EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009015 (Gene tree)
Gene ID: 313166
Gene Symbol: Nfx1
Alias: LOC313166
Full Name: nuclear transcription factor%2C X-box binding 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 57565 bases
Position: chr5:57291156-57348720
Accession: 1310277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000057423	R3H	PF01424.22	3.5e-20	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000060692	-	4631	-	ENSRNOP00000057423	1114 (aa)	-	D4AE50
ENSRNOT00000060691	-	2457	XM_008763623	ENSRNOP00000057422	818 (aa)	XP_008761845	Q4V7B3

Gene Model

Click here to download ENSRNOG00000009015's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05165	Human papillomavirus infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009015's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009015	Nfx1	100	88.304	ENSG00000086102	NFX1	100	88.304	Homo_sapiens
ENSRNOG00000009015	Nfx1	73	65.892	ENSAPOG00000016671	si:dkey-10f23.2	76	65.892	Acanthochromis_polyacanthus
ENSRNOG00000009015	Nfx1	100	88.036	ENSAMEG00000007472	NFX1	100	88.036	Ailuropoda_melanoleuca
ENSRNOG00000009015	Nfx1	73	64.181	ENSACIG00000021055	si:dkey-10f23.2	77	64.548	Amphilophus_citrinellus
ENSRNOG00000009015	Nfx1	73	65.648	ENSAOCG00000017316	si:dkey-10f23.2	81	65.648	Amphiprion_ocellaris
ENSRNOG00000009015	Nfx1	73	65.526	ENSAPEG00000012401	si:dkey-10f23.2	79	65.526	Amphiprion_percula
ENSRNOG00000009015	Nfx1	75	61.859	ENSATEG00000002080	si:dkey-10f23.2	75	62.287	Anabas_testudineus
ENSRNOG00000009015	Nfx1	99	59.194	ENSAPLG00000005524	NFX1	99	60.123	Anas_platyrhynchos
ENSRNOG00000009015	Nfx1	100	59.240	ENSACAG00000002412	NFX1	100	58.709	Anolis_carolinensis
ENSRNOG00000009015	Nfx1	100	88.225	ENSANAG00000001809	NFX1	100	88.225	Aotus_nancymaae
ENSRNOG00000009015	Nfx1	73	66.091	ENSACLG00000003795	si:dkey-10f23.2	76	66.091	Astatotilapia_calliptera
ENSRNOG00000009015	Nfx1	75	59.488	ENSAMXG00000006963	si:dkey-10f23.2	77	59.488	Astyanax_mexicanus
ENSRNOG00000009015	Nfx1	100	87.143	ENSBTAG00000012385	NFX1	100	86.696	Bos_taurus
ENSRNOG00000009015	Nfx1	73	38.406	WBGene00007048	nfx-1	69	39.544	Caenorhabditis_elegans
ENSRNOG00000009015	Nfx1	100	88.561	ENSCJAG00000008142	NFX1	100	88.561	Callithrix_jacchus
ENSRNOG00000009015	Nfx1	100	88.246	ENSCAFG00000001848	NFX1	100	88.246	Canis_familiaris
ENSRNOG00000009015	Nfx1	100	88.561	ENSCAFG00020015630	NFX1	100	88.561	Canis_lupus_dingo
ENSRNOG00000009015	Nfx1	100	87.232	ENSCHIG00000020037	NFX1	100	86.786	Capra_hircus
ENSRNOG00000009015	Nfx1	100	88.304	ENSTSYG00000004125	NFX1	100	88.750	Carlito_syrichta
ENSRNOG00000009015	Nfx1	87	79.817	ENSCAPG00000005611	NFX1	100	79.817	Cavia_aperea
