENSRNOG00000007416	Clp1	100	98.588	ENSCANG00000034335	CLP1	100	98.588	Colobus_angolensis_palliatus
ENSRNOG00000007416	Clp1	100	99.294	ENSCGRG00001002227	CLP1	100	99.294	Cricetulus_griseus_chok1gshd
ENSRNOG00000007416	Clp1	100	99.294	ENSCGRG00000004328	CLP1	100	99.294	Cricetulus_griseus_crigri
ENSRNOG00000007416	Clp1	99	74.014	ENSCSEG00000008614	clp1	98	74.014	Cynoglossus_semilaevis
ENSRNOG00000007416	Clp1	99	75.231	ENSCVAG00000020101	clp1	98	75.231	Cyprinodon_variegatus
ENSRNOG00000007416	Clp1	97	79.475	ENSDARG00000063663	clp1	95	79.475	Danio_rerio
ENSRNOG00000007416	Clp1	99	98.585	ENSDNOG00000042415	CLP1	90	98.585	Dasypus_novemcinctus
ENSRNOG00000007416	Clp1	100	99.059	ENSDORG00000014685	Clp1	100	99.059	Dipodomys_ordii
ENSRNOG00000007416	Clp1	99	55.634	FBgn0033842	cbc	99	55.634	Drosophila_melanogaster
ENSRNOG00000007416	Clp1	100	98.824	ENSETEG00000003009	CLP1	100	98.824	Echinops_telfairi
ENSRNOG00000007416	Clp1	97	72.397	ENSEBUG00000011648	clp1	97	72.397	Eptatretus_burgeri
ENSRNOG00000007416	Clp1	100	98.353	ENSEASG00005002093	CLP1	100	98.353	Equus_asinus_asinus
ENSRNOG00000007416	Clp1	100	98.353	ENSECAG00000011597	CLP1	100	98.353	Equus_caballus
ENSRNOG00000007416	Clp1	100	97.882	ENSEEUG00000012771	CLP1	100	97.882	Erinaceus_europaeus
ENSRNOG00000007416	Clp1	97	79.097	ENSELUG00000024048	clp1	95	79.097	Esox_lucius
ENSRNOG00000007416	Clp1	100	98.824	ENSFCAG00000006633	CLP1	100	98.824	Felis_catus
ENSRNOG00000007416	Clp1	100	91.765	ENSFALG00000011145	CLP1	100	91.765	Ficedula_albicollis
ENSRNOG00000007416	Clp1	100	98.824	ENSFDAG00000000234	CLP1	100	98.824	Fukomys_damarensis
ENSRNOG00000007416	Clp1	99	74.537	ENSFHEG00000014760	CLP1	98	74.537	Fundulus_heteroclitus
ENSRNOG00000007416	Clp1	97	79.426	ENSGMOG00000019340	clp1	95	79.426	Gadus_morhua
ENSRNOG00000007416	Clp1	100	92.471	ENSGALG00000007370	CLP1	100	92.471	Gallus_gallus
ENSRNOG00000007416	Clp1	99	75.000	ENSGAFG00000003020	clp1	99	75.000	Gambusia_affinis
ENSRNOG00000007416	Clp1	99	76.389	ENSGACG00000017832	clp1	98	76.389	Gasterosteus_aculeatus
ENSRNOG00000007416	Clp1	100	93.882	ENSGAGG00000013279	CLP1	100	93.882	Gopherus_agassizii
ENSRNOG00000007416	Clp1	100	98.588	ENSGGOG00000023006	CLP1	100	98.588	Gorilla_gorilla
ENSRNOG00000007416	Clp1	99	74.769	ENSHBUG00000010436	clp1	98	74.769	Haplochromis_burtoni
ENSRNOG00000007416	Clp1	100	98.824	ENSHGLG00000009914	CLP1	100	98.824	Heterocephalus_glaber_female
ENSRNOG00000007416	Clp1	100	98.824	ENSHGLG00100006105	CLP1	100	98.824	Heterocephalus_glaber_male
ENSRNOG00000007416	Clp1	99	76.322	ENSHCOG00000010072	clp1	99	76.322	Hippocampus_comes
ENSRNOG00000007416	Clp1	97	79.286	ENSIPUG00000016238	clp1	94	79.097	Ictalurus_punctatus
ENSRNOG00000007416	Clp1	100	98.824	ENSSTOG00000029257	CLP1	100	98.824	Ictidomys_tridecemlineatus
ENSRNOG00000007416	Clp1	100	98.353	ENSJJAG00000023691	Clp1	100	98.353	Jaculus_jaculus
