EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009156 (Gene tree)
Gene ID: 500116
Gene Symbol: Tra2a
Alias: LOC500116|RGD1562563
Full Name: transformer 2 alpha homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 18802 bases
Position: chr4:78905380-78924181
Accession: 1562563
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000012325	RRM_1	PF00076.22	1.6e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000012325	-	1857	XM_006236464	ENSRNOP00000012325	282 (aa)	XP_006236526	B1WC25

Gene Model

Click here to download ENSRNOG00000009156's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009156's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000009156	Tra2a	59	37.097	ENSRNOG00000023601	Elavl4	66	35.821
ENSRNOG00000009156	Tra2a	64	55.665	ENSRNOG00000005867	AABR07061152.1	57	60.625
ENSRNOG00000009156	Tra2a	60	65.263	ENSRNOG00000001783	Tra2b	80	64.919
ENSRNOG00000009156	Tra2a	59	31.250	ENSRNOG00000006853	Elavl2	67	35.821

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009156	Tra2a	100	98.592	ENSG00000164548	TRA2A	100	98.907	Homo_sapiens
ENSRNOG00000009156	Tra2a	90	69.597	ENSAPOG00000017425	tra2a	90	74.359	Acanthochromis_polyacanthus
ENSRNOG00000009156	Tra2a	95	96.337	ENSAMEG00000003501	TRA2A	84	96.337	Ailuropoda_melanoleuca
ENSRNOG00000009156	Tra2a	55	86.364	ENSACIG00000001333	tra2a	79	86.364	Amphilophus_citrinellus
ENSRNOG00000009156	Tra2a	90	70.330	ENSAOCG00000015445	tra2a	90	75.092	Amphiprion_ocellaris
ENSRNOG00000009156	Tra2a	90	70.330	ENSAPEG00000018557	tra2a	90	75.092	Amphiprion_percula
ENSRNOG00000009156	Tra2a	90	72.161	ENSATEG00000000671	tra2a	90	76.557	Anabas_testudineus
ENSRNOG00000009156	Tra2a	85	89.796	ENSAPLG00000013689	TRA2A	90	90.612	Anas_platyrhynchos
ENSRNOG00000009156	Tra2a	100	95.423	ENSACAG00000013502	TRA2A	100	95.423	Anolis_carolinensis
ENSRNOG00000009156	Tra2a	90	76.190	ENSACLG00000024845	tra2a	90	78.022	Astatotilapia_calliptera
ENSRNOG00000009156	Tra2a	61	90.751	ENSAMXG00000005553	tra2a	98	86.420	Astyanax_mexicanus
ENSRNOG00000009156	Tra2a	100	98.239	ENSBTAG00000012622	TRA2A	100	98.239	Bos_taurus
ENSRNOG00000009156	Tra2a	94	96.617	ENSCJAG00000045802	-	100	96.617	Callithrix_jacchus
ENSRNOG00000009156	Tra2a	100	98.592	ENSCJAG00000001509	-	100	98.592	Callithrix_jacchus
ENSRNOG00000009156	Tra2a	99	98.221	ENSCAFG00000002788	TRA2A	100	98.221	Canis_familiaris
ENSRNOG00000009156	Tra2a	90	97.266	ENSCAFG00020002745	TRA2A	95	97.266	Canis_lupus_dingo
ENSRNOG00000009156	Tra2a	100	98.592	ENSTSYG00000000388	TRA2A	100	98.907	Carlito_syrichta
