EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000007548 (Gene tree)
Gene ID: 311487
Gene Symbol: Polr3f
Alias: LOC311487
Full Name: RNA polymerase III subunit F
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 16371 bases
Position: chr3:138684685-138701055
Accession: 1306428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000010468	RNA_pol_Rpc34	PF05158.12	2.4e-105	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000010468	-	4598	XM_008762269	ENSRNOP00000010468	371 (aa)	-	D3ZQ56

Gene Model

Click here to download ENSRNOG00000007548's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03020	RNA polymerase	KEGG
rno04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000007548's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000007548	Polr3f	85	99.051	ENSG00000132664	POLR3F	100	99.051	Homo_sapiens
ENSRNOG00000007548	Polr3f	85	84.810	ENSAPOG00000008271	polr3f	100	84.810	Acanthochromis_polyacanthus
ENSRNOG00000007548	Polr3f	85	98.734	ENSAMEG00000005222	POLR3F	100	98.734	Ailuropoda_melanoleuca
ENSRNOG00000007548	Polr3f	85	79.747	ENSACIG00000006705	polr3f	100	79.747	Amphilophus_citrinellus
ENSRNOG00000007548	Polr3f	85	85.443	ENSAOCG00000000687	polr3f	100	85.443	Amphiprion_ocellaris
ENSRNOG00000007548	Polr3f	85	85.127	ENSAPEG00000015263	polr3f	100	85.127	Amphiprion_percula
ENSRNOG00000007548	Polr3f	74	89.091	ENSATEG00000015539	polr3f	100	89.091	Anabas_testudineus
ENSRNOG00000007548	Polr3f	74	94.909	ENSAPLG00000005533	POLR3F	100	94.909	Anas_platyrhynchos
ENSRNOG00000007548	Polr3f	82	92.079	ENSACAG00000014293	POLR3F	98	92.079	Anolis_carolinensis
ENSRNOG00000007548	Polr3f	85	98.734	ENSANAG00000026726	POLR3F	100	98.734	Aotus_nancymaae
ENSRNOG00000007548	Polr3f	85	86.076	ENSACLG00000003615	polr3f	100	86.076	Astatotilapia_calliptera
ENSRNOG00000007548	Polr3f	85	86.709	ENSAMXG00000036020	polr3f	100	86.709	Astyanax_mexicanus
ENSRNOG00000007548	Polr3f	85	98.418	ENSBTAG00000008825	POLR3F	100	98.418	Bos_taurus
ENSRNOG00000007548	Polr3f	80	33.445	WBGene00021112	W09C3.4	95	33.445	Caenorhabditis_elegans
ENSRNOG00000007548	Polr3f	85	98.734	ENSCJAG00000005159	POLR3F	100	98.734	Callithrix_jacchus
ENSRNOG00000007548	Polr3f	85	98.418	ENSCAFG00000005420	POLR3F	100	98.418	Canis_familiaris
ENSRNOG00000007548	Polr3f	85	98.418	ENSCAFG00020027500	POLR3F	100	98.418	Canis_lupus_dingo
ENSRNOG00000007548	Polr3f	85	98.418	ENSCHIG00000014743	POLR3F	100	98.418	Capra_hircus
ENSRNOG00000007548	Polr3f	85	98.101	ENSTSYG00000004207	POLR3F	100	98.101	Carlito_syrichta
ENSRNOG00000007548	Polr3f	80	55.068	ENSCAPG00000008423	POLR3F	100	55.068	Cavia_aperea
ENSRNOG00000007548	Polr3f	85	98.101	ENSCPOG00000002400	POLR3F	100	98.101	Cavia_porcellus
ENSRNOG00000007548	Polr3f	85	87.975	ENSCCAG00000021800	POLR3F	100	87.975	Cebus_capucinus
ENSRNOG00000007548	Polr3f	85	98.734	ENSCATG00000019507	POLR3F	100	98.734	Cercocebus_atys