ENSRNOG00000007416	Clp1	99	74.537	ENSKMAG00000011990	clp1	98	74.537	Kryptolebias_marmoratus
ENSRNOG00000007416	Clp1	99	75.926	ENSLBEG00000010201	clp1	98	75.926	Labrus_bergylta
ENSRNOG00000007416	Clp1	100	85.176	ENSLACG00000003160	CLP1	100	85.176	Latimeria_chalumnae
ENSRNOG00000007416	Clp1	73	76.708	ENSLOCG00000008074	clp1	100	77.640	Lepisosteus_oculatus
ENSRNOG00000007416	Clp1	100	98.588	ENSLAFG00000014907	CLP1	100	98.588	Loxodonta_africana
ENSRNOG00000007416	Clp1	100	98.588	ENSMFAG00000046074	CLP1	100	98.588	Macaca_fascicularis
ENSRNOG00000007416	Clp1	100	98.588	ENSMMUG00000038007	CLP1	99	98.588	Macaca_mulatta
ENSRNOG00000007416	Clp1	100	98.588	ENSMNEG00000000259	CLP1	100	98.588	Macaca_nemestrina
ENSRNOG00000007416	Clp1	100	98.588	ENSMLEG00000043556	CLP1	100	98.588	Mandrillus_leucophaeus
ENSRNOG00000007416	Clp1	100	75.289	ENSMAMG00000002149	clp1	98	75.289	Mastacembelus_armatus
ENSRNOG00000007416	Clp1	99	74.769	ENSMZEG00005002850	clp1	98	74.769	Maylandia_zebra
ENSRNOG00000007416	Clp1	100	92.471	ENSMGAG00000009643	CLP1	100	92.471	Meleagris_gallopavo
ENSRNOG00000007416	Clp1	100	98.588	ENSMAUG00000016261	Clp1	100	98.588	Mesocricetus_auratus
ENSRNOG00000007416	Clp1	100	99.059	ENSMICG00000004895	CLP1	100	99.059	Microcebus_murinus
ENSRNOG00000007416	Clp1	100	99.529	ENSMOCG00000005498	Clp1	100	99.529	Microtus_ochrogaster
ENSRNOG00000007416	Clp1	99	76.852	ENSMMOG00000003229	clp1	98	76.852	Mola_mola
ENSRNOG00000007416	Clp1	100	97.647	ENSMODG00000024148	-	100	97.647	Monodelphis_domestica
ENSRNOG00000007416	Clp1	100	97.647	ENSMODG00000020107	-	100	97.647	Monodelphis_domestica
ENSRNOG00000007416	Clp1	100	74.596	ENSMALG00000014239	clp1	98	74.596	Monopterus_albus
ENSRNOG00000007416	Clp1	100	100.000	MGP_CAROLIEiJ_G0023726	Clp1	100	100.000	Mus_caroli
ENSRNOG00000007416	Clp1	100	100.000	ENSMUSG00000027079	Clp1	100	100.000	Mus_musculus
ENSRNOG00000007416	Clp1	100	99.765	MGP_PahariEiJ_G0025177	Clp1	100	99.765	Mus_pahari
ENSRNOG00000007416	Clp1	100	100.000	MGP_SPRETEiJ_G0024646	Clp1	100	100.000	Mus_spretus
ENSRNOG00000007416	Clp1	100	99.059	ENSMPUG00000000268	CLP1	100	99.059	Mustela_putorius_furo
ENSRNOG00000007416	Clp1	100	98.588	ENSMLUG00000007904	CLP1	100	98.588	Myotis_lucifugus
ENSRNOG00000007416	Clp1	100	98.824	ENSNGAG00000006165	Clp1	100	98.824	Nannospalax_galili
ENSRNOG00000007416	Clp1	99	74.769	ENSNBRG00000005225	clp1	98	74.769	Neolamprologus_brichardi
ENSRNOG00000007416	Clp1	82	93.939	ENSNLEG00000012809	-	100	93.939	Nomascus_leucogenys
ENSRNOG00000007416	Clp1	100	97.647	ENSMEUG00000010949	CLP1	99	97.647	Notamacropus_eugenii
ENSRNOG00000007416	Clp1	70	98.658	ENSOPRG00000007329	CLP1	100	98.658	Ochotona_princeps
ENSRNOG00000007416	Clp1	100	98.824	ENSODEG00000011410	CLP1	100	98.824	Octodon_degus
ENSRNOG00000007416	Clp1	99	74.537	ENSONIG00000005089	clp1	98	74.537	Oreochromis_niloticus
ENSRNOG00000007416	Clp1	100	98.824	ENSOCUG00000007045	CLP1	100	98.824	Oryctolagus_cuniculus
