EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000008927 (Gene tree)
Gene ID
27080
Gene Symbol
Hbp1
Alias
Hmgb1
Full Name
HMG-box transcription factor 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
26146 bases
Position
chr6:51231480-51257625
Accession
620444
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000012004AXHPF08517.121.6e-3411
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000012004-2653XM_006239975ENSRNOP00000012004523 (aa)XP_006240037Z4YNI2
Gene Model
Click here to download ENSRNOG00000008927's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000008927's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000008927Hbp19892.621ENSG00000105856HBP110093.010Homo_sapiens
ENSRNOG00000008927Hbp19361.460ENSAPOG00000015816hbp19962.168Acanthochromis_polyacanthus
ENSRNOG00000008927Hbp19992.871ENSAMEG00000013492HBP110092.871Ailuropoda_melanoleuca
ENSRNOG00000008927Hbp19754.688ENSACIG00000019093-9653.906Amphilophus_citrinellus
ENSRNOG00000008927Hbp19460.119ENSACIG00000018873hbp19461.200Amphilophus_citrinellus
ENSRNOG00000008927Hbp19361.258ENSAOCG00000010889hbp19961.963Amphiprion_ocellaris
ENSRNOG00000008927Hbp19853.184ENSAOCG00000001429-9954.269Amphiprion_ocellaris
ENSRNOG00000008927Hbp19852.533ENSAPEG00000022589-9953.802Amphiprion_percula
ENSRNOG00000008927Hbp19361.055ENSAPEG00000002330hbp19961.759Amphiprion_percula
ENSRNOG00000008927Hbp19361.460ENSATEG00000016411hbp19962.372Anabas_testudineus
ENSRNOG00000008927Hbp19754.159ENSATEG00000003902-9756.557Anabas_testudineus
ENSRNOG00000008927Hbp19882.308ENSAPLG00000007110HBP110082.500Anas_platyrhynchos
ENSRNOG00000008927Hbp19878.958ENSACAG00000015023HBP19979.537Anolis_carolinensis
ENSRNOG00000008927Hbp19993.077ENSANAG00000022302HBP110093.398Aotus_nancymaae
ENSRNOG00000008927Hbp19852.652ENSACLG00000003606HBP19952.741Astatotilapia_calliptera
ENSRNOG00000008927Hbp19560.079ENSACLG00000004758hbp19860.956Astatotilapia_calliptera
ENSRNOG00000008927Hbp110062.664ENSAMXG00000017678hbp110064.906Astyanax_mexicanus
ENSRNOG00000008927Hbp110091.985ENSBTAG00000005524HBP110091.985Bos_taurus
ENSRNOG00000008927Hbp19992.898ENSCJAG00000016260HBP110093.282Callithrix_jacchus
ENSRNOG00000008927Hbp110092.748ENSCAFG00000003939HBP110092.748Canis_familiaris
ENSRNOG00000008927Hbp110092.748ENSCAFG00020023119HBP110092.748Canis_lupus_dingo
ENSRNOG00000008927Hbp19892.023ENSCHIG00000024405HBP110092.023Capra_hircus
ENSRNOG00000008927Hbp110092.250ENSTSYG00000010057HBP110093.023Carlito_syrichta
ENSRNOG00000008927Hbp19992.678ENSCAPG00000017460HBP110092.678Cavia_aperea
ENSRNOG00000008927Hbp110093.321ENSCPOG00000002375HBP110093.321Cavia_porcellus
ENSRNOG00000008927Hbp19992.885ENSCCAG00000026359HBP110093.204Cebus_capucinus
ENSRNOG00000008927Hbp19992.500ENSCATG00000021910HBP110092.816Cercocebus_atys
ENSRNOG00000008927Hbp110092.952ENSCLAG00000005170HBP110093.333Chinchilla_lanigera
ENSRNOG00000008927Hbp110092.381ENSCSAG00000011395HBP110092.762Chlorocebus_sabaeus
ENSRNOG00000008927Hbp168100.000ENSCHOG00000006820HBP170100.000Choloepus_hoffmanni
ENSRNOG00000008927Hbp110082.707ENSCPBG00000000954HBP110082.707Chrysemys_picta_bellii