ENSRNOG00000007548	Polr3f	85	98.101	ENSCLAG00000016296	POLR3F	100	98.101	Chinchilla_lanigera
ENSRNOG00000007548	Polr3f	85	98.734	ENSCSAG00000011513	POLR3F	100	98.734	Chlorocebus_sabaeus
ENSRNOG00000007548	Polr3f	63	98.601	ENSCHOG00000013268	POLR3F	73	98.601	Choloepus_hoffmanni
ENSRNOG00000007548	Polr3f	74	93.455	ENSCPBG00000023473	POLR3F	100	93.455	Chrysemys_picta_bellii
ENSRNOG00000007548	Polr3f	85	60.635	ENSCING00000001212	-	99	60.635	Ciona_intestinalis
ENSRNOG00000007548	Polr3f	60	59.193	ENSCSAVG00000003340	-	96	65.680	Ciona_savignyi
ENSRNOG00000007548	Polr3f	78	98.625	ENSCANG00000037390	POLR3F	100	98.625	Colobus_angolensis_palliatus
ENSRNOG00000007548	Polr3f	85	98.418	ENSCGRG00001002032	Polr3f	100	98.418	Cricetulus_griseus_chok1gshd
ENSRNOG00000007548	Polr3f	85	98.418	ENSCGRG00000010852	Polr3f	100	98.418	Cricetulus_griseus_crigri
ENSRNOG00000007548	Polr3f	85	83.861	ENSCSEG00000001247	polr3f	100	83.861	Cynoglossus_semilaevis
ENSRNOG00000007548	Polr3f	85	85.443	ENSCVAG00000007611	polr3f	100	85.443	Cyprinodon_variegatus
ENSRNOG00000007548	Polr3f	85	87.658	ENSDARG00000012572	polr3f	100	87.658	Danio_rerio
ENSRNOG00000007548	Polr3f	85	96.203	ENSDNOG00000010719	POLR3F	100	96.203	Dasypus_novemcinctus
ENSRNOG00000007548	Polr3f	85	99.051	ENSDORG00000016352	Polr3f	100	99.051	Dipodomys_ordii
ENSRNOG00000007548	Polr3f	81	49.667	FBgn0038951	CG5380	99	49.667	Drosophila_melanogaster
ENSRNOG00000007548	Polr3f	76	60.142	ENSETEG00000015485	-	100	60.142	Echinops_telfairi
ENSRNOG00000007548	Polr3f	91	70.796	ENSEBUG00000006783	polr3f	97	77.228	Eptatretus_burgeri
ENSRNOG00000007548	Polr3f	85	99.051	ENSEASG00005002022	POLR3F	100	99.051	Equus_asinus_asinus
ENSRNOG00000007548	Polr3f	85	99.051	ENSECAG00000009920	POLR3F	100	99.051	Equus_caballus
ENSRNOG00000007548	Polr3f	68	92.000	ENSEEUG00000000184	POLR3F	80	92.000	Erinaceus_europaeus
ENSRNOG00000007548	Polr3f	85	88.291	ENSELUG00000001558	polr3f	100	88.291	Esox_lucius
ENSRNOG00000007548	Polr3f	85	98.734	ENSFCAG00000013828	POLR3F	100	98.734	Felis_catus
ENSRNOG00000007548	Polr3f	74	94.545	ENSFALG00000007623	POLR3F	100	94.545	Ficedula_albicollis
ENSRNOG00000007548	Polr3f	85	97.785	ENSFDAG00000002528	POLR3F	100	97.785	Fukomys_damarensis
ENSRNOG00000007548	Polr3f	85	82.911	ENSFHEG00000006450	polr3f	100	82.911	Fundulus_heteroclitus
ENSRNOG00000007548	Polr3f	85	93.038	ENSGALG00000008749	POLR3F	100	93.038	Gallus_gallus
ENSRNOG00000007548	Polr3f	85	84.494	ENSGAFG00000003698	polr3f	100	84.494	Gambusia_affinis
ENSRNOG00000007548	Polr3f	85	92.405	ENSGAGG00000006151	POLR3F	100	92.405	Gopherus_agassizii
ENSRNOG00000007548	Polr3f	85	99.051	ENSGGOG00000011543	POLR3F	100	99.051	Gorilla_gorilla
ENSRNOG00000007548	Polr3f	85	86.392	ENSHBUG00000013806	polr3f	100	86.392	Haplochromis_burtoni
ENSRNOG00000007548	Polr3f	85	98.101	ENSHGLG00000011867	POLR3F	100	98.101	Heterocephalus_glaber_female