ENSRNOG00000007416	Clp1	99	74.074	ENSORLG00000003647	clp1	98	74.074	Oryzias_latipes
ENSRNOG00000007416	Clp1	99	73.843	ENSORLG00020016676	clp1	98	73.843	Oryzias_latipes_hni
ENSRNOG00000007416	Clp1	99	74.074	ENSORLG00015019484	clp1	98	74.074	Oryzias_latipes_hsok
ENSRNOG00000007416	Clp1	99	74.713	ENSOMEG00000021303	clp1	99	74.713	Oryzias_melastigma
ENSRNOG00000007416	Clp1	100	98.824	ENSOGAG00000004508	CLP1	100	98.824	Otolemur_garnettii
ENSRNOG00000007416	Clp1	100	97.412	ENSOARG00000010145	CLP1	98	97.412	Ovis_aries
ENSRNOG00000007416	Clp1	100	98.588	ENSPPAG00000041519	CLP1	100	98.588	Pan_paniscus
ENSRNOG00000007416	Clp1	100	98.824	ENSPPRG00000006135	CLP1	100	98.824	Panthera_pardus
ENSRNOG00000007416	Clp1	100	98.824	ENSPTIG00000015866	CLP1	100	98.824	Panthera_tigris_altaica
ENSRNOG00000007416	Clp1	100	98.588	ENSPTRG00000047318	CLP1	100	98.588	Pan_troglodytes
ENSRNOG00000007416	Clp1	100	98.588	ENSPANG00000017078	CLP1	97	98.588	Papio_anubis
ENSRNOG00000007416	Clp1	97	80.145	ENSPKIG00000007697	clp1	94	80.145	Paramormyrops_kingsleyae
ENSRNOG00000007416	Clp1	95	91.542	ENSPSIG00000005468	CLP1	100	91.542	Pelodiscus_sinensis
ENSRNOG00000007416	Clp1	99	76.512	ENSPMGG00000012171	clp1	98	76.512	Periophthalmus_magnuspinnatus
ENSRNOG00000007416	Clp1	100	99.529	ENSPEMG00000011213	-	100	99.529	Peromyscus_maniculatus_bairdii
ENSRNOG00000007416	Clp1	100	76.291	ENSPMAG00000006707	clp1	100	76.291	Petromyzon_marinus
ENSRNOG00000007416	Clp1	100	97.176	ENSPCIG00000011899	CLP1	99	97.176	Phascolarctos_cinereus
ENSRNOG00000007416	Clp1	99	74.537	ENSPFOG00000008169	clp1	98	74.537	Poecilia_formosa
ENSRNOG00000007416	Clp1	99	74.537	ENSPLAG00000022388	clp1	99	74.478	Poecilia_latipinna
ENSRNOG00000007416	Clp1	99	74.537	ENSPMEG00000021088	clp1	99	74.478	Poecilia_mexicana
ENSRNOG00000007416	Clp1	99	74.769	ENSPREG00000017802	clp1	98	74.769	Poecilia_reticulata
ENSRNOG00000007416	Clp1	53	98.661	ENSPPYG00000003266	-	100	98.661	Pongo_abelii
ENSRNOG00000007416	Clp1	100	99.059	ENSPCOG00000000360	CLP1	98	99.059	Propithecus_coquereli
ENSRNOG00000007416	Clp1	100	99.059	ENSPVAG00000016270	CLP1	100	99.059	Pteropus_vampyrus
ENSRNOG00000007416	Clp1	99	74.769	ENSPNYG00000017274	clp1	97	74.769	Pundamilia_nyererei
ENSRNOG00000007416	Clp1	97	80.000	ENSPNAG00000026460	clp1	95	80.048	Pygocentrus_nattereri
ENSRNOG00000007416	Clp1	100	98.588	ENSRBIG00000018191	CLP1	100	98.588	Rhinopithecus_bieti
ENSRNOG00000007416	Clp1	100	98.588	ENSRROG00000039265	CLP1	100	98.588	Rhinopithecus_roxellana
ENSRNOG00000007416	Clp1	100	98.588	ENSSBOG00000032517	-	100	98.588	Saimiri_boliviensis_boliviensis
ENSRNOG00000007416	Clp1	96	79.064	ENSSBOG00000010558	-	93	79.064	Saimiri_boliviensis_boliviensis
ENSRNOG00000007416	Clp1	100	97.882	ENSSHAG00000015695	CLP1	100	97.882	Sarcophilus_harrisii
ENSRNOG00000007416	Clp1	97	78.824	ENSSFOG00015000628	clp1	96	78.824	Scleropages_formosus
ENSRNOG00000007416	Clp1	99	74.769	ENSSMAG00000019423	clp1	97	74.769	Scophthalmus_maximus
