EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000007520 (Gene tree)
Gene ID: 690005
Gene Symbol: Zcchc3
Alias: LOC690005
Full Name: zinc finger CCHC-type containing 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 1203 bases
Position: chr3:147878936-147880138
Accession: 1585203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000009859	zf-CCHC	PF00098.23	2.4e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000009859	-	1203	XM_001072887	ENSRNOP00000009859	400 (aa)	XP_001072887	D3ZZ10

Gene Model

Click here to download ENSRNOG00000007520's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000007520's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000007520	Zcchc3	100	83.951	ENSG00000247315	ZCCHC3	100	85.468	Homo_sapiens
ENSRNOG00000007520	Zcchc3	75	84.488	ENSAMEG00000013999	ZCCHC3	97	84.488	Ailuropoda_melanoleuca
ENSRNOG00000007520	Zcchc3	100	85.856	ENSANAG00000013484	ZCCHC3	100	85.856	Aotus_nancymaae
ENSRNOG00000007520	Zcchc3	61	31.429	ENSACLG00000024271	-	69	31.429	Astatotilapia_calliptera
ENSRNOG00000007520	Zcchc3	52	31.925	ENSACLG00000019767	-	50	31.925	Astatotilapia_calliptera
ENSRNOG00000007520	Zcchc3	77	30.864	ENSACLG00000026211	-	68	30.864	Astatotilapia_calliptera
ENSRNOG00000007520	Zcchc3	68	32.364	ENSAMXG00000037658	-	81	32.364	Astyanax_mexicanus
ENSRNOG00000007520	Zcchc3	58	31.466	ENSAMXG00000029829	-	56	31.466	Astyanax_mexicanus
ENSRNOG00000007520	Zcchc3	59	30.638	ENSAMXG00000035044	-	65	30.638	Astyanax_mexicanus
ENSRNOG00000007520	Zcchc3	52	30.806	ENSAMXG00000033087	-	63	30.806	Astyanax_mexicanus
ENSRNOG00000007520	Zcchc3	100	85.294	ENSBTAG00000002116	ZCCHC3	100	85.294	Bos_taurus
ENSRNOG00000007520	Zcchc3	100	84.119	ENSCJAG00000020839	ZCCHC3	100	85.360	Callithrix_jacchus
ENSRNOG00000007520	Zcchc3	61	96.735	ENSCAFG00000025206	ZCCHC3	98	89.781	Canis_familiaris
ENSRNOG00000007520	Zcchc3	100	83.333	ENSCAFG00020004076	ZCCHC3	100	85.784	Canis_lupus_dingo
ENSRNOG00000007520	Zcchc3	100	83.088	ENSCHIG00000009882	ZCCHC3	100	85.539	Capra_hircus
ENSRNOG00000007520	Zcchc3	100	79.302	ENSCPOG00000023974	ZCCHC3	100	80.050	Cavia_porcellus
ENSRNOG00000007520	Zcchc3	100	82.555	ENSCCAG00000016869	ZCCHC3	100	85.012	Cebus_capucinus
ENSRNOG00000007520	Zcchc3	100	85.149	ENSCATG00000022200	ZCCHC3	100	85.185	Cercocebus_atys
ENSRNOG00000007520	Zcchc3	100	84.406	ENSCLAG00000000269	ZCCHC3	100	84.901	Chinchilla_lanigera
ENSRNOG00000007520	Zcchc3	100	85.396	ENSCSAG00000018761	ZCCHC3	100	85.432	Chlorocebus_sabaeus
ENSRNOG00000007520	Zcchc3	66	93.962	ENSCANG00000010812	ZCCHC3	96	93.962	Colobus_angolensis_palliatus
ENSRNOG00000007520	Zcchc3	88	83.143	ENSCGRG00001011895	-	95	83.143	Cricetulus_griseus_chok1gshd
ENSRNOG00000007520	Zcchc3	100	90.594	ENSCGRG00001009163	-	100	90.594	Cricetulus_griseus_chok1gshd
ENSRNOG00000007520	Zcchc3	88	83.143	ENSCGRG00000008273	-	95	83.143	Cricetulus_griseus_crigri
ENSRNOG00000007520	Zcchc3	100	83.088	ENSDNOG00000047357	ZCCHC3	100	84.069	Dasypus_novemcinctus
ENSRNOG00000007520	Zcchc3	100	83.005	ENSEASG00005003629	ZCCHC3	100	85.714	Equus_asinus_asinus
ENSRNOG00000007520	Zcchc3	100	82.759	ENSECAG00000001035	ZCCHC3	100	85.468	Equus_caballus
ENSRNOG00000007520	Zcchc3	54	38.636	ENSELUG00000017799	-	70	38.636	Esox_lucius
ENSRNOG00000007520	Zcchc3	100	82.968	ENSFCAG00000026760	ZCCHC3	100	84.915	Felis_catus
ENSRNOG00000007520	Zcchc3	83	97.475	ENSGGOG00000044213	ZCCHC3	100	97.475	Gorilla_gorilla