ENSRNOG00000008927Hbp19992.500ENSCANG00000022804HBP110092.816Colobus_angolensis_palliatus
ENSRNOG00000008927Hbp110093.524ENSCGRG00001014437Hbp110094.286Cricetulus_griseus_chok1gshd
ENSRNOG00000008927Hbp110093.524ENSCGRG00000013859Hbp110094.286Cricetulus_griseus_crigri
ENSRNOG00000008927Hbp19361.055ENSCSEG00000003373hbp19961.963Cynoglossus_semilaevis
ENSRNOG00000008927Hbp19361.554ENSCVAG00000008930hbp19961.554Cyprinodon_variegatus
ENSRNOG00000008927Hbp19852.207ENSCVAG00000008501-9951.830Cyprinodon_variegatus
ENSRNOG00000008927Hbp110062.500ENSDARG00000028517hbp110062.913Danio_rerio
ENSRNOG00000008927Hbp110092.381ENSDNOG00000004405HBP19692.692Dasypus_novemcinctus
ENSRNOG00000008927Hbp16991.160ENSDORG00000010576Hbp19991.713Dipodomys_ordii
ENSRNOG00000008927Hbp19882.913ENSETEG00000018542HBP110083.301Echinops_telfairi
ENSRNOG00000008927Hbp19145.618ENSEBUG00000016475hbp18345.491Eptatretus_burgeri
ENSRNOG00000008927Hbp110093.321ENSEASG00005017469HBP19393.321Equus_asinus_asinus
ENSRNOG00000008927Hbp110093.511ENSECAG00000020969HBP110093.269Equus_caballus
ENSRNOG00000008927Hbp19756.589ENSELUG00000017031-9256.008Esox_lucius
ENSRNOG00000008927Hbp19361.538ENSELUG00000006967hbp19960.931Esox_lucius
ENSRNOG00000008927Hbp19992.308ENSFCAG00000005858HBP19292.308Felis_catus
ENSRNOG00000008927Hbp110080.263ENSFALG00000010259HBP110080.263Ficedula_albicollis
ENSRNOG00000008927Hbp110092.190ENSFDAG00000007897HBP110092.952Fukomys_damarensis
ENSRNOG00000008927Hbp19851.224ENSFHEG00000014389-9951.521Fundulus_heteroclitus
ENSRNOG00000008927Hbp19360.649ENSFHEG00000008222hbp19961.554Fundulus_heteroclitus
ENSRNOG00000008927Hbp19360.246ENSGMOG00000013782hbp19960.532Gadus_morhua
ENSRNOG00000008927Hbp110080.488ENSGALG00000008050HBP110080.488Gallus_gallus
ENSRNOG00000008927Hbp19853.077ENSGAFG00000004651-9953.269Gambusia_affinis
ENSRNOG00000008927Hbp19361.258ENSGAFG00000021976hbp19962.168Gambusia_affinis
ENSRNOG00000008927Hbp19253.673ENSGACG00000019192-9453.265Gasterosteus_aculeatus
ENSRNOG00000008927Hbp19360.041ENSGACG00000010054hbp19960.243Gasterosteus_aculeatus
ENSRNOG00000008927Hbp110082.674ENSGAGG00000023042HBP110082.674Gopherus_agassizii
ENSRNOG00000008927Hbp19992.190ENSGGOG00000007788HBP110092.816Gorilla_gorilla
ENSRNOG00000008927Hbp19853.030ENSHBUG00000016198-9953.119Haplochromis_burtoni
ENSRNOG00000008927Hbp19561.034ENSHBUG00000004967hbp19661.924Haplochromis_burtoni
ENSRNOG00000008927Hbp110091.619ENSHGLG00000019188HBP110092.000Heterocephalus_glaber_female
ENSRNOG00000008927Hbp19871.012ENSHGLG00100014672-10071.012Heterocephalus_glaber_male
ENSRNOG00000008927Hbp110091.619ENSHGLG00100001912HBP110092.000Heterocephalus_glaber_male
ENSRNOG00000008927Hbp19051.812ENSHCOG00000010740-8752.026Hippocampus_comes
ENSRNOG00000008927Hbp19158.714ENSHCOG00000011877hbp19859.336Hippocampus_comes
ENSRNOG00000008927Hbp110064.394ENSIPUG00000023044hbp110064.340Ictalurus_punctatus
ENSRNOG00000008927Hbp110093.333ENSSTOG00000013846HBP110093.524Ictidomys_tridecemlineatus
ENSRNOG00000008927Hbp110093.714ENSJJAG00000015341Hbp110094.095Jaculus_jaculus
ENSRNOG00000008927Hbp19361.963ENSKMAG00000003132hbp19963.190Kryptolebias_marmoratus
ENSRNOG00000008927Hbp19153.556ENSKMAG00000000266-9353.766Kryptolebias_marmoratus