ENSRNOG00000009156	Tra2a	86	83.607	ENSCAPG00000017377	TRA2A	87	84.362	Cavia_aperea
ENSRNOG00000009156	Tra2a	100	98.592	ENSCPOG00000010739	TRA2A	100	98.592	Cavia_porcellus
ENSRNOG00000009156	Tra2a	100	98.592	ENSCCAG00000019576	TRA2A	100	98.907	Cebus_capucinus
ENSRNOG00000009156	Tra2a	100	98.592	ENSCATG00000041219	TRA2A	100	98.907	Cercocebus_atys
ENSRNOG00000009156	Tra2a	100	98.592	ENSCLAG00000007917	TRA2A	100	98.592	Chinchilla_lanigera
ENSRNOG00000009156	Tra2a	99	98.577	ENSCSAG00000014051	TRA2A	99	98.577	Chlorocebus_sabaeus
ENSRNOG00000009156	Tra2a	100	98.239	ENSCHOG00000001130	TRA2A	100	98.239	Choloepus_hoffmanni
ENSRNOG00000009156	Tra2a	100	95.105	ENSCPBG00000022466	TRA2A	100	95.105	Chrysemys_picta_bellii
ENSRNOG00000009156	Tra2a	100	98.592	ENSCANG00000031292	TRA2A	100	98.907	Colobus_angolensis_palliatus
ENSRNOG00000009156	Tra2a	100	100.000	ENSCGRG00001019980	Tra2a	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000009156	Tra2a	96	100.000	ENSCGRG00000006087	Tra2a	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000009156	Tra2a	90	73.162	ENSCSEG00000012193	tra2a	90	73.529	Cynoglossus_semilaevis
ENSRNOG00000009156	Tra2a	90	77.206	ENSDARG00000007863	tra2a	87	80.925	Danio_rerio
ENSRNOG00000009156	Tra2a	100	98.239	ENSDNOG00000039446	TRA2A	100	98.239	Dasypus_novemcinctus
ENSRNOG00000009156	Tra2a	100	99.291	ENSDORG00000009361	Tra2a	100	99.291	Dipodomys_ordii
ENSRNOG00000009156	Tra2a	100	82.230	ENSETEG00000007250	TRA2A	100	82.230	Echinops_telfairi
ENSRNOG00000009156	Tra2a	100	98.239	ENSEASG00005022002	TRA2A	100	98.239	Equus_asinus_asinus
ENSRNOG00000009156	Tra2a	100	98.239	ENSECAG00000011508	TRA2A	100	98.239	Equus_caballus
ENSRNOG00000009156	Tra2a	100	97.535	ENSEEUG00000015674	TRA2A	100	97.535	Erinaceus_europaeus
ENSRNOG00000009156	Tra2a	76	75.214	ENSELUG00000005846	tra2a	91	70.034	Esox_lucius
ENSRNOG00000009156	Tra2a	100	98.239	ENSFCAG00000005361	TRA2A	100	98.239	Felis_catus
ENSRNOG00000009156	Tra2a	96	93.382	ENSFALG00000009605	TRA2A	100	93.382	Ficedula_albicollis
ENSRNOG00000009156	Tra2a	100	98.592	ENSFDAG00000004949	TRA2A	100	98.592	Fukomys_damarensis
ENSRNOG00000009156	Tra2a	90	70.909	ENSGMOG00000013740	tra2a	91	71.273	Gadus_morhua
ENSRNOG00000009156	Tra2a	90	90.272	ENSGALG00000010973	TRA2A	90	91.051	Gallus_gallus
ENSRNOG00000009156	Tra2a	90	76.172	ENSGACG00000006878	tra2a	89	76.172	Gasterosteus_aculeatus
ENSRNOG00000009156	Tra2a	100	94.406	ENSGAGG00000005793	TRA2A	100	94.406	Gopherus_agassizii
ENSRNOG00000009156	Tra2a	100	98.592	ENSGGOG00000009053	TRA2A	100	98.592	Gorilla_gorilla