ENSRNOG00000007416	Clp1	99	76.157	ENSSDUG00000014495	clp1	98	76.157	Seriola_dumerili
ENSRNOG00000007416	Clp1	99	75.926	ENSSLDG00000000937	clp1	98	75.926	Seriola_lalandi_dorsalis
ENSRNOG00000007416	Clp1	52	98.206	ENSSARG00000002459	CLP1	100	98.206	Sorex_araneus
ENSRNOG00000007416	Clp1	100	92.706	ENSSPUG00000016811	CLP1	100	92.706	Sphenodon_punctatus
ENSRNOG00000007416	Clp1	99	75.000	ENSSPAG00000016052	clp1	98	75.000	Stegastes_partitus
ENSRNOG00000007416	Clp1	100	99.059	ENSSSCG00000031442	CLP1	100	99.059	Sus_scrofa
ENSRNOG00000007416	Clp1	100	91.529	ENSTGUG00000007002	CLP1	100	91.529	Taeniopygia_guttata
ENSRNOG00000007416	Clp1	99	76.168	ENSTRUG00000012602	clp1	98	76.168	Takifugu_rubripes
ENSRNOG00000007416	Clp1	99	75.701	ENSTNIG00000013125	clp1	98	75.701	Tetraodon_nigroviridis
ENSRNOG00000007416	Clp1	100	97.882	ENSTBEG00000009975	CLP1	100	97.882	Tupaia_belangeri
ENSRNOG00000007416	Clp1	100	98.588	ENSTTRG00000002096	CLP1	100	98.588	Tursiops_truncatus
ENSRNOG00000007416	Clp1	100	99.059	ENSUAMG00000011388	CLP1	100	99.059	Ursus_americanus
ENSRNOG00000007416	Clp1	100	99.059	ENSUMAG00000018317	CLP1	100	99.059	Ursus_maritimus
ENSRNOG00000007416	Clp1	100	99.059	ENSVVUG00000017138	CLP1	97	99.059	Vulpes_vulpes
ENSRNOG00000007416	Clp1	98	77.458	ENSXETG00000007088	clp1	95	78.177	Xenopus_tropicalis
ENSRNOG00000007416	Clp1	99	74.769	ENSXCOG00000002287	clp1	98	74.769	Xiphophorus_couchianus
ENSRNOG00000007416	Clp1	99	74.769	ENSXMAG00000009783	clp1	98	74.769	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000214	tRNA-intron endonuclease complex	-	ISO	Component
GO:0000214	tRNA-intron endonuclease complex	-	ISS	Component
GO:0003674	molecular_function	-	ND	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005849	mRNA cleavage factor complex	-	IEA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	21873635.	IBA	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISO	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISS	Process
GO:0008150	biological_process	-	ND	Process
GO:0016310	phosphorylation	-	IEA	Process
GO:0021695	cerebellar cortex development	-	ISO	Process
GO:0021695	cerebellar cortex development	-	ISS	Process
GO:0030423	targeting of mRNA for destruction involved in RNA interference	-	ISO	Process
GO:0030423	targeting of mRNA for destruction involved in RNA interference	-	ISS	Process
GO:0035087	siRNA loading onto RISC involved in RNA interference	-	ISO	Process
GO:0035087	siRNA loading onto RISC involved in RNA interference	-	ISS	Process
GO:0046404	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	-	IEA	Function
GO:0051733	polydeoxyribonucleotide kinase activity	-	ISO	Function
GO:0051733	polydeoxyribonucleotide kinase activity	-	ISS	Function
GO:0051736	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity	-	ISO	Function
GO:0051736	ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity	-	ISS	Function