EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000008703 (Gene tree)
Gene ID: 287113
Gene Symbol: Rnps1
Alias: LOC287113
Full Name: RNA binding protein with serine rich domain 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 10259 bases
Position: chr10:13786459-13796717
Accession: 1307522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000047771	RRM_1	PF00076.22	6.5e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000010915	-	1822	XM_006245931	ENSRNOP00000047771	305 (aa)	XP_006245993	Q6AYK1

Gene Model

Click here to download ENSRNOG00000008703's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000008703's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000008703	Rnps1	100	99.672	ENSG00000205937	RNPS1	100	100.000	Homo_sapiens
ENSRNOG00000008703	Rnps1	78	69.038	ENSAPOG00000014649	-	84	70.000	Acanthochromis_polyacanthus
ENSRNOG00000008703	Rnps1	100	99.672	ENSAMEG00000017861	RNPS1	100	99.672	Ailuropoda_melanoleuca
ENSRNOG00000008703	Rnps1	70	65.116	ENSACIG00000014367	-	76	66.512	Amphilophus_citrinellus
ENSRNOG00000008703	Rnps1	78	71.967	ENSATEG00000024267	RNPS1	84	72.500	Anabas_testudineus
ENSRNOG00000008703	Rnps1	86	65.399	ENSAPLG00000006231	RNPS1	65	93.548	Anas_platyrhynchos
ENSRNOG00000008703	Rnps1	76	90.558	ENSACAG00000004088	RNPS1	94	90.558	Anolis_carolinensis
ENSRNOG00000008703	Rnps1	79	92.149	ENSANAG00000029802	-	90	92.469	Aotus_nancymaae
ENSRNOG00000008703	Rnps1	100	99.344	ENSANAG00000028802	RNPS1	100	99.344	Aotus_nancymaae
ENSRNOG00000008703	Rnps1	86	60.837	ENSACLG00000021537	-	96	67.925	Astatotilapia_calliptera
ENSRNOG00000008703	Rnps1	79	75.417	ENSAMXG00000006330	-	81	65.686	Astyanax_mexicanus
ENSRNOG00000008703	Rnps1	100	99.016	ENSBTAG00000009969	RNPS1	100	99.016	Bos_taurus
ENSRNOG00000008703	Rnps1	100	99.672	ENSCJAG00000014969	RNPS1	100	99.672	Callithrix_jacchus
ENSRNOG00000008703	Rnps1	100	99.672	ENSCAFG00000019397	RNPS1	100	99.672	Canis_familiaris
ENSRNOG00000008703	Rnps1	100	99.672	ENSCAFG00020026159	RNPS1	100	99.672	Canis_lupus_dingo
ENSRNOG00000008703	Rnps1	67	99.015	ENSCHIG00000014621	-	69	98.529	Capra_hircus
ENSRNOG00000008703	Rnps1	79	95.041	ENSTSYG00000031848	-	98	95.000	Carlito_syrichta
ENSRNOG00000008703	Rnps1	100	99.672	ENSTSYG00000001629	RNPS1	100	99.672	Carlito_syrichta
ENSRNOG00000008703	Rnps1	100	100.000	ENSCAPG00000007731	RNPS1	100	100.000	Cavia_aperea
ENSRNOG00000008703	Rnps1	100	100.000	ENSCPOG00000002066	RNPS1	100	100.000	Cavia_porcellus
ENSRNOG00000008703	Rnps1	100	99.344	ENSCCAG00000034480	RNPS1	100	99.344	Cebus_capucinus
ENSRNOG00000008703	Rnps1	100	99.672	ENSCATG00000013756	RNPS1	100	99.672	Cercocebus_atys
ENSRNOG00000008703	Rnps1	95	89.691	ENSCATG00000042361	-	87	93.511	Cercocebus_atys
ENSRNOG00000008703	Rnps1	100	99.344	ENSCLAG00000015546	RNPS1	100	99.344	Chinchilla_lanigera
ENSRNOG00000008703	Rnps1	92	96.797	ENSCSAG00000005219	-	94	96.797	Chlorocebus_sabaeus
ENSRNOG00000008703	Rnps1	100	98.033	ENSCHOG00000004866	RNPS1	100	98.033	Choloepus_hoffmanni