ENSRNOG00000009156	Tra2a	90	76.923	ENSHBUG00000018234	tra2a	90	78.755	Haplochromis_burtoni
ENSRNOG00000009156	Tra2a	100	98.592	ENSHGLG00000012168	TRA2A	100	98.592	Heterocephalus_glaber_female
ENSRNOG00000009156	Tra2a	100	98.592	ENSHGLG00100014577	TRA2A	100	98.592	Heterocephalus_glaber_male
ENSRNOG00000009156	Tra2a	62	61.979	ENSHCOG00000006320	tra2a	95	61.257	Hippocampus_comes
ENSRNOG00000009156	Tra2a	65	64.583	ENSHCOG00000006314	tra2a	66	66.443	Hippocampus_comes
ENSRNOG00000009156	Tra2a	100	98.592	ENSSTOG00000012073	TRA2A	100	98.592	Ictidomys_tridecemlineatus
ENSRNOG00000009156	Tra2a	100	99.291	ENSJJAG00000022787	Tra2a	100	99.291	Jaculus_jaculus
ENSRNOG00000009156	Tra2a	85	73.946	ENSLBEG00000005297	tra2a	63	78.723	Labrus_bergylta
ENSRNOG00000009156	Tra2a	90	85.098	ENSLACG00000014765	TRA2A	90	86.667	Latimeria_chalumnae
ENSRNOG00000009156	Tra2a	90	75.458	ENSLOCG00000011615	-	90	75.824	Lepisosteus_oculatus
ENSRNOG00000009156	Tra2a	100	98.944	ENSLAFG00000006598	TRA2A	100	98.944	Loxodonta_africana
ENSRNOG00000009156	Tra2a	100	98.592	ENSMFAG00000043211	TRA2A	100	98.907	Macaca_fascicularis
ENSRNOG00000009156	Tra2a	100	98.592	ENSMMUG00000006286	TRA2A	100	98.592	Macaca_mulatta
ENSRNOG00000009156	Tra2a	100	98.592	ENSMNEG00000040670	TRA2A	100	98.907	Macaca_nemestrina
ENSRNOG00000009156	Tra2a	100	98.592	ENSMLEG00000032154	TRA2A	100	98.907	Mandrillus_leucophaeus
ENSRNOG00000009156	Tra2a	76	78.112	ENSMAMG00000008575	tra2a	90	80.603	Mastacembelus_armatus
ENSRNOG00000009156	Tra2a	90	76.190	ENSMZEG00005009142	tra2a	90	78.022	Maylandia_zebra
ENSRNOG00000009156	Tra2a	90	87.549	ENSMGAG00000010514	TRA2A	89	90.612	Meleagris_gallopavo
ENSRNOG00000009156	Tra2a	100	77.305	ENSMICG00000036849	-	88	76.680	Microcebus_murinus
ENSRNOG00000009156	Tra2a	100	98.239	ENSMICG00000043639	-	100	98.907	Microcebus_murinus
ENSRNOG00000009156	Tra2a	70	81.910	ENSMOCG00000006467	-	97	83.417	Microtus_ochrogaster
ENSRNOG00000009156	Tra2a	63	89.944	ENSMOCG00000010249	-	88	90.909	Microtus_ochrogaster
ENSRNOG00000009156	Tra2a	87	78.629	ENSMMOG00000020174	tra2a	83	78.512	Mola_mola
ENSRNOG00000009156	Tra2a	100	96.831	ENSMODG00000000807	TRA2A	100	96.831	Monodelphis_domestica
ENSRNOG00000009156	Tra2a	85	76.154	ENSMALG00000020875	tra2a	90	76.642	Monopterus_albus
ENSRNOG00000009156	Tra2a	100	100.000	ENSMUSG00000029817	Tra2a	100	100.000	Mus_musculus
ENSRNOG00000009156	Tra2a	100	99.645	MGP_PahariEiJ_G0022115	Tra2a	100	99.645	Mus_pahari
ENSRNOG00000009156	Tra2a	100	100.000	MGP_SPRETEiJ_G0029368	Tra2a	100	100.000	Mus_spretus
