EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000007629 (Gene tree)
Gene ID
313583
Gene Symbol
Sf3a3
Alias
LOC313583|LRRGT00093|MGC116354
Full Name
splicing factor 3a%2C subunit 3
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
19657 bases
Position
chr5:142702685-142722341
Accession
1308726
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000072034SF3a60_bindingdPF12108.86.4e-1611
ENSRNOP00000072414SF3a60_bindingdPF12108.81.3e-1511
ENSRNOP00000010373SF3a60_bindingdPF12108.81.5e-1511
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000085986-2147-ENSRNOP00000072414459 (aa)-A0A0G2K2X3
ENSRNOT00000010373-1739-ENSRNOP00000010373501 (aa)-Q4KLI7
ENSRNOT00000087416-693-ENSRNOP00000072034230 (aa)-Q6TUF1
Gene Model
Click here to download ENSRNOG00000007629's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000007629's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000007629Sf3a310099.202ENSG00000183431SF3A310099.202Homo_sapiens
ENSRNOG00000007629Sf3a310091.816ENSAPOG00000015608sf3a310091.816Acanthochromis_polyacanthus
ENSRNOG00000007629Sf3a310099.202ENSAMEG00000001262SF3A310099.202Ailuropoda_melanoleuca
ENSRNOG00000007629Sf3a310090.850ENSACIG00000009061sf3a39985.207Amphilophus_citrinellus
ENSRNOG00000007629Sf3a310092.415ENSAOCG00000013954sf3a310092.415Amphiprion_ocellaris
ENSRNOG00000007629Sf3a310092.415ENSAPEG00000007297sf3a310092.415Amphiprion_percula
ENSRNOG00000007629Sf3a310091.218ENSATEG00000008754sf3a310091.218Anabas_testudineus
ENSRNOG00000007629Sf3a39497.228ENSAPLG00000014900SF3A310097.228Anas_platyrhynchos
ENSRNOG00000007629Sf3a310096.008ENSACAG00000017058SF3A310096.008Anolis_carolinensis
ENSRNOG00000007629Sf3a310076.647ENSANAG00000036903-10076.647Aotus_nancymaae
ENSRNOG00000007629Sf3a39994.980ENSANAG00000014878SF3A310094.980Aotus_nancymaae
ENSRNOG00000007629Sf3a310091.417ENSACLG00000017977sf3a310091.417Astatotilapia_calliptera
ENSRNOG00000007629Sf3a310091.417ENSAMXG00000016855sf3a38791.417Astyanax_mexicanus
ENSRNOG00000007629Sf3a310099.002ENSBTAG00000007299SF3A310099.002Bos_taurus
ENSRNOG00000007629Sf3a310052.087WBGene00011758T13H5.410052.087Caenorhabditis_elegans
ENSRNOG00000007629Sf3a310099.202ENSCJAG00000002176SF3A310099.202Callithrix_jacchus
ENSRNOG00000007629Sf3a310099.202ENSCAFG00000000683-10099.202Canis_familiaris
ENSRNOG00000007629Sf3a310099.202ENSCAFG00000003222-10099.202Canis_familiaris
ENSRNOG00000007629Sf3a310099.202ENSCAFG00020006186SF3A310099.202Canis_lupus_dingo
ENSRNOG00000007629Sf3a310099.002ENSCHIG00000020638SF3A310099.002Capra_hircus
ENSRNOG00000007629Sf3a310093.214ENSTSYG00000008417SF3A310093.214Carlito_syrichta
ENSRNOG00000007629Sf3a38465.491ENSCAPG00000003466SF3A310060.870Cavia_aperea
ENSRNOG00000007629Sf3a310099.401ENSCPOG00000008660SF3A310099.401Cavia_porcellus
ENSRNOG00000007629Sf3a310099.202ENSCCAG00000033732SF3A310099.202Cebus_capucinus
ENSRNOG00000007629Sf3a310071.173ENSCCAG00000034048-10066.998Cebus_capucinus
ENSRNOG00000007629Sf3a310073.506ENSCATG00000043537-10074.104Cercocebus_atys