ENSRNOG00000008703	Rnps1	100	99.672	ENSCANG00000041307	RNPS1	100	99.672	Colobus_angolensis_palliatus
ENSRNOG00000008703	Rnps1	67	85.507	ENSCANG00000030189	-	67	79.208	Colobus_angolensis_palliatus
ENSRNOG00000008703	Rnps1	100	99.672	ENSCGRG00001020431	Rnps1	100	99.672	Cricetulus_griseus_chok1gshd
ENSRNOG00000008703	Rnps1	100	99.016	ENSCGRG00000014021	Rnps1	80	99.587	Cricetulus_griseus_crigri
ENSRNOG00000008703	Rnps1	85	68.321	ENSCSEG00000000402	RNPS1	85	68.321	Cynoglossus_semilaevis
ENSRNOG00000008703	Rnps1	78	63.598	ENSDARG00000100188	RNPS1	84	69.583	Danio_rerio
ENSRNOG00000008703	Rnps1	78	63.598	ENSDARG00000116743	rnps1	84	69.583	Danio_rerio
ENSRNOG00000008703	Rnps1	65	72.362	ENSDNOG00000038751	-	99	72.222	Dasypus_novemcinctus
ENSRNOG00000008703	Rnps1	100	99.672	ENSDNOG00000016081	RNPS1	100	99.672	Dasypus_novemcinctus
ENSRNOG00000008703	Rnps1	100	99.016	ENSDORG00000001755	Rnps1	100	99.016	Dipodomys_ordii
ENSRNOG00000008703	Rnps1	100	99.672	ENSEASG00005004862	RNPS1	100	99.672	Equus_asinus_asinus
ENSRNOG00000008703	Rnps1	81	93.145	ENSECAG00000023288	RNPS1	83	97.835	Equus_caballus
ENSRNOG00000008703	Rnps1	100	80.984	ENSEEUG00000005933	RNPS1	100	80.984	Erinaceus_europaeus
ENSRNOG00000008703	Rnps1	100	99.344	ENSFCAG00000007690	RNPS1	100	99.344	Felis_catus
ENSRNOG00000008703	Rnps1	79	95.000	ENSFALG00000004868	RNPS1	85	95.000	Ficedula_albicollis
ENSRNOG00000008703	Rnps1	100	99.016	ENSFDAG00000003386	RNPS1	100	99.016	Fukomys_damarensis
ENSRNOG00000008703	Rnps1	70	70.698	ENSFHEG00000011705	RNPS1	75	71.296	Fundulus_heteroclitus
ENSRNOG00000008703	Rnps1	78	94.979	ENSGALG00000009288	RNPS1	84	94.979	Gallus_gallus
ENSRNOG00000008703	Rnps1	86	93.156	ENSGAGG00000010452	RNPS1	86	93.156	Gopherus_agassizii
ENSRNOG00000008703	Rnps1	100	99.672	ENSGGOG00000014275	RNPS1	100	99.672	Gorilla_gorilla
ENSRNOG00000008703	Rnps1	68	97.573	ENSGGOG00000026421	-	79	97.573	Gorilla_gorilla
ENSRNOG00000008703	Rnps1	79	64.315	ENSHBUG00000017337	-	84	71.784	Haplochromis_burtoni
ENSRNOG00000008703	Rnps1	79	94.737	ENSHGLG00000006292	-	97	94.737	Heterocephalus_glaber_female
ENSRNOG00000008703	Rnps1	100	99.672	ENSHGLG00000013957	RNPS1	100	99.672	Heterocephalus_glaber_female
ENSRNOG00000008703	Rnps1	67	92.157	ENSHGLG00100011610	-	83	92.157	Heterocephalus_glaber_male
ENSRNOG00000008703	Rnps1	85	93.822	ENSHGLG00100015267	-	79	95.023	Heterocephalus_glaber_male
ENSRNOG00000008703	Rnps1	80	82.857	ENSHGLG00100017879	-	80	69.835	Heterocephalus_glaber_male
ENSRNOG00000008703	Rnps1	100	99.672	ENSHGLG00100003539	RNPS1	100	99.672	Heterocephalus_glaber_male
ENSRNOG00000008703	Rnps1	86	73.764	ENSSTOG00000013200	RNPS1	100	88.525	Ictidomys_tridecemlineatus
ENSRNOG00000008703	Rnps1	100	99.344	ENSJJAG00000015576	-	100	99.344	Jaculus_jaculus
ENSRNOG00000008703	Rnps1	78	87.866	ENSLACG00000007112	RNPS1	84	87.866	Latimeria_chalumnae
ENSRNOG00000008703	Rnps1	78	67.364	ENSLOCG00000001758	RNPS1	84	83.264	Lepisosteus_oculatus
ENSRNOG00000008703	Rnps1	100	99.672	ENSMFAG00000042142	RNPS1	100	99.672	Macaca_fascicularis