ENSRNOG00000007548	Polr3f	85	98.101	ENSHGLG00100012577	POLR3F	100	98.101	Heterocephalus_glaber_male
ENSRNOG00000007548	Polr3f	85	76.899	ENSHCOG00000011751	polr3f	100	76.899	Hippocampus_comes
ENSRNOG00000007548	Polr3f	84	86.817	ENSIPUG00000013347	polr3f	99	86.817	Ictalurus_punctatus
ENSRNOG00000007548	Polr3f	85	98.734	ENSSTOG00000013588	POLR3F	100	98.734	Ictidomys_tridecemlineatus
ENSRNOG00000007548	Polr3f	85	98.734	ENSJJAG00000017513	Polr3f	100	98.734	Jaculus_jaculus
ENSRNOG00000007548	Polr3f	74	81.455	ENSKMAG00000016495	polr3f	100	81.455	Kryptolebias_marmoratus
ENSRNOG00000007548	Polr3f	63	91.810	ENSLBEG00000011998	polr3f	100	91.810	Labrus_bergylta
ENSRNOG00000007548	Polr3f	85	88.924	ENSLACG00000009371	POLR3F	100	88.924	Latimeria_chalumnae
ENSRNOG00000007548	Polr3f	85	89.241	ENSLOCG00000015701	polr3f	100	89.241	Lepisosteus_oculatus
ENSRNOG00000007548	Polr3f	85	98.101	ENSLAFG00000004929	POLR3F	100	98.101	Loxodonta_africana
ENSRNOG00000007548	Polr3f	85	98.734	ENSMFAG00000002227	POLR3F	100	98.734	Macaca_fascicularis
ENSRNOG00000007548	Polr3f	74	98.545	ENSMMUG00000004143	POLR3F	100	98.545	Macaca_mulatta
ENSRNOG00000007548	Polr3f	85	98.734	ENSMNEG00000033404	POLR3F	100	98.734	Macaca_nemestrina
ENSRNOG00000007548	Polr3f	85	98.734	ENSMLEG00000021905	POLR3F	100	98.734	Mandrillus_leucophaeus
ENSRNOG00000007548	Polr3f	85	85.443	ENSMAMG00000017975	polr3f	100	85.443	Mastacembelus_armatus
ENSRNOG00000007548	Polr3f	85	86.392	ENSMZEG00005015134	polr3f	100	86.392	Maylandia_zebra
ENSRNOG00000007548	Polr3f	85	92.722	ENSMGAG00000006691	POLR3F	100	92.722	Meleagris_gallopavo
ENSRNOG00000007548	Polr3f	85	98.734	ENSMAUG00000020176	Polr3f	100	98.734	Mesocricetus_auratus
ENSRNOG00000007548	Polr3f	85	99.367	ENSMICG00000044519	POLR3F	100	99.367	Microcebus_murinus
ENSRNOG00000007548	Polr3f	85	98.418	ENSMOCG00000018352	Polr3f	100	98.418	Microtus_ochrogaster
ENSRNOG00000007548	Polr3f	80	87.205	ENSMMOG00000018477	polr3f	100	87.205	Mola_mola
ENSRNOG00000007548	Polr3f	85	97.152	ENSMODG00000005624	POLR3F	100	97.152	Monodelphis_domestica
ENSRNOG00000007548	Polr3f	85	86.392	ENSMALG00000006685	polr3f	100	86.392	Monopterus_albus
ENSRNOG00000007548	Polr3f	85	99.051	MGP_CAROLIEiJ_G0024385	Polr3f	100	99.051	Mus_caroli
ENSRNOG00000007548	Polr3f	85	99.051	ENSMUSG00000027427	Polr3f	100	99.051	Mus_musculus
ENSRNOG00000007548	Polr3f	85	99.051	MGP_PahariEiJ_G0025829	Polr3f	100	99.051	Mus_pahari
ENSRNOG00000007548	Polr3f	85	99.051	MGP_SPRETEiJ_G0025304	Polr3f	100	99.051	Mus_spretus
ENSRNOG00000007548	Polr3f	85	76.923	ENSMPUG00000001252	-	100	76.923	Mustela_putorius_furo
ENSRNOG00000007548	Polr3f	85	98.418	ENSMLUG00000014844	POLR3F	100	98.418	Myotis_lucifugus
ENSRNOG00000007548	Polr3f	85	98.101	ENSNGAG00000010898	Polr3f	100	98.101	Nannospalax_galili
ENSRNOG00000007548	Polr3f	85	86.709	ENSNBRG00000020796	polr3f	100	86.709	Neolamprologus_brichardi