ENSRNOG00000007629Sf3a310099.202ENSCATG00000043496SF3A310099.202Cercocebus_atys
ENSRNOG00000007629Sf3a39981.182ENSCATG00000041660-10081.876Cercocebus_atys
ENSRNOG00000007629Sf3a310099.601ENSCLAG00000010838SF3A310099.601Chinchilla_lanigera
ENSRNOG00000007629Sf3a39999.125ENSCSAG00000001120SF3A310099.160Chlorocebus_sabaeus
ENSRNOG00000007629Sf3a37898.621ENSCHOG00000006849SF3A37198.621Choloepus_hoffmanni
ENSRNOG00000007629Sf3a37766.759ENSCPBG00000007472-9566.575Chrysemys_picta_bellii
ENSRNOG00000007629Sf3a310088.423ENSCPBG00000018291-10088.423Chrysemys_picta_bellii
ENSRNOG00000007629Sf3a310067.729ENSCING00000002730-10067.729Ciona_intestinalis
ENSRNOG00000007629Sf3a310067.864ENSCSAVG00000005063-10067.864Ciona_savignyi
ENSRNOG00000007629Sf3a310099.202ENSCANG00000042083SF3A310099.202Colobus_angolensis_palliatus
ENSRNOG00000007629Sf3a310070.060ENSCANG00000035535-10070.060Colobus_angolensis_palliatus
ENSRNOG00000007629Sf3a3100100.000ENSCGRG00001011320Sf3a3100100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000007629Sf3a3100100.000ENSCGRG00000012156Sf3a3100100.000Cricetulus_griseus_crigri
ENSRNOG00000007629Sf3a310090.220ENSCSEG00000010401sf3a310090.220Cynoglossus_semilaevis
ENSRNOG00000007629Sf3a39489.552ENSCVAG00000010239sf3a39589.552Cyprinodon_variegatus
ENSRNOG00000007629Sf3a310090.818ENSDARG00000100114sf3a310091.408Danio_rerio
ENSRNOG00000007629Sf3a310099.129ENSDNOG00000046628SF3A310099.129Dasypus_novemcinctus
ENSRNOG00000007629Sf3a310099.202ENSDORG00000008798Sf3a310099.202Dipodomys_ordii
ENSRNOG00000007629Sf3a310064.822FBgn0014366noi10064.625Drosophila_melanogaster
ENSRNOG00000007629Sf3a310080.915ENSEBUG00000015411sf3a39281.511Eptatretus_burgeri
ENSRNOG00000007629Sf3a310099.202ENSEASG00005012906SF3A310099.202Equus_asinus_asinus
ENSRNOG00000007629Sf3a310099.202ENSECAG00000017333SF3A310099.202Equus_caballus
ENSRNOG00000007629Sf3a310089.222ENSELUG00000010024sf3a310089.222Esox_lucius
ENSRNOG00000007629Sf3a310099.202ENSFCAG00000027772SF3A310099.202Felis_catus
ENSRNOG00000007629Sf3a310096.607ENSFALG00000001003SF3A310096.607Ficedula_albicollis
ENSRNOG00000007629Sf3a310099.401ENSFDAG00000020908SF3A310099.401Fukomys_damarensis
ENSRNOG00000007629Sf3a310090.220ENSFHEG00000019107sf3a310090.220Fundulus_heteroclitus
ENSRNOG00000007629Sf3a310088.623ENSGMOG00000015540sf3a310088.623Gadus_morhua
ENSRNOG00000007629Sf3a310096.607ENSGALG00000001540SF3A310096.607Gallus_gallus
ENSRNOG00000007629Sf3a310090.419ENSGAFG00000002320sf3a310090.419Gambusia_affinis
ENSRNOG00000007629Sf3a310091.617ENSGACG00000007842sf3a310091.617Gasterosteus_aculeatus
ENSRNOG00000007629Sf3a310096.806ENSGAGG00000014980SF3A310096.806Gopherus_agassizii
ENSRNOG00000007629Sf3a310077.046ENSGGOG00000022611-10076.447Gorilla_gorilla
ENSRNOG00000007629Sf3a310099.202ENSGGOG00000013928SF3A310099.202Gorilla_gorilla
ENSRNOG00000007629Sf3a310091.417ENSHBUG00000018158sf3a310091.667Haplochromis_burtoni
ENSRNOG00000007629Sf3a310099.601ENSHGLG00000012502SF3A310099.601Heterocephalus_glaber_female
ENSRNOG00000007629Sf3a310099.601ENSHGLG00100010546SF3A310099.601Heterocephalus_glaber_male