ENSRNOG00000007520	Zcchc3	62	32.422	ENSHBUG00000005879	-	93	32.422	Haplochromis_burtoni
ENSRNOG00000007520	Zcchc3	100	83.168	ENSHGLG00000019351	ZCCHC3	100	83.663	Heterocephalus_glaber_female
ENSRNOG00000007520	Zcchc3	65	87.218	ENSHGLG00100009699	ZCCHC3	83	82.292	Heterocephalus_glaber_male
ENSRNOG00000007520	Zcchc3	52	37.799	ENSIPUG00000000506	-	54	37.799	Ictalurus_punctatus
ENSRNOG00000007520	Zcchc3	100	82.195	ENSJJAG00000020375	Zcchc3	100	82.439	Jaculus_jaculus
ENSRNOG00000007520	Zcchc3	57	36.123	ENSLACG00000003445	-	56	36.123	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	59	37.607	ENSLACG00000002864	-	78	37.607	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	53	38.679	ENSLACG00000022551	-	55	38.679	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	53	38.389	ENSLACG00000003328	-	75	38.389	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	58	37.931	ENSLACG00000012103	-	68	37.931	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	58	37.826	ENSLACG00000002973	-	60	37.826	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	67	35.688	ENSLACG00000012216	-	85	35.688	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	53	36.667	ENSLACG00000000032	-	59	36.667	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	60	38.494	ENSLACG00000002300	-	72	38.494	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	57	40.708	ENSLACG00000022202	-	56	40.708	Latimeria_chalumnae
ENSRNOG00000007520	Zcchc3	60	30.738	ENSLOCG00000000227	-	76	30.738	Lepisosteus_oculatus
ENSRNOG00000007520	Zcchc3	56	33.186	ENSLOCG00000017623	-	90	33.186	Lepisosteus_oculatus
ENSRNOG00000007520	Zcchc3	65	92.453	ENSLAFG00000030593	ZCCHC3	97	93.962	Loxodonta_africana
ENSRNOG00000007520	Zcchc3	100	85.396	ENSMFAG00000044780	ZCCHC3	100	85.679	Macaca_fascicularis
ENSRNOG00000007520	Zcchc3	100	85.396	ENSMMUG00000038935	ZCCHC3	100	85.679	Macaca_mulatta
ENSRNOG00000007520	Zcchc3	100	85.396	ENSMNEG00000000405	ZCCHC3	100	85.679	Macaca_nemestrina
ENSRNOG00000007520	Zcchc3	61	31.837	ENSMZEG00005000499	-	69	31.837	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	53	31.163	ENSMZEG00005025869	-	51	31.163	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	54	31.364	ENSMZEG00005008237	-	61	31.364	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	59	30.962	ENSMZEG00005000211	-	58	30.962	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	50	33.010	ENSMZEG00005024527	-	50	33.010	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	53	31.163	ENSMZEG00005025871	-	51	31.163	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	59	34.034	ENSMZEG00005021211	-	62	32.800	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	52	31.925	ENSMZEG00005028125	-	50	31.925	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	53	31.163	ENSMZEG00005025868	-	51	31.163	Maylandia_zebra
ENSRNOG00000007520	Zcchc3	100	84.901	ENSMICG00000031267	ZCCHC3	100	84.901	Microcebus_murinus
ENSRNOG00000007520	Zcchc3	100	91.750	ENSMOCG00000002870	Zcchc3	100	91.750	Microtus_ochrogaster
ENSRNOG00000007520	Zcchc3	56	34.361	ENSMMOG00000004516	-	68	34.802	Mola_mola
ENSRNOG00000007520	Zcchc3	100	95.250	MGP_CAROLIEiJ_G0024454	Zcchc3	100	95.250	Mus_caroli
ENSRNOG00000007520	Zcchc3	100	94.500	ENSMUSG00000074682	Zcchc3	100	94.500	Mus_musculus
ENSRNOG00000007520	Zcchc3	100	95.500	MGP_PahariEiJ_G0025898	Zcchc3	100	95.500	Mus_pahari