ENSRNOG00000008703	Rnps1	88	94.403	ENSMMUG00000041726	-	92	94.297	Macaca_mulatta
ENSRNOG00000008703	Rnps1	66	99.505	ENSMMUG00000019238	-	80	100.000	Macaca_mulatta
ENSRNOG00000008703	Rnps1	88	94.776	ENSMNEG00000024827	-	92	94.677	Macaca_nemestrina
ENSRNOG00000008703	Rnps1	100	99.672	ENSMLEG00000036928	RNPS1	100	99.672	Mandrillus_leucophaeus
ENSRNOG00000008703	Rnps1	68	92.718	ENSMLEG00000040232	-	80	92.718	Mandrillus_leucophaeus
ENSRNOG00000008703	Rnps1	78	69.874	ENSMAMG00000021609	-	84	70.417	Mastacembelus_armatus
ENSRNOG00000008703	Rnps1	80	73.770	ENSMAMG00000021148	-	88	67.816	Mastacembelus_armatus
ENSRNOG00000008703	Rnps1	78	64.167	ENSMZEG00005006256	-	84	71.667	Maylandia_zebra
ENSRNOG00000008703	Rnps1	79	92.946	ENSMGAG00000010042	RNPS1	98	94.068	Meleagris_gallopavo
ENSRNOG00000008703	Rnps1	100	99.016	ENSMICG00000031543	RNPS1	100	99.016	Microcebus_murinus
ENSRNOG00000008703	Rnps1	100	99.672	ENSMOCG00000003429	Rnps1	100	99.672	Microtus_ochrogaster
ENSRNOG00000008703	Rnps1	70	66.512	ENSMMOG00000010863	RNPS1	75	65.116	Mola_mola
ENSRNOG00000008703	Rnps1	100	97.386	ENSMODG00000015891	RNPS1	100	97.386	Monodelphis_domestica
ENSRNOG00000008703	Rnps1	100	99.672	ENSMUSG00000034681	Rnps1	100	99.672	Mus_musculus
ENSRNOG00000008703	Rnps1	100	99.016	MGP_PahariEiJ_G0023498	Rnps1	100	99.016	Mus_pahari
ENSRNOG00000008703	Rnps1	100	99.672	MGP_SPRETEiJ_G0022092	Rnps1	100	99.672	Mus_spretus
ENSRNOG00000008703	Rnps1	100	99.672	ENSMLUG00000016808	RNPS1	100	99.672	Myotis_lucifugus
ENSRNOG00000008703	Rnps1	100	99.344	ENSNGAG00000023702	Rnps1	100	99.344	Nannospalax_galili
ENSRNOG00000008703	Rnps1	81	63.158	ENSNBRG00000014540	-	92	68.359	Neolamprologus_brichardi
ENSRNOG00000008703	Rnps1	70	67.907	ENSNBRG00000023437	RNPS1	75	66.512	Neolamprologus_brichardi
ENSRNOG00000008703	Rnps1	89	97.794	ENSNLEG00000009243	RNPS1	100	97.794	Nomascus_leucogenys
ENSRNOG00000008703	Rnps1	100	96.393	ENSMEUG00000008882	RNPS1	100	96.393	Notamacropus_eugenii
ENSRNOG00000008703	Rnps1	100	96.393	ENSOPRG00000016422	RNPS1	100	96.393	Ochotona_princeps
ENSRNOG00000008703	Rnps1	52	66.250	ENSODEG00000017258	-	77	64.516	Octodon_degus
ENSRNOG00000008703	Rnps1	54	64.634	ENSODEG00000002513	-	79	64.516	Octodon_degus
ENSRNOG00000008703	Rnps1	79	69.710	ENSORLG00015011183	RNPS1	74	70.954	Oryzias_latipes_hsok
ENSRNOG00000008703	Rnps1	95	98.966	ENSOARG00000018056	-	81	98.966	Ovis_aries
ENSRNOG00000008703	Rnps1	79	94.628	ENSPPAG00000037836	-	99	94.628	Pan_paniscus
ENSRNOG00000008703	Rnps1	89	94.444	ENSPPAG00000011845	RNPS1	90	93.724	Pan_paniscus
ENSRNOG00000008703	Rnps1	100	99.344	ENSPPRG00000011255	RNPS1	100	99.344	Panthera_pardus
ENSRNOG00000008703	Rnps1	63	100.000	ENSPTIG00000015643	RNPS1	85	100.000	Panthera_tigris_altaica
ENSRNOG00000008703	Rnps1	78	93.305	ENSPTRG00000046326	-	91	93.305	Pan_troglodytes
ENSRNOG00000008703	Rnps1	100	100.000	ENSPTRG00000031310	RNPS1	100	100.000	Pan_troglodytes
ENSRNOG00000008703	Rnps1	75	67.391	ENSPANG00000033576	-	78	67.391	Papio_anubis