ENSRNOG00000007548	Polr3f	85	99.051	ENSNLEG00000009778	POLR3F	100	99.051	Nomascus_leucogenys
ENSRNOG00000007548	Polr3f	80	90.847	ENSMEUG00000010320	POLR3F	100	90.847	Notamacropus_eugenii
ENSRNOG00000007548	Polr3f	85	95.886	ENSOPRG00000003385	POLR3F	100	95.886	Ochotona_princeps
ENSRNOG00000007548	Polr3f	85	97.785	ENSODEG00000011521	POLR3F	100	97.785	Octodon_degus
ENSRNOG00000007548	Polr3f	85	85.127	ENSONIG00000006858	polr3f	100	85.127	Oreochromis_niloticus
ENSRNOG00000007548	Polr3f	85	95.886	ENSOANG00000001253	POLR3F	100	95.886	Ornithorhynchus_anatinus
ENSRNOG00000007548	Polr3f	85	98.418	ENSOCUG00000015067	POLR3F	100	98.418	Oryctolagus_cuniculus
ENSRNOG00000007548	Polr3f	85	84.810	ENSORLG00000022412	polr3f	100	84.810	Oryzias_latipes
ENSRNOG00000007548	Polr3f	85	84.810	ENSORLG00020021944	polr3f	100	84.810	Oryzias_latipes_hni
ENSRNOG00000007548	Polr3f	85	97.785	ENSOGAG00000002916	POLR3F	100	97.785	Otolemur_garnettii
ENSRNOG00000007548	Polr3f	85	98.418	ENSOARG00000000315	-	100	98.418	Ovis_aries
ENSRNOG00000007548	Polr3f	85	62.025	ENSOARG00000008647	-	100	62.025	Ovis_aries
ENSRNOG00000007548	Polr3f	85	99.051	ENSPPAG00000036681	POLR3F	100	99.051	Pan_paniscus
ENSRNOG00000007548	Polr3f	85	98.734	ENSPPRG00000024604	POLR3F	100	98.734	Panthera_pardus
ENSRNOG00000007548	Polr3f	85	98.734	ENSPTIG00000020292	POLR3F	100	98.734	Panthera_tigris_altaica
ENSRNOG00000007548	Polr3f	85	99.051	ENSPTRG00000013287	POLR3F	100	99.051	Pan_troglodytes
ENSRNOG00000007548	Polr3f	85	98.734	ENSPANG00000025015	POLR3F	100	98.734	Papio_anubis
ENSRNOG00000007548	Polr3f	85	87.975	ENSPKIG00000004427	polr3f	100	87.975	Paramormyrops_kingsleyae
ENSRNOG00000007548	Polr3f	74	94.545	ENSPSIG00000016613	POLR3F	100	94.545	Pelodiscus_sinensis
ENSRNOG00000007548	Polr3f	85	53.292	ENSPMGG00000018350	polr3f	100	56.329	Periophthalmus_magnuspinnatus
ENSRNOG00000007548	Polr3f	85	98.734	ENSPEMG00000006966	Polr3f	100	98.734	Peromyscus_maniculatus_bairdii
ENSRNOG00000007548	Polr3f	85	79.747	ENSPMAG00000005530	polr3f	100	79.747	Petromyzon_marinus
ENSRNOG00000007548	Polr3f	85	97.476	ENSPCIG00000000908	POLR3F	85	97.476	Phascolarctos_cinereus
ENSRNOG00000007548	Polr3f	85	84.494	ENSPFOG00000018334	polr3f	100	84.494	Poecilia_formosa
ENSRNOG00000007548	Polr3f	85	84.494	ENSPLAG00000021803	polr3f	100	84.494	Poecilia_latipinna
ENSRNOG00000007548	Polr3f	85	84.494	ENSPMEG00000013150	polr3f	100	84.494	Poecilia_mexicana
ENSRNOG00000007548	Polr3f	85	84.494	ENSPREG00000005278	polr3f	100	84.494	Poecilia_reticulata
ENSRNOG00000007548	Polr3f	85	99.051	ENSPPYG00000010737	POLR3F	100	99.051	Pongo_abelii
ENSRNOG00000007548	Polr3f	56	98.333	ENSPCAG00000004893	POLR3F	71	98.333	Procavia_capensis
ENSRNOG00000007548	Polr3f	85	99.367	ENSPCOG00000004543	POLR3F	100	99.367	Propithecus_coquereli
ENSRNOG00000007548	Polr3f	85	98.418	ENSPVAG00000000403	POLR3F	100	98.418	Pteropus_vampyrus