ENSRNOG00000009156	Tra2a	100	97.887	ENSMPUG00000013480	TRA2A	100	97.887	Mustela_putorius_furo
ENSRNOG00000009156	Tra2a	100	97.887	ENSMLUG00000013972	TRA2A	100	97.887	Myotis_lucifugus
ENSRNOG00000009156	Tra2a	100	98.582	ENSNGAG00000023805	Tra2a	100	98.582	Nannospalax_galili
ENSRNOG00000009156	Tra2a	55	89.610	ENSNBRG00000005992	tra2a	73	89.610	Neolamprologus_brichardi
ENSRNOG00000009156	Tra2a	65	71.038	ENSNLEG00000029659	-	88	75.325	Nomascus_leucogenys
ENSRNOG00000009156	Tra2a	100	98.592	ENSNLEG00000014794	TRA2A	100	98.907	Nomascus_leucogenys
ENSRNOG00000009156	Tra2a	100	96.466	ENSMEUG00000001202	TRA2A	100	96.466	Notamacropus_eugenii
ENSRNOG00000009156	Tra2a	100	97.183	ENSOPRG00000007606	TRA2A	100	97.183	Ochotona_princeps
ENSRNOG00000009156	Tra2a	100	98.592	ENSODEG00000008335	TRA2A	100	98.592	Octodon_degus
ENSRNOG00000009156	Tra2a	90	76.087	ENSONIG00000004503	tra2a	90	77.899	Oreochromis_niloticus
ENSRNOG00000009156	Tra2a	89	86.822	ENSOANG00000014202	TRA2A	90	86.822	Ornithorhynchus_anatinus
ENSRNOG00000009156	Tra2a	100	98.239	ENSOCUG00000024139	TRA2A	100	98.239	Oryctolagus_cuniculus
ENSRNOG00000009156	Tra2a	82	69.264	ENSORLG00000022191	tra2a	60	73.373	Oryzias_latipes
ENSRNOG00000009156	Tra2a	82	68.831	ENSORLG00020003490	tra2a	60	72.781	Oryzias_latipes_hni
ENSRNOG00000009156	Tra2a	82	68.398	ENSORLG00015015485	tra2a	60	72.189	Oryzias_latipes_hsok
ENSRNOG00000009156	Tra2a	82	67.532	ENSOMEG00000017864	tra2a	60	71.006	Oryzias_melastigma
ENSRNOG00000009156	Tra2a	99	95.745	ENSOGAG00000009733	TRA2A	99	95.745	Otolemur_garnettii
ENSRNOG00000009156	Tra2a	100	97.183	ENSOARG00000013147	TRA2A	100	97.183	Ovis_aries
ENSRNOG00000009156	Tra2a	100	91.519	ENSOARG00000002323	-	100	91.519	Ovis_aries
ENSRNOG00000009156	Tra2a	99	98.577	ENSPPAG00000034382	TRA2A	99	98.889	Pan_paniscus
ENSRNOG00000009156	Tra2a	100	98.239	ENSPPRG00000015216	TRA2A	100	98.239	Panthera_pardus
ENSRNOG00000009156	Tra2a	100	98.239	ENSPTIG00000021114	TRA2A	100	98.239	Panthera_tigris_altaica
ENSRNOG00000009156	Tra2a	100	98.592	ENSPTRG00000046098	-	100	98.592	Pan_troglodytes
ENSRNOG00000009156	Tra2a	100	98.592	ENSPTRG00000018988	TRA2A	100	98.907	Pan_troglodytes
ENSRNOG00000009156	Tra2a	100	98.592	ENSPANG00000014541	TRA2A	100	98.592	Papio_anubis
ENSRNOG00000009156	Tra2a	90	76.384	ENSPKIG00000012298	tra2a	90	76.384	Paramormyrops_kingsleyae
ENSRNOG00000009156	Tra2a	88	91.633	ENSPSIG00000014993	TRA2A	90	92.032	Pelodiscus_sinensis
ENSRNOG00000009156	Tra2a	100	99.645	ENSPEMG00000008564	-	100	99.645	Peromyscus_maniculatus_bairdii