ENSRNOG00000008703	Rnps1	100	99.672	ENSPANG00000015748	RNPS1	100	99.672	Papio_anubis
ENSRNOG00000008703	Rnps1	78	79.583	ENSPKIG00000023465	RNPS1	84	79.583	Paramormyrops_kingsleyae
ENSRNOG00000008703	Rnps1	86	92.776	ENSPSIG00000006048	RNPS1	86	92.776	Pelodiscus_sinensis
ENSRNOG00000008703	Rnps1	100	99.672	ENSPEMG00000012797	Rnps1	100	99.672	Peromyscus_maniculatus_bairdii
ENSRNOG00000008703	Rnps1	61	88.742	ENSPCIG00000016114	-	80	98.387	Phascolarctos_cinereus
ENSRNOG00000008703	Rnps1	100	97.705	ENSPCIG00000025012	RNPS1	100	97.705	Phascolarctos_cinereus
ENSRNOG00000008703	Rnps1	100	97.377	ENSPCAG00000004514	RNPS1	100	97.377	Procavia_capensis
ENSRNOG00000008703	Rnps1	100	99.344	ENSPCOG00000005478	RNPS1	100	99.344	Propithecus_coquereli
ENSRNOG00000008703	Rnps1	100	99.344	ENSPVAG00000005105	RNPS1	100	99.344	Pteropus_vampyrus
ENSRNOG00000008703	Rnps1	92	98.929	ENSRBIG00000038965	-	99	98.929	Rhinopithecus_bieti
ENSRNOG00000008703	Rnps1	89	99.632	ENSRROG00000041252	RNPS1	97	96.218	Rhinopithecus_roxellana
ENSRNOG00000008703	Rnps1	100	99.672	ENSSBOG00000027927	RNPS1	100	99.672	Saimiri_boliviensis_boliviensis
ENSRNOG00000008703	Rnps1	100	97.705	ENSSHAG00000016951	RNPS1	100	97.705	Sarcophilus_harrisii
ENSRNOG00000008703	Rnps1	79	76.446	ENSSFOG00015019341	-	75	69.295	Scleropages_formosus
ENSRNOG00000008703	Rnps1	78	72.917	ENSSFOG00015022746	RNPS1	87	66.946	Scleropages_formosus
ENSRNOG00000008703	Rnps1	78	70.711	ENSSDUG00000011453	RNPS1	84	71.250	Seriola_dumerili
ENSRNOG00000008703	Rnps1	79	96.694	ENSSARG00000001577	RNPS1	86	96.694	Sorex_araneus
ENSRNOG00000008703	Rnps1	86	93.916	ENSSPUG00000016588	RNPS1	86	93.916	Sphenodon_punctatus
ENSRNOG00000008703	Rnps1	100	99.344	ENSSSCG00000008048	RNPS1	100	99.344	Sus_scrofa
ENSRNOG00000008703	Rnps1	79	94.583	ENSTGUG00000003237	RNPS1	85	94.583	Taeniopygia_guttata
ENSRNOG00000008703	Rnps1	78	71.667	ENSTRUG00000008602	RNPS1	84	71.667	Takifugu_rubripes
ENSRNOG00000008703	Rnps1	79	72.016	ENSTNIG00000009753	RNPS1	84	72.016	Tetraodon_nigroviridis
ENSRNOG00000008703	Rnps1	89	99.632	ENSTBEG00000009098	RNPS1	100	99.632	Tupaia_belangeri
ENSRNOG00000008703	Rnps1	100	99.672	ENSTTRG00000008220	RNPS1	100	99.672	Tursiops_truncatus
ENSRNOG00000008703	Rnps1	90	99.634	ENSUAMG00000004462	RNPS1	100	99.634	Ursus_americanus
ENSRNOG00000008703	Rnps1	100	99.672	ENSUMAG00000022327	RNPS1	100	99.672	Ursus_maritimus
ENSRNOG00000008703	Rnps1	100	99.672	ENSVVUG00000009244	RNPS1	100	99.672	Vulpes_vulpes
ENSRNOG00000008703	Rnps1	78	69.874	ENSXETG00000024439	rnps1	73	72.124	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISO	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISO	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0008380	RNA splicing	21873635.	IBA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0043065	positive regulation of apoptotic process	-	ISS	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISS	Process
GO:0061574	ASAP complex	21873635.	IBA	Component
GO:0061574	ASAP complex	-	ISO	Component
GO:0061574	ASAP complex	-	ISS	Component