EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000007998 (Gene tree)
Gene ID
81783
Gene Symbol
Ssb
Alias
MGC93380
Full Name
Sjogren syndrome antigen B
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
9501 bases
Position
chr3:56092501-56102001
Accession
620804
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000011175RRM_1PF00076.224.8e-1311
ENSRNOP00000011175RRM_3PF08777.116.8e-2711
ENSRNOP00000011175LaPF05383.174.4e-2211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000011174-1640XM_006234321ENSRNOP00000011175415 (aa)XP_006234383Q66HM7
Gene Model
Click here to download ENSRNOG00000007998's gene model file
Pathways
Pathway IDPathway NameSource
rno05322Systemic lupus erythematosusKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000007998's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000007998Ssb10094.458ENSRNOG00000011606AABR07061825.110094.458
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000007998Ssb10077.358ENSG00000138385SSB10092.391Homo_sapiens
ENSRNOG00000007998Ssb9850.852ENSAPOG00000003448ssb10051.566Acanthochromis_polyacanthus
ENSRNOG00000007998Ssb10077.725ENSAMEG00000010507SSB10077.725Ailuropoda_melanoleuca
ENSRNOG00000007998Ssb9352.062ENSACIG00000001738ssb8860.976Amphilophus_citrinellus
ENSRNOG00000007998Ssb9851.582ENSAOCG00000020398ssb10052.048Amphiprion_ocellaris
ENSRNOG00000007998Ssb9851.825ENSAPEG00000020395ssb10052.289Amphiprion_percula
ENSRNOG00000007998Ssb9952.163ENSATEG00000016884ssb10052.644Anabas_testudineus
ENSRNOG00000007998Ssb10064.387ENSAPLG00000006109SSB10065.176Anas_platyrhynchos
ENSRNOG00000007998Ssb10058.685ENSACAG00000017008SSB9958.685Anolis_carolinensis
ENSRNOG00000007998Ssb10069.596ENSANAG00000027195-10070.309Aotus_nancymaae
ENSRNOG00000007998Ssb9949.880ENSACLG00000010798ssb10049.640Astatotilapia_calliptera
ENSRNOG00000007998Ssb9848.333ENSAMXG00000012606ssb10050.118Astyanax_mexicanus
ENSRNOG00000007998Ssb10077.435ENSBTAG00000008716SSB10077.435Bos_taurus
ENSRNOG00000007998Ssb7134.106WBGene00016653C44E4.49231.899Caenorhabditis_elegans
ENSRNOG00000007998Ssb10077.197ENSCJAG00000045073SSB8593.913Callithrix_jacchus
ENSRNOG00000007998Ssb10077.725ENSCAFG00000012418SSB10077.725Canis_familiaris
ENSRNOG00000007998Ssb10077.725ENSCAFG00020002900SSB10077.725Canis_lupus_dingo
ENSRNOG00000007998Ssb10073.798ENSCHIG00000022196-10073.798Capra_hircus
ENSRNOG00000007998Ssb10077.672ENSCHIG00000022624-10077.672Capra_hircus
ENSRNOG00000007998Ssb10078.622ENSTSYG00000000097SSB10078.622Carlito_syrichta
ENSRNOG00000007998Ssb10079.277ENSCPOG00000003338SSB10079.277Cavia_porcellus
ENSRNOG00000007998Ssb10078.147ENSCCAG00000035147SSB8694.783Cebus_capucinus
ENSRNOG00000007998Ssb10057.143ENSCATG00000042909-10057.143Cercocebus_atys
ENSRNOG00000007998Ssb10058.432ENSCATG00000036701SSB10058.432Cercocebus_atys
ENSRNOG00000007998Ssb10077.672ENSCLAG00000015617-10077.672Chinchilla_lanigera
ENSRNOG00000007998Ssb10077.435ENSCSAG00000015200SSB8977.435Chlorocebus_sabaeus
ENSRNOG00000007998Ssb9872.087ENSCSAG00000018390-10072.087Chlorocebus_sabaeus