ENSRNOG00000008927Hbp19853.167ENSLBEG00000023959-9953.359Labrus_bergylta
ENSRNOG00000008927Hbp19659.109ENSLBEG00000012078hbp19960.772Labrus_bergylta
ENSRNOG00000008927Hbp19972.505ENSLACG00000009119HBP19872.881Latimeria_chalumnae
ENSRNOG00000008927Hbp110069.434ENSLOCG00000015822hbp110069.245Lepisosteus_oculatus
ENSRNOG00000008927Hbp19889.922ENSLAFG00000005317HBP110090.310Loxodonta_africana
ENSRNOG00000008927Hbp19992.500ENSMFAG00000030375HBP110092.816Macaca_fascicularis
ENSRNOG00000008927Hbp19892.427ENSMMUG00000015409HBP19892.816Macaca_mulatta
ENSRNOG00000008927Hbp19886.796ENSMNEG00000037516HBP110085.106Macaca_nemestrina
ENSRNOG00000008927Hbp19992.308ENSMLEG00000031993HBP110092.621Mandrillus_leucophaeus
ENSRNOG00000008927Hbp19362.602ENSMAMG00000023227hbp19963.320Mastacembelus_armatus
ENSRNOG00000008927Hbp19755.186ENSMAMG00000023588-9554.457Mastacembelus_armatus
ENSRNOG00000008927Hbp19459.562ENSMZEG00005005999hbp18160.442Maylandia_zebra
ENSRNOG00000008927Hbp19852.652ENSMZEG00005015065HBP19952.741Maylandia_zebra
ENSRNOG00000008927Hbp19980.497ENSMGAG00000006880HBP19980.497Meleagris_gallopavo
ENSRNOG00000008927Hbp110092.762ENSMAUG00000011449Hbp110093.524Mesocricetus_auratus
ENSRNOG00000008927Hbp110092.952ENSMICG00000012858HBP19994.239Microcebus_murinus
ENSRNOG00000008927Hbp110094.286ENSMOCG00000019227Hbp110094.857Microtus_ochrogaster
ENSRNOG00000008927Hbp19155.301ENSMMOG00000010239-9854.886Mola_mola
ENSRNOG00000008927Hbp19957.553ENSMMOG00000012207hbp110058.382Mola_mola
ENSRNOG00000008927Hbp110088.593ENSMODG00000016376HBP19188.593Monodelphis_domestica
ENSRNOG00000008927Hbp19262.346ENSMALG00000009884hbp19962.551Monopterus_albus
ENSRNOG00000008927Hbp19251.646ENSMALG00000010834-9451.639Monopterus_albus
ENSRNOG00000008927Hbp110096.958MGP_CAROLIEiJ_G0017683Hbp110096.958Mus_caroli
ENSRNOG00000008927Hbp110096.958ENSMUSG00000002996Hbp110096.958Mus_musculus
ENSRNOG00000008927Hbp110096.571MGP_PahariEiJ_G0029441Hbp110096.571Mus_pahari
ENSRNOG00000008927Hbp110096.958MGP_SPRETEiJ_G0018525Hbp110096.958Mus_spretus
ENSRNOG00000008927Hbp110093.321ENSMPUG00000018249HBP110093.321Mustela_putorius_furo
ENSRNOG00000008927Hbp19993.077ENSMLUG00000012425HBP19993.654Myotis_lucifugus
ENSRNOG00000008927Hbp110093.333ENSNGAG00000023485Hbp110093.714Nannospalax_galili
ENSRNOG00000008927Hbp19561.034ENSNBRG00000001405hbp19661.924Neolamprologus_brichardi
ENSRNOG00000008927Hbp19853.409ENSNBRG00000017820-9953.296Neolamprologus_brichardi
ENSRNOG00000008927Hbp19991.794ENSNLEG00000008761HBP110092.621Nomascus_leucogenys
ENSRNOG00000008927Hbp18884.881ENSMEUG00000011116HBP19084.881Notamacropus_eugenii
ENSRNOG00000008927Hbp168100.000ENSOPRG00000005315HBP170100.000Ochotona_princeps
ENSRNOG00000008927Hbp110092.571ENSODEG00000001327-10092.952Octodon_degus
ENSRNOG00000008927Hbp19571.169ENSODEG00000000482-9869.960Octodon_degus
ENSRNOG00000008927Hbp19865.370ENSODEG00000010517-9964.981Octodon_degus
ENSRNOG00000008927Hbp19859.501ENSONIG00000008523hbp19962.168Oreochromis_niloticus
ENSRNOG00000008927Hbp19854.721ENSONIG00000011868-9954.545Oreochromis_niloticus
ENSRNOG00000008927Hbp19881.783ENSOANG00000003174HBP110081.783Ornithorhynchus_anatinus