ENSRNOG00000009015	Nfx1	100	87.757	ENSCPOG00000003470	NFX1	100	87.757	Cavia_porcellus
ENSRNOG00000009015	Nfx1	100	88.482	ENSCCAG00000025001	NFX1	100	88.482	Cebus_capucinus
ENSRNOG00000009015	Nfx1	100	83.646	ENSCLAG00000002893	NFX1	100	84.629	Chinchilla_lanigera
ENSRNOG00000009015	Nfx1	100	88.125	ENSCSAG00000009971	NFX1	100	88.125	Chlorocebus_sabaeus
ENSRNOG00000009015	Nfx1	89	84.314	ENSCHOG00000009225	NFX1	91	84.314	Choloepus_hoffmanni
ENSRNOG00000009015	Nfx1	99	63.668	ENSCPBG00000017928	NFX1	98	63.228	Chrysemys_picta_bellii
ENSRNOG00000009015	Nfx1	72	46.856	ENSCING00000004746	nf-x-like	70	46.986	Ciona_intestinalis
ENSRNOG00000009015	Nfx1	72	46.429	ENSCSAVG00000005762	-	71	46.429	Ciona_savignyi
ENSRNOG00000009015	Nfx1	100	85.409	ENSCANG00000028364	NFX1	100	85.409	Colobus_angolensis_palliatus
ENSRNOG00000009015	Nfx1	99	90.145	ENSCGRG00001002869	Nfx1	100	90.145	Cricetulus_griseus_chok1gshd
ENSRNOG00000009015	Nfx1	99	94.027	ENSCGRG00000016032	Nfx1	100	94.027	Cricetulus_griseus_crigri
ENSRNOG00000009015	Nfx1	72	63.391	ENSCSEG00000019832	si:dkey-10f23.2	78	63.945	Cynoglossus_semilaevis
ENSRNOG00000009015	Nfx1	72	66.213	ENSCVAG00000010039	si:dkey-10f23.2	75	66.213	Cyprinodon_variegatus
ENSRNOG00000009015	Nfx1	70	65.565	ENSDARG00000105669	NFX1	100	51.627	Danio_rerio
ENSRNOG00000009015	Nfx1	100	83.363	ENSDNOG00000002079	NFX1	100	83.363	Dasypus_novemcinctus
ENSRNOG00000009015	Nfx1	99	82.749	ENSDORG00000001989	Nfx1	99	82.749	Dipodomys_ordii
ENSRNOG00000009015	Nfx1	67	43.876	FBgn0001978	stc	65	43.810	Drosophila_melanogaster
ENSRNOG00000009015	Nfx1	97	82.418	ENSETEG00000001427	NFX1	95	82.418	Echinops_telfairi
ENSRNOG00000009015	Nfx1	71	56.045	ENSEBUG00000006923	si:dkey-10f23.2	62	56.211	Eptatretus_burgeri
ENSRNOG00000009015	Nfx1	100	87.589	ENSEASG00005004230	NFX1	93	87.589	Equus_asinus_asinus
ENSRNOG00000009015	Nfx1	100	87.500	ENSECAG00000021305	NFX1	93	87.500	Equus_caballus
ENSRNOG00000009015	Nfx1	96	86.949	ENSEEUG00000001694	NFX1	88	86.949	Erinaceus_europaeus
ENSRNOG00000009015	Nfx1	70	62.310	ENSELUG00000007422	si:dkey-10f23.2	70	61.929	Esox_lucius
ENSRNOG00000009015	Nfx1	100	88.025	ENSFCAG00000007905	NFX1	100	88.025	Felis_catus
ENSRNOG00000009015	Nfx1	99	61.342	ENSFALG00000013143	NFX1	99	61.077	Ficedula_albicollis
ENSRNOG00000009015	Nfx1	100	88.919	ENSFDAG00000012320	NFX1	100	88.919	Fukomys_damarensis
ENSRNOG00000009015	Nfx1	72	65.594	ENSFHEG00000017330	si:dkey-10f23.2	75	65.594	Fundulus_heteroclitus
ENSRNOG00000009015	Nfx1	66	63.686	ENSGMOG00000006198	si:dkey-10f23.2	99	63.686	Gadus_morhua
ENSRNOG00000009015	Nfx1	100	60.333	ENSGALG00000043724	NFX1	100	59.982	Gallus_gallus
