EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009084 (Gene tree)
Gene ID: 362416
Gene Symbol: Rpusd3
Alias: LOC362416|RGD1307582
Full Name: RNA pseudouridine synthase D3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 4228 bases
Position: chr4:145366765-145370992
Accession: 1307582
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000059503	PseudoU_synth_2	PF00849.22	5.9e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068001	-	1407	XM_006237044	ENSRNOP00000059503	320 (aa)	XP_006237106	D4A6T2

Gene Model

Click here to download ENSRNOG00000009084's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009084's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000009084	Rpusd3	77	32.308	ENSRNOG00000011567	Rpusd4	64	32.308

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009084	Rpusd3	100	71.429	ENSG00000156990	RPUSD3	98	71.429	Homo_sapiens
ENSRNOG00000009084	Rpusd3	100	67.442	ENSAMEG00000016227	RPUSD3	98	67.442	Ailuropoda_melanoleuca
ENSRNOG00000009084	Rpusd3	77	54.839	ENSACAG00000009836	RPUSD3	70	54.839	Anolis_carolinensis
ENSRNOG00000009084	Rpusd3	54	65.775	ENSANAG00000038118	-	89	65.775	Aotus_nancymaae
ENSRNOG00000009084	Rpusd3	72	52.713	ENSANAG00000007127	-	91	53.514	Aotus_nancymaae
ENSRNOG00000009084	Rpusd3	54	67.021	ENSANAG00000019945	-	75	67.021	Aotus_nancymaae
ENSRNOG00000009084	Rpusd3	100	68.023	ENSBTAG00000007968	RPUSD3	100	68.023	Bos_taurus
ENSRNOG00000009084	Rpusd3	100	67.442	ENSCAFG00000029733	RPUSD3	98	67.442	Canis_familiaris
ENSRNOG00000009084	Rpusd3	100	67.442	ENSCAFG00020008582	RPUSD3	98	67.442	Canis_lupus_dingo
ENSRNOG00000009084	Rpusd3	100	68.657	ENSCHIG00000026027	RPUSD3	100	68.657	Capra_hircus
ENSRNOG00000009084	Rpusd3	96	71.562	ENSTSYG00000009994	RPUSD3	95	71.562	Carlito_syrichta
ENSRNOG00000009084	Rpusd3	78	73.494	ENSCAPG00000017559	RPUSD3	94	73.494	Cavia_aperea
ENSRNOG00000009084	Rpusd3	78	73.092	ENSCPOG00000037956	RPUSD3	90	61.261	Cavia_porcellus
ENSRNOG00000009084	Rpusd3	96	72.871	ENSCCAG00000029530	RPUSD3	95	72.871	Cebus_capucinus
ENSRNOG00000009084	Rpusd3	100	72.036	ENSCATG00000036939	RPUSD3	98	72.036	Cercocebus_atys
ENSRNOG00000009084	Rpusd3	100	68.314	ENSCSAG00000010506	RPUSD3	98	68.314	Chlorocebus_sabaeus
ENSRNOG00000009084	Rpusd3	50	80.952	ENSCHOG00000010151	-	61	80.952	Choloepus_hoffmanni
ENSRNOG00000009084	Rpusd3	77	53.441	ENSCPBG00000008825	RPUSD3	92	53.441	Chrysemys_picta_bellii
ENSRNOG00000009084	Rpusd3	100	71.125	ENSCANG00000040711	RPUSD3	98	71.125	Colobus_angolensis_palliatus
ENSRNOG00000009084	Rpusd3	100	79.360	ENSCGRG00001004923	Rpusd3	95	79.360	Cricetulus_griseus_chok1gshd
ENSRNOG00000009084	Rpusd3	100	79.360	ENSCGRG00000018315	Rpusd3	100	79.360	Cricetulus_griseus_crigri
ENSRNOG00000009084	Rpusd3	97	67.868	ENSDNOG00000039160	RPUSD3	88	67.868	Dasypus_novemcinctus
ENSRNOG00000009084	Rpusd3	83	69.259	ENSDORG00000026827	Rpusd3	93	69.259	Dipodomys_ordii