ENSRNOG00000008927Hbp19889.883ENSOCUG00000012758HBP110090.856Oryctolagus_cuniculus
ENSRNOG00000008927Hbp19360.446ENSORLG00000004396hbp19961.145Oryzias_latipes
ENSRNOG00000008927Hbp19852.581ENSORLG00000009474-9952.500Oryzias_latipes
ENSRNOG00000008927Hbp19358.943ENSORLG00020000370hbp19960.941Oryzias_latipes_hni
ENSRNOG00000008927Hbp19852.863ENSORLG00020004269-9952.783Oryzias_latipes_hni
ENSRNOG00000008927Hbp19358.943ENSORLG00015006557hbp19960.941Oryzias_latipes_hsok
ENSRNOG00000008927Hbp19952.068ENSOMEG00000013045-9952.809Oryzias_melastigma
ENSRNOG00000008927Hbp19360.852ENSOMEG00000012837hbp19961.554Oryzias_melastigma
ENSRNOG00000008927Hbp19892.039ENSOGAG00000013102HBP110092.621Otolemur_garnettii
ENSRNOG00000008927Hbp110091.794ENSOARG00000005055HBP110091.794Ovis_aries
ENSRNOG00000008927Hbp19992.381ENSPPAG00000042116HBP110093.010Pan_paniscus
ENSRNOG00000008927Hbp19892.218ENSPPRG00000007240HBP110092.218Panthera_pardus
ENSRNOG00000008927Hbp19889.883ENSPTIG00000002734HBP110089.883Panthera_tigris_altaica
ENSRNOG00000008927Hbp19992.381ENSPTRG00000019575HBP110093.010Pan_troglodytes
ENSRNOG00000008927Hbp19992.500ENSPANG00000024385HBP110092.816Papio_anubis
ENSRNOG00000008927Hbp110055.449ENSPKIG00000016269HBP110055.067Paramormyrops_kingsleyae
ENSRNOG00000008927Hbp19862.934ENSPKIG00000016967hbp19864.522Paramormyrops_kingsleyae
ENSRNOG00000008927Hbp110082.143ENSPSIG00000012478HBP19482.143Pelodiscus_sinensis
ENSRNOG00000008927Hbp19460.321ENSPMGG00000005789hbp19561.258Periophthalmus_magnuspinnatus
ENSRNOG00000008927Hbp19251.667ENSPMGG00000008031-9351.143Periophthalmus_magnuspinnatus
ENSRNOG00000008927Hbp110094.857ENSPEMG00000014801Hbp110095.429Peromyscus_maniculatus_bairdii
ENSRNOG00000008927Hbp19149.385ENSPMAG00000002631hbp19948.282Petromyzon_marinus
ENSRNOG00000008927Hbp110088.783ENSPCIG00000004275HBP19188.783Phascolarctos_cinereus
ENSRNOG00000008927Hbp19361.460ENSPFOG00000003951hbp19962.372Poecilia_formosa
ENSRNOG00000008927Hbp19853.269ENSPFOG00000012271-9653.077Poecilia_formosa
ENSRNOG00000008927Hbp19361.460ENSPLAG00000003142hbp19962.372Poecilia_latipinna
ENSRNOG00000008927Hbp19155.439ENSPLAG00000012669-9855.230Poecilia_latipinna
ENSRNOG00000008927Hbp19361.460ENSPMEG00000003800hbp19962.372Poecilia_mexicana
ENSRNOG00000008927Hbp19853.077ENSPMEG00000015095-9952.885Poecilia_mexicana
ENSRNOG00000008927Hbp15761.953ENSPREG00000015242-8461.279Poecilia_reticulata
ENSRNOG00000008927Hbp19361.258ENSPREG00000004000hbp19962.168Poecilia_reticulata
ENSRNOG00000008927Hbp110092.952ENSPPYG00000017898HBP19993.333Pongo_abelii
ENSRNOG00000008927Hbp19791.142ENSPCAG00000014060HBP110091.142Procavia_capensis
ENSRNOG00000008927Hbp18393.455ENSPCOG00000015370HBP110094.241Propithecus_coquereli
ENSRNOG00000008927Hbp19892.427ENSPVAG00000014543HBP110093.010Pteropus_vampyrus
ENSRNOG00000008927Hbp19853.598ENSPNYG00000015063HBP19953.686Pundamilia_nyererei
ENSRNOG00000008927Hbp19560.079ENSPNYG00000001079hbp19860.956Pundamilia_nyererei
ENSRNOG00000008927Hbp110065.094ENSPNAG00000029977hbp110065.660Pygocentrus_nattereri
ENSRNOG00000008927Hbp19876.255ENSRBIG00000042410HBP110076.255Rhinopithecus_bieti
ENSRNOG00000008927Hbp19992.308ENSRROG00000036622HBP110092.816Rhinopithecus_roxellana