ENSRNOG00000007629Sf3a310089.222ENSHCOG00000015109sf3a310089.222Hippocampus_comes
ENSRNOG00000007629Sf3a310090.619ENSIPUG00000011603sf3a310090.619Ictalurus_punctatus
ENSRNOG00000007629Sf3a310099.800ENSSTOG00000001691SF3A310099.800Ictidomys_tridecemlineatus
ENSRNOG00000007629Sf3a310099.601ENSJJAG00000012404Sf3a310099.601Jaculus_jaculus
ENSRNOG00000007629Sf3a310090.220ENSKMAG00000007632sf3a310090.220Kryptolebias_marmoratus
ENSRNOG00000007629Sf3a310083.466ENSLBEG00000000816sf3a310083.466Labrus_bergylta
ENSRNOG00000007629Sf3a310092.615ENSLOCG00000003273sf3a310092.615Lepisosteus_oculatus
ENSRNOG00000007629Sf3a310086.627ENSLAFG00000008094SF3A310086.627Loxodonta_africana
ENSRNOG00000007629Sf3a310099.202ENSMFAG00000043047SF3A310099.202Macaca_fascicularis
ENSRNOG00000007629Sf3a39980.963ENSMFAG00000036706-10081.663Macaca_fascicularis
ENSRNOG00000007629Sf3a310078.685ENSMMUG00000038820-10078.884Macaca_mulatta
ENSRNOG00000007629Sf3a310099.202ENSMMUG00000023199SF3A310099.202Macaca_mulatta
ENSRNOG00000007629Sf3a39977.899ENSMNEG00000028686-10078.678Macaca_nemestrina
ENSRNOG00000007629Sf3a310099.202ENSMNEG00000044291SF3A310099.202Macaca_nemestrina
ENSRNOG00000007629Sf3a310099.202ENSMLEG00000030641SF3A310099.202Mandrillus_leucophaeus
ENSRNOG00000007629Sf3a310082.834ENSMLEG00000036714-10083.034Mandrillus_leucophaeus
ENSRNOG00000007629Sf3a310072.709ENSMLEG00000028631-10073.307Mandrillus_leucophaeus
ENSRNOG00000007629Sf3a310091.816ENSMAMG00000001942sf3a310091.816Mastacembelus_armatus
ENSRNOG00000007629Sf3a310091.417ENSMZEG00005016987sf3a310091.417Maylandia_zebra
ENSRNOG00000007629Sf3a310091.252ENSMGAG00000002875SF3A310091.252Meleagris_gallopavo
ENSRNOG00000007629Sf3a310094.810ENSMICG00000001485-10094.810Microcebus_murinus
ENSRNOG00000007629Sf3a39996.937ENSMICG00000026541-10096.943Microcebus_murinus
ENSRNOG00000007629Sf3a310093.613ENSMICG00000043548-10093.613Microcebus_murinus
ENSRNOG00000007629Sf3a310096.208ENSMOCG00000019939-10096.208Microtus_ochrogaster
ENSRNOG00000007629Sf3a39592.842ENSMOCG00000014565-9792.842Microtus_ochrogaster
ENSRNOG00000007629Sf3a310091.617ENSMMOG00000014307sf3a310091.617Mola_mola
ENSRNOG00000007629Sf3a39980.128ENSMODG00000017729-10077.756Monodelphis_domestica
ENSRNOG00000007629Sf3a310091.218ENSMODG00000024045-10091.218Monodelphis_domestica
ENSRNOG00000007629Sf3a310091.018ENSMALG00000004836sf3a310091.447Monopterus_albus
ENSRNOG00000007629Sf3a3100100.000MGP_CAROLIEiJ_G0026449Sf3a3100100.000Mus_caroli
ENSRNOG00000007629Sf3a3100100.000ENSMUSG00000028902Sf3a3100100.000Mus_musculus
ENSRNOG00000007629Sf3a310094.212MGP_PahariEiJ_G0028780Sf3a310094.212Mus_pahari
ENSRNOG00000007629Sf3a3100100.000MGP_SPRETEiJ_G0027428Sf3a3100100.000Mus_spretus
ENSRNOG00000007629Sf3a310099.202ENSMLUG00000000991SF3A310099.202Myotis_lucifugus
ENSRNOG00000007629Sf3a310093.413ENSNGAG00000018032Sf3a310093.413Nannospalax_galili
ENSRNOG00000007629Sf3a36574.251ENSNBRG00000006491sf3a310086.413Neolamprologus_brichardi