ENSRNOG00000007548	Polr3f	85	86.392	ENSPNYG00000016276	polr3f	100	86.392	Pundamilia_nyererei
ENSRNOG00000007548	Polr3f	85	87.342	ENSPNAG00000005164	polr3f	100	87.342	Pygocentrus_nattereri
ENSRNOG00000007548	Polr3f	85	98.734	ENSRBIG00000021268	POLR3F	100	98.734	Rhinopithecus_bieti
ENSRNOG00000007548	Polr3f	85	98.734	ENSRROG00000039911	POLR3F	100	98.734	Rhinopithecus_roxellana
ENSRNOG00000007548	Polr3f	85	98.734	ENSSBOG00000018207	POLR3F	100	98.734	Saimiri_boliviensis_boliviensis
ENSRNOG00000007548	Polr3f	85	76.656	ENSSHAG00000018160	POLR3F	100	75.710	Sarcophilus_harrisii
ENSRNOG00000007548	Polr3f	85	88.608	ENSSFOG00015022433	polr3f	100	88.608	Scleropages_formosus
ENSRNOG00000007548	Polr3f	85	84.810	ENSSMAG00000021029	polr3f	100	84.810	Scophthalmus_maximus
ENSRNOG00000007548	Polr3f	85	76.582	ENSSDUG00000022435	polr3f	100	76.582	Seriola_dumerili
ENSRNOG00000007548	Polr3f	85	86.076	ENSSLDG00000012761	polr3f	100	86.076	Seriola_lalandi_dorsalis
ENSRNOG00000007548	Polr3f	85	88.608	ENSSARG00000006039	POLR3F	100	88.608	Sorex_araneus
ENSRNOG00000007548	Polr3f	85	93.354	ENSSPUG00000001873	POLR3F	100	93.354	Sphenodon_punctatus
ENSRNOG00000007548	Polr3f	85	77.848	ENSSPAG00000002092	polr3f	100	77.848	Stegastes_partitus
ENSRNOG00000007548	Polr3f	85	98.734	ENSSSCG00000007095	POLR3F	100	98.734	Sus_scrofa
ENSRNOG00000007548	Polr3f	85	92.405	ENSTGUG00000005839	POLR3F	100	92.405	Taeniopygia_guttata
ENSRNOG00000007548	Polr3f	85	84.177	ENSTRUG00000012101	polr3f	100	84.177	Takifugu_rubripes
ENSRNOG00000007548	Polr3f	85	83.544	ENSTNIG00000006456	polr3f	100	83.544	Tetraodon_nigroviridis
ENSRNOG00000007548	Polr3f	85	82.278	ENSTBEG00000007921	POLR3F	100	82.278	Tupaia_belangeri
ENSRNOG00000007548	Polr3f	85	98.418	ENSTTRG00000002580	POLR3F	100	98.418	Tursiops_truncatus
ENSRNOG00000007548	Polr3f	85	98.418	ENSUMAG00000024944	POLR3F	100	98.418	Ursus_maritimus
ENSRNOG00000007548	Polr3f	85	97.785	ENSVPAG00000009063	POLR3F	100	97.785	Vicugna_pacos
ENSRNOG00000007548	Polr3f	85	98.418	ENSVVUG00000012925	POLR3F	100	98.418	Vulpes_vulpes
ENSRNOG00000007548	Polr3f	85	88.608	ENSXETG00000024898	polr3f	100	88.608	Xenopus_tropicalis
ENSRNOG00000007548	Polr3f	74	86.909	ENSXCOG00000010301	polr3f	100	86.909	Xiphophorus_couchianus
ENSRNOG00000007548	Polr3f	85	84.810	ENSXMAG00000004604	polr3f	100	84.810	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003674	molecular_function	-	ND	Function
GO:0003690	double-stranded DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	-	ISO	Component
GO:0006383	transcription by RNA polymerase III	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0032728	positive regulation of interferon-beta production	-	IEA	Process
GO:0032728	positive regulation of interferon-beta production	-	ISO	Process
GO:0045089	positive regulation of innate immune response	-	IEA	Process
GO:0045089	positive regulation of innate immune response	-	ISO	Process