ENSRNOG00000009015	Nfx1	72	64.312	ENSGAFG00000000226	si:dkey-10f23.2	76	64.312	Gambusia_affinis
ENSRNOG00000009015	Nfx1	66	64.247	ENSGACG00000004560	si:dkey-10f23.2	98	64.247	Gasterosteus_aculeatus
ENSRNOG00000009015	Nfx1	100	88.304	ENSGGOG00000006751	NFX1	100	88.304	Gorilla_gorilla
ENSRNOG00000009015	Nfx1	73	66.091	ENSHBUG00000015403	si:dkey-10f23.2	76	66.091	Haplochromis_burtoni
ENSRNOG00000009015	Nfx1	100	89.276	ENSHGLG00000008375	NFX1	100	89.276	Heterocephalus_glaber_female
ENSRNOG00000009015	Nfx1	100	89.276	ENSHGLG00100016433	NFX1	100	89.276	Heterocephalus_glaber_male
ENSRNOG00000009015	Nfx1	71	64.313	ENSHCOG00000001235	si:dkey-10f23.2	78	64.313	Hippocampus_comes
ENSRNOG00000009015	Nfx1	70	65.096	ENSIPUG00000005961	si:dkey-10f23.2	72	65.096	Ictalurus_punctatus
ENSRNOG00000009015	Nfx1	100	89.008	ENSSTOG00000006984	NFX1	100	89.008	Ictidomys_tridecemlineatus
ENSRNOG00000009015	Nfx1	100	88.988	ENSJJAG00000023303	Nfx1	100	88.988	Jaculus_jaculus
ENSRNOG00000009015	Nfx1	86	57.688	ENSKMAG00000016306	si:dkey-10f23.2	92	55.760	Kryptolebias_marmoratus
ENSRNOG00000009015	Nfx1	73	61.111	ENSLBEG00000013253	si:dkey-10f23.2	74	61.111	Labrus_bergylta
ENSRNOG00000009015	Nfx1	99	58.028	ENSLACG00000000769	NFX1	98	62.672	Latimeria_chalumnae
ENSRNOG00000009015	Nfx1	98	54.356	ENSLOCG00000011211	si:dkey-10f23.2	91	68.813	Lepisosteus_oculatus
ENSRNOG00000009015	Nfx1	100	88.125	ENSMFAG00000038715	NFX1	100	88.125	Macaca_fascicularis
ENSRNOG00000009015	Nfx1	100	88.036	ENSMMUG00000043096	NFX1	100	88.036	Macaca_mulatta
ENSRNOG00000009015	Nfx1	100	88.125	ENSMNEG00000036057	NFX1	100	88.125	Macaca_nemestrina
ENSRNOG00000009015	Nfx1	100	88.125	ENSMLEG00000040882	NFX1	100	88.125	Mandrillus_leucophaeus
ENSRNOG00000009015	Nfx1	78	61.705	ENSMAMG00000010139	si:dkey-10f23.2	80	61.705	Mastacembelus_armatus
ENSRNOG00000009015	Nfx1	73	66.091	ENSMZEG00005018390	si:dkey-10f23.2	76	66.337	Maylandia_zebra
ENSRNOG00000009015	Nfx1	100	85.995	ENSMICG00000012124	NFX1	100	85.995	Microcebus_murinus
ENSRNOG00000009015	Nfx1	100	92.639	ENSMOCG00000007616	Nfx1	100	92.639	Microtus_ochrogaster
ENSRNOG00000009015	Nfx1	75	60.024	ENSMMOG00000004171	si:dkey-10f23.2	92	60.024	Mola_mola
ENSRNOG00000009015	Nfx1	100	69.893	ENSMODG00000003990	NFX1	100	69.893	Monodelphis_domestica
ENSRNOG00000009015	Nfx1	73	63.780	ENSMALG00000017326	si:dkey-10f23.2	88	63.780	Monopterus_albus
ENSRNOG00000009015	Nfx1	100	96.140	MGP_CAROLIEiJ_G0025904	Nfx1	100	96.140	Mus_caroli
ENSRNOG00000009015	Nfx1	100	96.320	ENSMUSG00000028423	Nfx1	100	96.320	Mus_musculus
ENSRNOG00000009015	Nfx1	100	96.050	MGP_PahariEiJ_G0024027	Nfx1	100	96.050	Mus_pahari