ENSRNOG00000008927Hbp19992.176ENSSBOG00000023603HBP19896.170Saimiri_boliviensis_boliviensis
ENSRNOG00000008927Hbp110088.023ENSSHAG00000010948HBP110087.452Sarcophilus_harrisii
ENSRNOG00000008927Hbp19866.925ENSSFOG00015011155hbp110067.375Scleropages_formosus
ENSRNOG00000008927Hbp19853.977ENSSMAG00000012631-9453.659Scophthalmus_maximus
ENSRNOG00000008927Hbp19360.852ENSSMAG00000009892hbp19961.759Scophthalmus_maximus
ENSRNOG00000008927Hbp19854.237ENSSDUG00000015387-9654.237Seriola_dumerili
ENSRNOG00000008927Hbp19760.039ENSSDUG00000022273hbp19962.577Seriola_dumerili
ENSRNOG00000008927Hbp19361.663ENSSLDG00000009669hbp19962.577Seriola_lalandi_dorsalis
ENSRNOG00000008927Hbp19255.328ENSSLDG00000017324-9856.122Seriola_lalandi_dorsalis
ENSRNOG00000008927Hbp18891.775ENSSARG00000007731HBP110092.424Sorex_araneus
ENSRNOG00000008927Hbp19982.792ENSSPUG00000019157HBP19582.792Sphenodon_punctatus
ENSRNOG00000008927Hbp19361.963ENSSPAG00000004739hbp19961.963Stegastes_partitus
ENSRNOG00000008927Hbp19853.244ENSSPAG00000009193-9953.232Stegastes_partitus
ENSRNOG00000008927Hbp110093.130ENSSSCG00000035673HBP110093.130Sus_scrofa
ENSRNOG00000008927Hbp19880.577ENSTGUG00000003100HBP110080.577Taeniopygia_guttata
ENSRNOG00000008927Hbp19351.613ENSTRUG00000011881-8051.107Takifugu_rubripes
ENSRNOG00000008927Hbp19360.780ENSTRUG00000016990hbp19961.602Takifugu_rubripes
ENSRNOG00000008927Hbp19349.705ENSTNIG00000002023-9449.705Tetraodon_nigroviridis
ENSRNOG00000008927Hbp19360.446ENSTNIG00000016027hbp19961.350Tetraodon_nigroviridis
ENSRNOG00000008927Hbp19879.612ENSTBEG00000007793HBP110080.194Tupaia_belangeri
ENSRNOG00000008927Hbp19892.412ENSTTRG00000006826HBP110092.412Tursiops_truncatus
ENSRNOG00000008927Hbp110093.321ENSUAMG00000005951HBP110093.321Ursus_americanus
ENSRNOG00000008927Hbp110093.130ENSUMAG00000018257HBP110093.130Ursus_maritimus
ENSRNOG00000008927Hbp18885.302ENSVPAG00000008629HBP110085.302Vicugna_pacos
ENSRNOG00000008927Hbp110092.748ENSVVUG00000022009HBP110092.748Vulpes_vulpes
ENSRNOG00000008927Hbp19876.493ENSXETG00000005922hbp19876.493Xenopus_tropicalis
ENSRNOG00000008927Hbp19260.736ENSXCOG00000020795hbp19161.649Xiphophorus_couchianus
ENSRNOG00000008927Hbp19852.091ENSXMAG00000007586-9953.077Xiphophorus_maculatus
ENSRNOG00000008927Hbp19759.423ENSXMAG00000016455hbp19961.963Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II15024088.IDAProcess
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding15024088.IDAFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific15024088.IDAFunction
GO:0003674molecular_function-NDFunction
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-IEAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0006355regulation of transcription, DNA-templated7937077.NASProcess
GO:0016055Wnt signaling pathway-IEAProcess
GO:0016607nuclear speck-IEAComponent
GO:0016607nuclear speck-ISOComponent
GO:0032369negative regulation of lipid transport-ISOProcess
GO:0043268positive regulation of potassium ion transport7937077.IDAProcess
GO:1903427negative regulation of reactive oxygen species biosynthetic process-ISOProcess

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