ENSRNOG00000007629Sf3a310090.419ENSNLEG00000011720SF3A310090.419Nomascus_leucogenys
ENSRNOG00000007629Sf3a310099.601ENSOPRG00000012785SF3A310099.601Ochotona_princeps
ENSRNOG00000007629Sf3a310094.411ENSODEG00000007470-10094.411Octodon_degus
ENSRNOG00000007629Sf3a39988.428ENSODEG00000000937-10086.653Octodon_degus
ENSRNOG00000007629Sf3a310087.226ENSODEG00000018393-10087.026Octodon_degus
ENSRNOG00000007629Sf3a310096.407ENSODEG00000006854-10096.407Octodon_degus
ENSRNOG00000007629Sf3a38791.954ENSONIG00000010296sf3a310091.954Oreochromis_niloticus
ENSRNOG00000007629Sf3a39498.294ENSOANG00000002473SF3A310098.294Ornithorhynchus_anatinus
ENSRNOG00000007629Sf3a310099.601ENSOCUG00000005407SF3A310099.601Oryctolagus_cuniculus
ENSRNOG00000007629Sf3a310090.619ENSORLG00000008175sf3a310090.619Oryzias_latipes
ENSRNOG00000007629Sf3a310090.419ENSORLG00020013708sf3a310090.419Oryzias_latipes_hni
ENSRNOG00000007629Sf3a310090.419ENSORLG00015004104sf3a310090.419Oryzias_latipes_hsok
ENSRNOG00000007629Sf3a310090.619ENSOMEG00000020177sf3a310090.619Oryzias_melastigma
ENSRNOG00000007629Sf3a310099.002ENSOARG00000019950SF3A310099.002Ovis_aries
ENSRNOG00000007629Sf3a310076.447ENSPPAG00000039955-10075.848Pan_paniscus
ENSRNOG00000007629Sf3a310099.202ENSPPAG00000034066SF3A310099.202Pan_paniscus
ENSRNOG00000007629Sf3a310099.202ENSPPRG00000001258SF3A310099.202Panthera_pardus
ENSRNOG00000007629Sf3a310099.202ENSPTIG00000007515SF3A310099.202Panthera_tigris_altaica
ENSRNOG00000007629Sf3a310099.202ENSPTRG00000000559SF3A310099.202Pan_troglodytes
ENSRNOG00000007629Sf3a310077.246ENSPTRG00000046013-10076.647Pan_troglodytes
ENSRNOG00000007629Sf3a310085.828ENSPANG00000029393-10086.028Papio_anubis
ENSRNOG00000007629Sf3a310099.202ENSPANG00000021859SF3A310099.202Papio_anubis
ENSRNOG00000007629Sf3a310072.655ENSPANG00000031214-10071.657Papio_anubis
ENSRNOG00000007629Sf3a310092.216ENSPKIG00000004719sf3a310092.216Paramormyrops_kingsleyae
ENSRNOG00000007629Sf3a310094.235ENSPSIG00000004273SF3A310094.235Pelodiscus_sinensis
ENSRNOG00000007629Sf3a310090.414ENSPMGG00000003610sf3a39490.414Periophthalmus_magnuspinnatus
ENSRNOG00000007629Sf3a3100100.000ENSPEMG00000020805Sf3a3100100.000Peromyscus_maniculatus_bairdii
ENSRNOG00000007629Sf3a35981.111ENSPMAG00000001044sf3a39881.111Petromyzon_marinus
ENSRNOG00000007629Sf3a310098.802ENSPCIG00000025719SF3A310098.802Phascolarctos_cinereus
ENSRNOG00000007629Sf3a310090.619ENSPFOG00000005284sf3a310090.619Poecilia_formosa
ENSRNOG00000007629Sf3a39990.153ENSPLAG00000003979sf3a39287.324Poecilia_latipinna
ENSRNOG00000007629Sf3a38684.733ENSPMEG00000021132sf3a38884.733Poecilia_mexicana
ENSRNOG00000007629Sf3a310090.220ENSPREG00000013802sf3a310090.220Poecilia_reticulata
ENSRNOG00000007629Sf3a310096.407ENSPPYG00000001519SF3A310096.407Pongo_abelii
ENSRNOG00000007629Sf3a310092.415ENSPCAG00000010734SF3A310092.415Procavia_capensis
ENSRNOG00000007629Sf3a310087.302ENSPCOG00000020389-10087.302Propithecus_coquereli
ENSRNOG00000007629Sf3a310082.236ENSPCOG00000017131-10082.236Propithecus_coquereli