ENSRNOG00000007998Ssb10078.385ENSCHOG00000007763SSB10078.385Choloepus_hoffmanni
ENSRNOG00000007998Ssb10065.647ENSCPBG00000006519SSB10066.824Chrysemys_picta_bellii
ENSRNOG00000007998Ssb9560.750ENSCANG00000028838-9260.750Colobus_angolensis_palliatus
ENSRNOG00000007998Ssb10066.905ENSCANG00000033240-10066.905Colobus_angolensis_palliatus
ENSRNOG00000007998Ssb10077.910ENSCANG00000027695SSB10077.910Colobus_angolensis_palliatus
ENSRNOG00000007998Ssb10090.431ENSCGRG00001024831Ssb10091.866Cricetulus_griseus_chok1gshd
ENSRNOG00000007998Ssb10090.431ENSCGRG00000005387Ssb10091.866Cricetulus_griseus_crigri
ENSRNOG00000007998Ssb9851.825ENSCSEG00000011599ssb9952.068Cynoglossus_semilaevis
ENSRNOG00000007998Ssb9951.202ENSCVAG00000021558ssb10052.278Cyprinodon_variegatus
ENSRNOG00000007998Ssb9847.971ENSDARG00000029252ssb9949.881Danio_rerio
ENSRNOG00000007998Ssb10078.147ENSDNOG00000013450SSB10078.147Dasypus_novemcinctus
ENSRNOG00000007998Ssb10078.554ENSDORG00000005543Ssb10078.554Dipodomys_ordii
ENSRNOG00000007998Ssb6536.201FBgn0011638La6836.559Drosophila_melanogaster
ENSRNOG00000007998Ssb7748.598ENSEBUG00000001237ssb9245.308Eptatretus_burgeri
ENSRNOG00000007998Ssb9978.947ENSEASG00005022835SSB9978.947Equus_asinus_asinus
ENSRNOG00000007998Ssb10078.622ENSECAG00000018495SSB10078.622Equus_caballus
ENSRNOG00000007998Ssb7371.475ENSEEUG00000008077SSB7871.475Erinaceus_europaeus
ENSRNOG00000007998Ssb8058.383ENSELUG00000020929ssb10053.207Esox_lucius
ENSRNOG00000007998Ssb10077.488ENSFCAG00000011601SSB10077.488Felis_catus
ENSRNOG00000007998Ssb9962.768ENSFALG00000000930SSB9964.678Ficedula_albicollis
ENSRNOG00000007998Ssb10077.672ENSFDAG00000000598SSB10077.672Fukomys_damarensis
ENSRNOG00000007998Ssb6252.290ENSFHEG00000003268ssb9349.051Fundulus_heteroclitus
ENSRNOG00000007998Ssb9749.507ENSGMOG00000002664ssb9950.976Gadus_morhua
ENSRNOG00000007998Ssb9965.000ENSGALG00000009677SSB9965.000Gallus_gallus
ENSRNOG00000007998Ssb9950.000ENSGAFG00000002749ssb10050.952Gambusia_affinis
ENSRNOG00000007998Ssb9949.880ENSGACG00000005107ssb10050.600Gasterosteus_aculeatus
ENSRNOG00000007998Ssb10065.647ENSGAGG00000007807SSB10066.588Gopherus_agassizii
ENSRNOG00000007998Ssb10064.608ENSGGOG00000024891-10064.608Gorilla_gorilla
ENSRNOG00000007998Ssb6478.788ENSGGOG00000023471-10078.788Gorilla_gorilla
ENSRNOG00000007998Ssb9949.400ENSHBUG00000006584ssb10049.161Haplochromis_burtoni
ENSRNOG00000007998Ssb10077.672ENSHGLG00000017580-10077.672Heterocephalus_glaber_female
ENSRNOG00000007998Ssb10069.976ENSHGLG00000004478-10069.976Heterocephalus_glaber_female
ENSRNOG00000007998Ssb10070.673ENSHGLG00000005832-10070.673Heterocephalus_glaber_female
ENSRNOG00000007998Ssb10066.746ENSHGLG00100008767-10066.746Heterocephalus_glaber_male
ENSRNOG00000007998Ssb10077.672ENSHGLG00100003084-10077.672Heterocephalus_glaber_male
ENSRNOG00000007998Ssb9849.148ENSHCOG00000019011ssb9949.635Hippocampus_comes
ENSRNOG00000007998Ssb9849.409ENSIPUG00000003681SSB10051.168Ictalurus_punctatus