ENSRNOG00000009084	Rpusd3	97	65.075	ENSETEG00000006538	RPUSD3	95	65.075	Echinops_telfairi
ENSRNOG00000009084	Rpusd3	100	68.314	ENSEASG00005014160	RPUSD3	96	68.314	Equus_asinus_asinus
ENSRNOG00000009084	Rpusd3	100	68.895	ENSECAG00000019988	RPUSD3	96	68.895	Equus_caballus
ENSRNOG00000009084	Rpusd3	66	72.170	ENSEEUG00000007353	RPUSD3	60	72.170	Erinaceus_europaeus
ENSRNOG00000009084	Rpusd3	100	69.909	ENSFCAG00000014199	RPUSD3	98	69.909	Felis_catus
ENSRNOG00000009084	Rpusd3	78	51.190	ENSFALG00000012968	RPUSD3	91	51.190	Ficedula_albicollis
ENSRNOG00000009084	Rpusd3	78	74.297	ENSFDAG00000008350	RPUSD3	77	74.297	Fukomys_damarensis
ENSRNOG00000009084	Rpusd3	95	46.278	ENSGAGG00000007493	RPUSD3	96	46.926	Gopherus_agassizii
ENSRNOG00000009084	Rpusd3	100	71.733	ENSGGOG00000013120	RPUSD3	98	71.733	Gorilla_gorilla
ENSRNOG00000009084	Rpusd3	83	69.395	ENSHGLG00000011722	RPUSD3	72	69.395	Heterocephalus_glaber_female
ENSRNOG00000009084	Rpusd3	83	69.395	ENSHGLG00100016038	RPUSD3	72	69.395	Heterocephalus_glaber_male
ENSRNOG00000009084	Rpusd3	100	67.246	ENSSTOG00000002125	RPUSD3	98	67.246	Ictidomys_tridecemlineatus
ENSRNOG00000009084	Rpusd3	100	66.860	ENSJJAG00000012679	Rpusd3	100	66.860	Jaculus_jaculus
ENSRNOG00000009084	Rpusd3	97	67.868	ENSLAFG00000017501	RPUSD3	97	67.868	Loxodonta_africana
ENSRNOG00000009084	Rpusd3	100	71.429	ENSMFAG00000032407	RPUSD3	98	71.429	Macaca_fascicularis
ENSRNOG00000009084	Rpusd3	100	71.733	ENSMMUG00000010628	RPUSD3	98	71.733	Macaca_mulatta
ENSRNOG00000009084	Rpusd3	100	71.733	ENSMNEG00000040308	RPUSD3	98	71.733	Macaca_nemestrina
ENSRNOG00000009084	Rpusd3	100	71.733	ENSMLEG00000033940	RPUSD3	98	71.733	Mandrillus_leucophaeus
ENSRNOG00000009084	Rpusd3	100	79.651	ENSMAUG00000015473	Rpusd3	100	79.651	Mesocricetus_auratus
ENSRNOG00000009084	Rpusd3	96	67.976	ENSMICG00000002315	RPUSD3	96	67.976	Microcebus_murinus
ENSRNOG00000009084	Rpusd3	100	79.942	ENSMOCG00000022613	Rpusd3	100	79.942	Microtus_ochrogaster
ENSRNOG00000009084	Rpusd3	90	53.289	ENSMODG00000005210	RPUSD3	80	53.289	Monodelphis_domestica
ENSRNOG00000009084	Rpusd3	100	82.558	MGP_CAROLIEiJ_G0028725	Rpusd3	100	83.582	Mus_caroli
ENSRNOG00000009084	Rpusd3	100	82.558	ENSMUSG00000051169	Rpusd3	100	82.558	Mus_musculus
ENSRNOG00000009084	Rpusd3	100	83.140	MGP_PahariEiJ_G0022476	Rpusd3	99	84.270	Mus_pahari
ENSRNOG00000009084	Rpusd3	100	83.140	MGP_SPRETEiJ_G0029753	Rpusd3	100	83.209	Mus_spretus
ENSRNOG00000009084	Rpusd3	100	65.988	ENSMPUG00000017132	RPUSD3	98	65.988	Mustela_putorius_furo
ENSRNOG00000009084	Rpusd3	100	67.733	ENSMLUG00000006135	RPUSD3	99	67.733	Myotis_lucifugus
ENSRNOG00000009084	Rpusd3	99	72.222	ENSNGAG00000023704	Rpusd3	99	72.222	Nannospalax_galili
ENSRNOG00000009084	Rpusd3	98	58.462	ENSNLEG00000004214	RPUSD3	91	66.321	Nomascus_leucogenys
ENSRNOG00000009084	Rpusd3	77	63.158	ENSMEUG00000013098	-	95	63.158	Notamacropus_eugenii