ENSRNOG00000009156	Tra2a	63	68.889	ENSPMAG00000007947	tra2a	59	68.862	Petromyzon_marinus
ENSRNOG00000009156	Tra2a	100	96.831	ENSPCIG00000007917	TRA2A	100	96.831	Phascolarctos_cinereus
ENSRNOG00000009156	Tra2a	100	98.592	ENSPPYG00000017728	TRA2A	100	98.592	Pongo_abelii
ENSRNOG00000009156	Tra2a	99	98.221	ENSPCAG00000004148	TRA2A	100	98.221	Procavia_capensis
ENSRNOG00000009156	Tra2a	100	84.155	ENSPCOG00000020465	TRA2A	100	84.155	Propithecus_coquereli
ENSRNOG00000009156	Tra2a	100	98.592	ENSPVAG00000011298	TRA2A	100	98.592	Pteropus_vampyrus
ENSRNOG00000009156	Tra2a	55	89.103	ENSPNYG00000020134	tra2a	76	90.385	Pundamilia_nyererei
ENSRNOG00000009156	Tra2a	90	73.432	ENSPNAG00000000482	tra2a	90	73.801	Pygocentrus_nattereri
ENSRNOG00000009156	Tra2a	100	98.239	ENSRROG00000030758	TRA2A	100	98.907	Rhinopithecus_roxellana
ENSRNOG00000009156	Tra2a	100	98.592	ENSSBOG00000031562	TRA2A	100	98.907	Saimiri_boliviensis_boliviensis
ENSRNOG00000009156	Tra2a	89	92.857	ENSSHAG00000005727	TRA2A	88	93.254	Sarcophilus_harrisii
ENSRNOG00000009156	Tra2a	90	81.028	ENSSFOG00015014004	tra2a	90	75.646	Scleropages_formosus
ENSRNOG00000009156	Tra2a	93	71.127	ENSSMAG00000014242	tra2a	90	71.429	Scophthalmus_maximus
ENSRNOG00000009156	Tra2a	90	82.031	ENSSDUG00000005610	tra2a	89	84.766	Seriola_dumerili
ENSRNOG00000009156	Tra2a	55	87.013	ENSSLDG00000025577	tra2a	81	87.013	Seriola_lalandi_dorsalis
ENSRNOG00000009156	Tra2a	79	100.000	ENSSARG00000012900	TRA2A	80	100.000	Sorex_araneus
ENSRNOG00000009156	Tra2a	100	96.516	ENSSPUG00000006143	TRA2A	100	96.516	Sphenodon_punctatus
ENSRNOG00000009156	Tra2a	90	73.260	ENSSPAG00000004184	tra2a	90	78.022	Stegastes_partitus
ENSRNOG00000009156	Tra2a	100	98.239	ENSSSCG00000015387	TRA2A	100	98.239	Sus_scrofa
ENSRNOG00000009156	Tra2a	61	88.953	ENSTGUG00000002795	TRA2A	62	88.166	Taeniopygia_guttata
ENSRNOG00000009156	Tra2a	100	83.333	ENSTBEG00000013773	TRA2A	100	83.333	Tupaia_belangeri
ENSRNOG00000009156	Tra2a	100	97.887	ENSTTRG00000008922	TRA2A	100	97.887	Tursiops_truncatus
ENSRNOG00000009156	Tra2a	65	98.361	ENSUMAG00000001181	TRA2A	94	98.361	Ursus_maritimus
ENSRNOG00000009156	Tra2a	100	84.155	ENSVPAG00000001829	TRA2A	100	84.155	Vicugna_pacos
ENSRNOG00000009156	Tra2a	100	98.239	ENSVVUG00000001045	TRA2A	100	98.239	Vulpes_vulpes
ENSRNOG00000009156	Tra2a	90	83.270	ENSXETG00000007397	tra2a	90	83.650	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005515	protein binding	10564280.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component