ENSRNOG00000009015	Nfx1	100	96.140	MGP_SPRETEiJ_G0026852	Nfx1	100	96.140	Mus_spretus
ENSRNOG00000009015	Nfx1	100	88.561	ENSMPUG00000004111	NFX1	100	88.561	Mustela_putorius_furo
ENSRNOG00000009015	Nfx1	100	86.146	ENSMLUG00000011069	NFX1	100	85.613	Myotis_lucifugus
ENSRNOG00000009015	Nfx1	100	91.562	ENSNGAG00000005385	Nfx1	100	91.562	Nannospalax_galili
ENSRNOG00000009015	Nfx1	73	65.764	ENSNBRG00000013449	si:dkey-10f23.2	75	65.764	Neolamprologus_brichardi
ENSRNOG00000009015	Nfx1	100	88.304	ENSNLEG00000005096	NFX1	100	88.304	Nomascus_leucogenys
ENSRNOG00000009015	Nfx1	99	72.048	ENSMEUG00000012002	NFX1	94	72.048	Notamacropus_eugenii
ENSRNOG00000009015	Nfx1	100	77.079	ENSOPRG00000009816	NFX1	100	77.191	Ochotona_princeps
ENSRNOG00000009015	Nfx1	100	87.846	ENSODEG00000015229	NFX1	100	87.846	Octodon_degus
ENSRNOG00000009015	Nfx1	70	65.947	ENSONIG00000006192	si:dkey-10f23.2	71	66.023	Oreochromis_niloticus
ENSRNOG00000009015	Nfx1	100	56.437	ENSOANG00000002524	NFX1	100	56.437	Ornithorhynchus_anatinus
ENSRNOG00000009015	Nfx1	100	83.557	ENSOCUG00000008957	NFX1	100	83.914	Oryctolagus_cuniculus
ENSRNOG00000009015	Nfx1	80	59.101	ENSORLG00000026662	si:dkey-10f23.2	91	59.101	Oryzias_latipes
ENSRNOG00000009015	Nfx1	80	59.320	ENSORLG00020000170	si:dkey-10f23.2	91	59.320	Oryzias_latipes_hni
ENSRNOG00000009015	Nfx1	80	58.991	ENSORLG00015008191	si:dkey-10f23.2	81	61.530	Oryzias_latipes_hsok
ENSRNOG00000009015	Nfx1	78	61.644	ENSOMEG00000001814	si:dkey-10f23.2	83	61.644	Oryzias_melastigma
ENSRNOG00000009015	Nfx1	100	85.804	ENSOGAG00000000775	NFX1	100	85.804	Otolemur_garnettii
ENSRNOG00000009015	Nfx1	100	86.976	ENSOARG00000009478	NFX1	100	86.530	Ovis_aries
ENSRNOG00000009015	Nfx1	100	88.304	ENSPPAG00000027871	NFX1	100	88.304	Pan_paniscus
ENSRNOG00000009015	Nfx1	100	88.293	ENSPPRG00000000665	NFX1	100	88.293	Panthera_pardus
ENSRNOG00000009015	Nfx1	100	88.293	ENSPTIG00000012443	NFX1	100	88.293	Panthera_tigris_altaica
ENSRNOG00000009015	Nfx1	100	88.304	ENSPTRG00000020858	NFX1	100	88.304	Pan_troglodytes
ENSRNOG00000009015	Nfx1	100	88.036	ENSPANG00000025304	NFX1	100	88.036	Papio_anubis
ENSRNOG00000009015	Nfx1	77	63.741	ENSPKIG00000016899	si:dkey-10f23.2	79	63.857	Paramormyrops_kingsleyae
ENSRNOG00000009015	Nfx1	99	62.719	ENSPSIG00000008420	NFX1	99	62.368	Pelodiscus_sinensis
ENSRNOG00000009015	Nfx1	100	94.075	ENSPEMG00000007625	Nfx1	100	94.075	Peromyscus_maniculatus_bairdii
ENSRNOG00000009015	Nfx1	70	56.320	ENSPMAG00000003556	si:dkey-10f23.2	100	56.320	Petromyzon_marinus
ENSRNOG00000009015	Nfx1	77	62.413	ENSPFOG00000012547	si:dkey-10f23.2	80	62.413	Poecilia_formosa
ENSRNOG00000009015	Nfx1	77	62.065	ENSPLAG00000010574	si:dkey-10f23.2	80	62.065	Poecilia_latipinna