ENSRNOG00000007998Ssb10078.622ENSSTOG00000008416SSB10078.622Ictidomys_tridecemlineatus
ENSRNOG00000007998Ssb10065.301ENSJJAG00000016250-10065.301Jaculus_jaculus
ENSRNOG00000007998Ssb10081.535ENSJJAG00000023158-10081.535Jaculus_jaculus
ENSRNOG00000007998Ssb9951.923ENSKMAG00000017317ssb10052.404Kryptolebias_marmoratus
ENSRNOG00000007998Ssb9848.418ENSLBEG00000017345ssb10050.120Labrus_bergylta
ENSRNOG00000007998Ssb9960.284ENSLACG00000014056SSB9960.757Latimeria_chalumnae
ENSRNOG00000007998Ssb9856.490ENSLOCG00000007933ssb9958.173Lepisosteus_oculatus
ENSRNOG00000007998Ssb7363.696ENSLAFG00000026721-9963.696Loxodonta_africana
ENSRNOG00000007998Ssb10076.066ENSLAFG00000000867-10077.014Loxodonta_africana
ENSRNOG00000007998Ssb10065.796ENSLAFG00000028909-10065.796Loxodonta_africana
ENSRNOG00000007998Ssb9069.892ENSMFAG00000041478-10069.892Macaca_fascicularis
ENSRNOG00000007998Ssb10077.672ENSMFAG00000039066SSB8594.783Macaca_fascicularis
ENSRNOG00000007998Ssb10077.672ENSMMUG00000023051SSB8594.783Macaca_mulatta
ENSRNOG00000007998Ssb10067.064ENSMMUG00000011724-9767.064Macaca_mulatta
ENSRNOG00000007998Ssb9954.306ENSMMUG00000039889-10054.306Macaca_mulatta
ENSRNOG00000007998Ssb9069.892ENSMNEG00000034698-10069.892Macaca_nemestrina
ENSRNOG00000007998Ssb10067.294ENSMNEG00000028321SSB8594.783Macaca_nemestrina
ENSRNOG00000007998Ssb10077.672ENSMLEG00000035717SSB8894.783Mandrillus_leucophaeus
ENSRNOG00000007998Ssb10056.325ENSMLEG00000042644-10056.325Mandrillus_leucophaeus
ENSRNOG00000007998Ssb9952.289ENSMAMG00000004800ssb10052.771Mastacembelus_armatus
ENSRNOG00000007998Ssb9949.880ENSMZEG00005005749ssb10049.640Maylandia_zebra
ENSRNOG00000007998Ssb9964.762ENSMGAG00000010328SSB9974.146Meleagris_gallopavo
ENSRNOG00000007998Ssb9872.616ENSMICG00000033304-9773.515Microcebus_murinus
ENSRNOG00000007998Ssb9978.469ENSMICG00000028252-9978.469Microcebus_murinus
ENSRNOG00000007998Ssb10069.305ENSMODG00000008227-10070.504Monodelphis_domestica
ENSRNOG00000007998Ssb10059.286ENSMODG00000019271-9981.761Monodelphis_domestica
ENSRNOG00000007998Ssb10055.819ENSMODG00000007027-10056.429Monodelphis_domestica
ENSRNOG00000007998Ssb8056.456ENSMALG00000008045ssb8954.404Monopterus_albus
ENSRNOG00000007998Ssb10095.904MGP_CAROLIEiJ_G0023629-10098.370Mus_caroli
ENSRNOG00000007998Ssb10095.904ENSMUSG00000068882Ssb10097.826Mus_musculus
ENSRNOG00000007998Ssb10095.422MGP_PahariEiJ_G0025081-10097.826Mus_pahari
ENSRNOG00000007998Ssb10095.904MGP_SPRETEiJ_G0024551Ssb10097.826Mus_spretus
ENSRNOG00000007998Ssb10078.147ENSMPUG00000000785SSB10078.147Mustela_putorius_furo
ENSRNOG00000007998Ssb10078.759ENSMLUG00000016316SSB10078.759Myotis_lucifugus
ENSRNOG00000007998Ssb9949.522ENSNBRG00000012661ssb10049.282Neolamprologus_brichardi
ENSRNOG00000007998Ssb10058.432ENSNLEG00000028754-10059.382Nomascus_leucogenys
ENSRNOG00000007998Ssb10077.910ENSNLEG00000004958SSB8694.783Nomascus_leucogenys
ENSRNOG00000007998Ssb6081.048ENSMEUG00000001650-10081.048Notamacropus_eugenii
ENSRNOG00000007998Ssb5283.226ENSOPRG00000008475-10056.863Ochotona_princeps