ENSRNOG00000009084	Rpusd3	96	54.683	ENSOPRG00000002300	RPUSD3	94	54.683	Ochotona_princeps
ENSRNOG00000009084	Rpusd3	78	71.888	ENSODEG00000018137	RPUSD3	86	71.888	Octodon_degus
ENSRNOG00000009084	Rpusd3	84	42.958	ENSOANG00000012081	-	99	42.958	Ornithorhynchus_anatinus
ENSRNOG00000009084	Rpusd3	100	57.681	ENSOCUG00000027885	RPUSD3	100	57.681	Oryctolagus_cuniculus
ENSRNOG00000009084	Rpusd3	90	70.627	ENSOGAG00000012592	RPUSD3	96	70.627	Otolemur_garnettii
ENSRNOG00000009084	Rpusd3	100	68.023	ENSOARG00000005928	RPUSD3	98	68.023	Ovis_aries
ENSRNOG00000009084	Rpusd3	100	71.125	ENSPPAG00000038083	RPUSD3	98	71.125	Pan_paniscus
ENSRNOG00000009084	Rpusd3	100	70.393	ENSPPRG00000024433	RPUSD3	98	70.393	Panthera_pardus
ENSRNOG00000009084	Rpusd3	100	70.821	ENSPTIG00000006828	RPUSD3	98	70.821	Panthera_tigris_altaica
ENSRNOG00000009084	Rpusd3	100	71.125	ENSPTRG00000051760	RPUSD3	98	71.125	Pan_troglodytes
ENSRNOG00000009084	Rpusd3	100	72.036	ENSPANG00000023885	RPUSD3	98	72.036	Papio_anubis
ENSRNOG00000009084	Rpusd3	100	80.059	ENSPEMG00000017245	Rpusd3	100	79.651	Peromyscus_maniculatus_bairdii
ENSRNOG00000009084	Rpusd3	89	56.811	ENSPCIG00000021901	RPUSD3	86	56.811	Phascolarctos_cinereus
ENSRNOG00000009084	Rpusd3	100	68.895	ENSPPYG00000013676	RPUSD3	98	68.895	Pongo_abelii
ENSRNOG00000009084	Rpusd3	80	53.025	ENSPCAG00000013731	-	97	53.025	Procavia_capensis
ENSRNOG00000009084	Rpusd3	96	75.000	ENSPCOG00000018314	RPUSD3	94	75.000	Propithecus_coquereli
ENSRNOG00000009084	Rpusd3	100	66.570	ENSPVAG00000011107	RPUSD3	98	66.570	Pteropus_vampyrus
ENSRNOG00000009084	Rpusd3	99	72.086	ENSRBIG00000041230	RPUSD3	97	72.086	Rhinopithecus_bieti
ENSRNOG00000009084	Rpusd3	99	68.915	ENSRROG00000043328	RPUSD3	97	68.915	Rhinopithecus_roxellana
ENSRNOG00000009084	Rpusd3	96	72.240	ENSSBOG00000036106	RPUSD3	95	72.240	Saimiri_boliviensis_boliviensis
ENSRNOG00000009084	Rpusd3	89	54.667	ENSSHAG00000015536	RPUSD3	96	54.667	Sarcophilus_harrisii
ENSRNOG00000009084	Rpusd3	96	67.164	ENSSSCG00000011555	RPUSD3	95	67.164	Sus_scrofa
ENSRNOG00000009084	Rpusd3	68	51.835	ENSTGUG00000008744	RPUSD3	89	51.208	Taeniopygia_guttata
ENSRNOG00000009084	Rpusd3	78	66.909	ENSTBEG00000000176	RPUSD3	95	66.909	Tupaia_belangeri
ENSRNOG00000009084	Rpusd3	100	68.023	ENSTTRG00000007544	RPUSD3	98	68.023	Tursiops_truncatus
ENSRNOG00000009084	Rpusd3	90	71.947	ENSUAMG00000011354	RPUSD3	94	71.947	Ursus_americanus
ENSRNOG00000009084	Rpusd3	100	68.314	ENSUMAG00000018830	RPUSD3	98	68.314	Ursus_maritimus
ENSRNOG00000009084	Rpusd3	100	68.605	ENSVVUG00000023735	RPUSD3	100	68.605	Vulpes_vulpes
ENSRNOG00000009084	Rpusd3	77	48.387	ENSXETG00000023546	rpusd3	87	48.387	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0070131	positive regulation of mitochondrial translation	-	IEA	Process
GO:0070131	positive regulation of mitochondrial translation	-	ISO	Process