ENSRNOG00000009015	Nfx1	72	64.932	ENSPMEG00000015322	si:dkey-10f23.2	76	64.932	Poecilia_mexicana
ENSRNOG00000009015	Nfx1	72	65.180	ENSPREG00000006186	si:dkey-10f23.2	76	65.180	Poecilia_reticulata
ENSRNOG00000009015	Nfx1	63	93.400	ENSPPYG00000019136	-	100	93.400	Pongo_abelii
ENSRNOG00000009015	Nfx1	99	70.901	ENSPCAG00000006913	NFX1	100	70.901	Procavia_capensis
ENSRNOG00000009015	Nfx1	100	88.482	ENSPCOG00000015789	NFX1	100	88.482	Propithecus_coquereli
ENSRNOG00000009015	Nfx1	100	80.089	ENSPVAG00000011479	NFX1	100	80.089	Pteropus_vampyrus
ENSRNOG00000009015	Nfx1	73	66.091	ENSPNYG00000002175	si:dkey-10f23.2	76	66.091	Pundamilia_nyererei
ENSRNOG00000009015	Nfx1	71	63.970	ENSPNAG00000016667	si:dkey-10f23.2	71	63.970	Pygocentrus_nattereri
ENSRNOG00000009015	Nfx1	100	62.104	ENSRBIG00000036482	NFX1	100	73.734	Rhinopithecus_bieti
ENSRNOG00000009015	Nfx1	100	88.214	ENSRROG00000026461	NFX1	100	88.214	Rhinopithecus_roxellana
ENSRNOG00000009015	Nfx1	100	79.821	ENSSBOG00000035261	NFX1	100	79.821	Saimiri_boliviensis_boliviensis
ENSRNOG00000009015	Nfx1	100	69.912	ENSSHAG00000010272	NFX1	100	69.912	Sarcophilus_harrisii
ENSRNOG00000009015	Nfx1	100	53.552	ENSSFOG00015019271	si:dkey-10f23.2	100	53.464	Scleropages_formosus
ENSRNOG00000009015	Nfx1	73	64.181	ENSSMAG00000015963	si:dkey-10f23.2	77	64.181	Scophthalmus_maximus
ENSRNOG00000009015	Nfx1	73	64.871	ENSSDUG00000009395	si:dkey-10f23.2	97	52.952	Seriola_dumerili
ENSRNOG00000009015	Nfx1	73	64.994	ENSSLDG00000023817	si:dkey-10f23.2	97	52.952	Seriola_lalandi_dorsalis
ENSRNOG00000009015	Nfx1	72	96.875	ENSSARG00000014320	NFX1	82	96.875	Sorex_araneus
ENSRNOG00000009015	Nfx1	74	64.927	ENSSPAG00000012861	si:dkey-10f23.2	76	64.927	Stegastes_partitus
ENSRNOG00000009015	Nfx1	100	84.848	ENSSSCG00000010994	NFX1	100	84.848	Sus_scrofa
ENSRNOG00000009015	Nfx1	71	67.257	ENSTGUG00000007055	NFX1	100	67.004	Taeniopygia_guttata
ENSRNOG00000009015	Nfx1	62	88.172	ENSTBEG00000004560	NFX1	59	88.172	Tupaia_belangeri
ENSRNOG00000009015	Nfx1	100	91.529	ENSTTRG00000010576	NFX1	93	91.529	Tursiops_truncatus
ENSRNOG00000009015	Nfx1	100	88.204	ENSUMAG00000006016	NFX1	100	88.204	Ursus_maritimus
ENSRNOG00000009015	Nfx1	100	88.304	ENSVVUG00000021100	NFX1	100	88.304	Vulpes_vulpes
ENSRNOG00000009015	Nfx1	99	59.019	ENSXETG00000014997	nfx1	100	58.932	Xenopus_tropicalis
ENSRNOG00000009015	Nfx1	72	64.436	ENSXMAG00000001963	si:dkey-10f23.2	76	64.436	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0045347	negative regulation of MHC class II biosynthetic process	-	IEA	Process
GO:0045347	negative regulation of MHC class II biosynthetic process	-	ISO	Process