ENSRNOG00000007998Ssb9375.321ENSODEG00000004202-10075.321Octodon_degus
ENSRNOG00000007998Ssb9949.282ENSONIG00000008776ssb10049.043Oreochromis_niloticus
ENSRNOG00000007998Ssb10070.784ENSOANG00000008543SSB10072.209Ornithorhynchus_anatinus
ENSRNOG00000007998Ssb10078.622ENSOCUG00000010396SSB10078.622Oryctolagus_cuniculus
ENSRNOG00000007998Ssb9951.675ENSORLG00000017208ssb10053.237Oryzias_latipes
ENSRNOG00000007998Ssb9950.835ENSORLG00020022574ssb10052.871Oryzias_latipes_hni
ENSRNOG00000007998Ssb9951.196ENSORLG00015016592ssb10052.758Oryzias_latipes_hsok
ENSRNOG00000007998Ssb9850.966ENSOMEG00000003193ssb10052.153Oryzias_melastigma
ENSRNOG00000007998Ssb10076.303ENSOGAG00000029768SSB10076.303Otolemur_garnettii
ENSRNOG00000007998Ssb10076.485ENSOARG00000002906SSB10077.672Ovis_aries
ENSRNOG00000007998Ssb9963.333ENSPPAG00000032427-10082.946Pan_paniscus
ENSRNOG00000007998Ssb10077.358ENSPPAG00000042673SSB8694.783Pan_paniscus
ENSRNOG00000007998Ssb9759.413ENSPPAG00000006189-9662.274Pan_paniscus
ENSRNOG00000007998Ssb10077.488ENSPPRG00000006599SSB10077.488Panthera_pardus
ENSRNOG00000007998Ssb10077.251ENSPTIG00000011021SSB9777.251Panthera_tigris_altaica
ENSRNOG00000007998Ssb9961.337ENSPTRG00000042880-9961.337Pan_troglodytes
ENSRNOG00000007998Ssb10077.358ENSPTRG00000012620SSB8694.783Pan_troglodytes
ENSRNOG00000007998Ssb10077.672ENSPANG00000007440SSB8594.783Papio_anubis
ENSRNOG00000007998Ssb9555.779ENSPANG00000031877-9155.779Papio_anubis
ENSRNOG00000007998Ssb10057.143ENSPANG00000034126-10057.619Papio_anubis
ENSRNOG00000007998Ssb9954.087ENSPKIG00000019325ssb10056.295Paramormyrops_kingsleyae
ENSRNOG00000007998Ssb10063.529ENSPSIG00000002265SSB9364.471Pelodiscus_sinensis
ENSRNOG00000007998Ssb8447.875ENSPMGG00000020075ssb9049.577Periophthalmus_magnuspinnatus
ENSRNOG00000007998Ssb7948.936ENSPMAG00000002982ssb8746.114Petromyzon_marinus
ENSRNOG00000007998Ssb10070.379ENSPCIG00000028591-10071.327Phascolarctos_cinereus
ENSRNOG00000007998Ssb9951.319ENSPFOG00000009650ssb10051.799Poecilia_formosa
ENSRNOG00000007998Ssb7956.325ENSPLAG00000020498ssb10051.799Poecilia_latipinna
ENSRNOG00000007998Ssb9950.120ENSPMEG00000001051ssb10051.559Poecilia_mexicana
ENSRNOG00000007998Ssb9551.515ENSPREG00000003708ssb9952.020Poecilia_reticulata
ENSRNOG00000007998Ssb10077.910ENSPPYG00000012919SSB10077.910Pongo_abelii
ENSRNOG00000007998Ssb9572.864ENSPCAG00000010276SSB10074.121Procavia_capensis
ENSRNOG00000007998Ssb10073.333ENSPCOG00000015741-9287.931Propithecus_coquereli
ENSRNOG00000007998Ssb10067.221ENSPCOG00000023189-10067.221Propithecus_coquereli
ENSRNOG00000007998Ssb8779.396ENSPVAG00000006615SSB9879.396Pteropus_vampyrus
ENSRNOG00000007998Ssb9949.880ENSPNYG00000006444ssb10049.640Pundamilia_nyererei
ENSRNOG00000007998Ssb9849.289ENSPNAG00000011708ssb10051.756Pygocentrus_nattereri
ENSRNOG00000007998Ssb9464.721ENSRBIG00000041232-8877.698Rhinopithecus_bieti
ENSRNOG00000007998Ssb10054.157ENSRBIG00000029918-10054.632Rhinopithecus_bieti
ENSRNOG00000007998Ssb8969.577ENSRBIG00000041608-9869.577Rhinopithecus_bieti