ENSRNOG00000007520	Zcchc3	100	94.750	MGP_SPRETEiJ_G0025375	Zcchc3	100	94.750	Mus_spretus
ENSRNOG00000007520	Zcchc3	100	84.750	ENSNGAG00000006074	Zcchc3	100	84.250	Nannospalax_galili
ENSRNOG00000007520	Zcchc3	54	32.727	ENSNBRG00000024091	-	60	32.727	Neolamprologus_brichardi
ENSRNOG00000007520	Zcchc3	100	80.198	ENSNLEG00000009533	ZCCHC3	100	81.436	Nomascus_leucogenys
ENSRNOG00000007520	Zcchc3	100	80.872	ENSOPRG00000005081	ZCCHC3	100	80.872	Ochotona_princeps
ENSRNOG00000007520	Zcchc3	100	83.251	ENSODEG00000010730	ZCCHC3	100	82.266	Octodon_degus
ENSRNOG00000007520	Zcchc3	100	80.446	ENSOCUG00000017024	ZCCHC3	100	80.693	Oryctolagus_cuniculus
ENSRNOG00000007520	Zcchc3	100	82.396	ENSOGAG00000025208	ZCCHC3	100	82.885	Otolemur_garnettii
ENSRNOG00000007520	Zcchc3	66	93.258	ENSOARG00000019161	ZCCHC3	100	89.384	Ovis_aries
ENSRNOG00000007520	Zcchc3	65	95.076	ENSPPAG00000010453	-	99	95.076	Pan_paniscus
ENSRNOG00000007520	Zcchc3	100	82.108	ENSPPRG00000014724	ZCCHC3	100	85.294	Panthera_pardus
ENSRNOG00000007520	Zcchc3	61	88.980	ENSPTIG00000009393	ZCCHC3	100	88.980	Panthera_tigris_altaica
ENSRNOG00000007520	Zcchc3	100	83.333	ENSPTRG00000047645	ZCCHC3	100	84.841	Pan_troglodytes
ENSRNOG00000007520	Zcchc3	100	85.396	ENSPANG00000013450	ZCCHC3	100	85.432	Papio_anubis
ENSRNOG00000007520	Zcchc3	100	83.704	ENSPEMG00000009059	Zcchc3	100	84.691	Peromyscus_maniculatus_bairdii
ENSRNOG00000007520	Zcchc3	90	79.891	ENSPCAG00000008034	ZCCHC3	100	79.946	Procavia_capensis
ENSRNOG00000007520	Zcchc3	100	84.406	ENSPCOG00000012289	ZCCHC3	100	84.406	Propithecus_coquereli
ENSRNOG00000007520	Zcchc3	100	84.275	ENSPVAG00000000182	ZCCHC3	100	84.275	Pteropus_vampyrus
ENSRNOG00000007520	Zcchc3	52	31.308	ENSPNYG00000003800	-	51	31.308	Pundamilia_nyererei
ENSRNOG00000007520	Zcchc3	100	85.644	ENSRBIG00000029757	ZCCHC3	100	85.432	Rhinopithecus_bieti
ENSRNOG00000007520	Zcchc3	100	85.644	ENSRROG00000005210	ZCCHC3	100	85.432	Rhinopithecus_roxellana
ENSRNOG00000007520	Zcchc3	100	85.468	ENSSSCG00000007211	ZCCHC3	100	83.824	Sus_scrofa
ENSRNOG00000007520	Zcchc3	100	84.314	ENSTTRG00000008511	ZCCHC3	100	85.294	Tursiops_truncatus
ENSRNOG00000007520	Zcchc3	97	80.605	ENSUAMG00000023407	ZCCHC3	98	80.605	Ursus_americanus
ENSRNOG00000007520	Zcchc3	62	93.496	ENSVPAG00000011267	-	100	93.496	Vicugna_pacos
ENSRNOG00000007520	Zcchc3	76	33.882	ENSXETG00000033341	-	94	43.624	Xenopus_tropicalis
ENSRNOG00000007520	Zcchc3	75	33.333	ENSXETG00000005590	-	100	33.333	Xenopus_tropicalis
ENSRNOG00000007520	Zcchc3	53	35.185	ENSXCOG00000010666	-	57	35.185	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002218	activation of innate immune response	-	IEA	Process
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0003690	double-stranded DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0009597	detection of virus	-	IEA	Process
GO:0009597	detection of virus	-	ISO	Process
GO:0032481	positive regulation of type I interferon production	-	IEA	Process
GO:0032481	positive regulation of type I interferon production	-	ISO	Process
GO:0051607	defense response to virus	-	IEA	Process
GO:0051607	defense response to virus	-	ISO	Process
GO:0071360	cellular response to exogenous dsRNA	-	IEA	Process
GO:0071360	cellular response to exogenous dsRNA	-	ISO	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	IEA	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	ISO	Process