ENSRNOG00000007629Sf3a310086.427ENSPVAG00000010158SF3A310086.427Pteropus_vampyrus
ENSRNOG00000007629Sf3a310091.417ENSPNYG00000000786sf3a310091.417Pundamilia_nyererei
ENSRNOG00000007629Sf3a310091.218ENSPNAG00000010298sf3a310091.218Pygocentrus_nattereri
ENSRNOG00000007629Sf3a310072.455ENSRBIG00000041123-10072.655Rhinopithecus_bieti
ENSRNOG00000007629Sf3a310099.202ENSRBIG00000043567SF3A310099.202Rhinopithecus_bieti
ENSRNOG00000007629Sf3a310071.657ENSRBIG00000043833-10071.657Rhinopithecus_bieti
ENSRNOG00000007629Sf3a39978.775ENSRROG00000032346-10079.531Rhinopithecus_roxellana
ENSRNOG00000007629Sf3a310099.202ENSRROG00000033888SF3A310099.202Rhinopithecus_roxellana
ENSRNOG00000007629Sf3a39591.691ENSSBOG00000032688SF3A3100100.000Saimiri_boliviensis_boliviensis
ENSRNOG00000007629Sf3a310071.856ENSSBOG00000026932-10070.259Saimiri_boliviensis_boliviensis
ENSRNOG00000007629Sf3a39098.896ENSSHAG00000014530SF3A310098.896Sarcophilus_harrisii
ENSRNOG00000007629Sf3a310092.814ENSSFOG00015005975sf3a310092.814Scleropages_formosus
ENSRNOG00000007629Sf3a310091.417ENSSMAG00000020213sf3a310091.417Scophthalmus_maximus
ENSRNOG00000007629Sf3a310088.224ENSSDUG00000011590sf3a310088.224Seriola_dumerili
ENSRNOG00000007629Sf3a310092.216ENSSLDG00000020635sf3a310092.216Seriola_lalandi_dorsalis
ENSRNOG00000007629Sf3a310096.008ENSSPUG00000004010SF3A310096.008Sphenodon_punctatus
ENSRNOG00000007629Sf3a310091.816ENSSPAG00000018653sf3a310091.816Stegastes_partitus
ENSRNOG00000007629Sf3a310099.202ENSSSCG00000003643SF3A310099.202Sus_scrofa
ENSRNOG00000007629Sf3a38796.322ENSTGUG00000001466SF3A39996.322Taeniopygia_guttata
ENSRNOG00000007629Sf3a310090.419ENSTRUG00000009089sf3a310090.419Takifugu_rubripes
ENSRNOG00000007629Sf3a310089.662ENSTNIG00000009800sf3a310089.662Tetraodon_nigroviridis
ENSRNOG00000007629Sf3a310086.627ENSTBEG00000007614SF3A310086.627Tupaia_belangeri
ENSRNOG00000007629Sf3a310099.002ENSTTRG00000013519SF3A310099.002Tursiops_truncatus
ENSRNOG00000007629Sf3a310099.202ENSUAMG00000006134SF3A310099.202Ursus_americanus
ENSRNOG00000007629Sf3a310099.202ENSUMAG00000021250SF3A310099.202Ursus_maritimus
ENSRNOG00000007629Sf3a366100.000ENSVPAG00000004778SF3A373100.000Vicugna_pacos
ENSRNOG00000007629Sf3a310095.409ENSVVUG00000022908SF3A310095.409Vulpes_vulpes
ENSRNOG00000007629Sf3a310092.415ENSXETG00000022923sf3a310092.415Xenopus_tropicalis
ENSRNOG00000007629Sf3a310090.419ENSXMAG00000017165sf3a310090.419Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex21873635.IBAComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005686U2 snRNP-IEAComponent
GO:0005686U2 snRNP-ISOComponent
GO:0006397mRNA processing-ISOProcess
GO:0008270zinc ion binding-IEAFunction
GO:0016607nuclear speck-IEAComponent
GO:0016607nuclear speck-ISOComponent
GO:0071005U2-type precatalytic spliceosome-IEAComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome-IEAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:1903241U2-type prespliceosome assembly-IEAProcess
GO:1903241U2-type prespliceosome assembly-ISOProcess

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