ENSRNOG00000007998Ssb10066.588ENSRBIG00000041972SSB8894.783Rhinopithecus_bieti
ENSRNOG00000007998Ssb9868.990ENSRROG00000034102-9868.841Rhinopithecus_roxellana
ENSRNOG00000007998Ssb10062.945ENSRROG00000007149-10062.945Rhinopithecus_roxellana
ENSRNOG00000007998Ssb10077.910ENSRROG00000040346SSB8594.783Rhinopithecus_roxellana
ENSRNOG00000007998Ssb9866.180ENSRROG00000031684-8880.405Rhinopithecus_roxellana
ENSRNOG00000007998Ssb10077.910ENSSBOG00000027204SSB8694.783Saimiri_boliviensis_boliviensis
ENSRNOG00000007998Ssb10070.616ENSSHAG00000018062SSB10071.564Sarcophilus_harrisii
ENSRNOG00000007998Ssb9956.429ENSSFOG00015000550ssb10057.783Scleropages_formosus
ENSRNOG00000007998Ssb9848.900ENSSMAG00000013885ssb9951.804Scophthalmus_maximus
ENSRNOG00000007998Ssb9951.807ENSSDUG00000020117ssb10052.289Seriola_dumerili
ENSRNOG00000007998Ssb9950.847ENSSLDG00000002525ssb10050.605Seriola_lalandi_dorsalis
ENSRNOG00000007998Ssb9568.922ENSSARG00000007747SSB10068.922Sorex_araneus
ENSRNOG00000007998Ssb10064.403ENSSPUG00000012112SSB10066.430Sphenodon_punctatus
ENSRNOG00000007998Ssb9850.852ENSSPAG00000005696ssb10051.325Stegastes_partitus
ENSRNOG00000007998Ssb9971.635ENSSSCG00000015938SSB9972.182Sus_scrofa
ENSRNOG00000007998Ssb9365.195ENSTGUG00000007942SSB9964.133Taeniopygia_guttata
ENSRNOG00000007998Ssb9951.559ENSTRUG00000017839ssb10052.392Takifugu_rubripes
ENSRNOG00000007998Ssb9254.026ENSTNIG00000000915ssb9954.026Tetraodon_nigroviridis
ENSRNOG00000007998Ssb8294.783ENSTBEG00000009056SSB8194.783Tupaia_belangeri
ENSRNOG00000007998Ssb10076.485ENSTTRG00000002152SSB10076.485Tursiops_truncatus
ENSRNOG00000007998Ssb9380.779ENSUAMG00000027833SSB9780.779Ursus_americanus
ENSRNOG00000007998Ssb10077.488ENSUMAG00000013907SSB10077.488Ursus_maritimus
ENSRNOG00000007998Ssb10077.910ENSVPAG00000007183SSB10077.910Vicugna_pacos
ENSRNOG00000007998Ssb10077.725ENSVVUG00000016573SSB7877.725Vulpes_vulpes
ENSRNOG00000007998Ssb9356.623ENSXETG00000025402ssb8757.922Xenopus_tropicalis
ENSRNOG00000007998Ssb7954.848ENSXCOG00000019109ssb9360.156Xiphophorus_couchianus
ENSRNOG00000007998Ssb9950.238ENSXMAG00000004888ssb10050.238Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding-ISOFunction
GO:0001682tRNA 5'-leader removal-ISOProcess
GO:0003723RNA binding-IEAFunction
GO:0003723RNA binding-ISOFunction
GO:0005515protein binding17646655.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0006396RNA processing-IEAProcess
GO:0006409tRNA export from nucleus-ISOProcess
GO:0008033tRNA processing12049746.IMPProcess
GO:0008033tRNA processing-ISOProcess
GO:0008266poly(U) RNA binding-ISOFunction
GO:0042780tRNA 3'-end processing-ISOProcess
GO:0042803protein homodimerization activity-ISOFunction
GO:0071045nuclear histone mRNA catabolic process-ISOProcess
GO:0075522IRES-dependent viral translational initiation-ISOProcess
GO:1903608protein localization to cytoplasmic stress granule-ISOProcess
GO:1990825sequence-specific mRNA binding-ISOFunction
GO:1990904ribonucleoprotein complex-IEAComponent

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