EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009196 (Gene tree)
Gene ID: 311909
Gene Symbol: Rc3h2
Alias: LOC311909|Mnab
Full Name: ring finger and CCCH-type domains 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 46974 bases
Position: chr3:21623041-21670014
Accession: 1304833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000075040	zf-CCCH	PF00642.24	1.4e-06	1	1
ENSRNOP00000012354	zf-CCCH	PF00642.24	1.5e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000078718	-	3763	-	ENSRNOP00000075040	1143 (aa)	-	A0A0G2K9L3
ENSRNOT00000012354	-	3814	XM_008761754	ENSRNOP00000012354	1187 (aa)	XP_008759976	D3ZBM2

Gene Model

Click here to download ENSRNOG00000009196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009196's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009196	Rc3h2	100	95.634	ENSG00000056586	RC3H2	100	95.634	Homo_sapiens
ENSRNOG00000009196	Rc3h2	95	56.594	ENSAPOG00000002117	rc3h2	93	56.731	Acanthochromis_polyacanthus
ENSRNOG00000009196	Rc3h2	100	95.802	ENSAMEG00000006498	RC3H2	100	95.802	Ailuropoda_melanoleuca
ENSRNOG00000009196	Rc3h2	95	56.943	ENSAPEG00000007757	rc3h2	93	56.906	Amphiprion_percula
ENSRNOG00000009196	Rc3h2	94	56.802	ENSATEG00000019414	rc3h2	91	56.499	Anabas_testudineus
ENSRNOG00000009196	Rc3h2	100	90.193	ENSAPLG00000013920	RC3H2	100	90.193	Anas_platyrhynchos
ENSRNOG00000009196	Rc3h2	100	95.718	ENSANAG00000030862	RC3H2	100	95.718	Aotus_nancymaae
ENSRNOG00000009196	Rc3h2	94	56.168	ENSACLG00000023136	rc3h2	92	56.168	Astatotilapia_calliptera
ENSRNOG00000009196	Rc3h2	84	58.522	ENSAMXG00000006778	rc3h2	93	55.032	Astyanax_mexicanus
ENSRNOG00000009196	Rc3h2	100	95.206	ENSBTAG00000023867	RC3H2	100	95.206	Bos_taurus
ENSRNOG00000009196	Rc3h2	100	95.718	ENSCJAG00000020050	RC3H2	100	95.718	Callithrix_jacchus
ENSRNOG00000009196	Rc3h2	100	95.627	ENSCAFG00020015288	RC3H2	100	95.627	Canis_lupus_dingo
ENSRNOG00000009196	Rc3h2	100	95.122	ENSCHIG00000019319	RC3H2	100	95.122	Capra_hircus
ENSRNOG00000009196	Rc3h2	87	79.720	ENSCAPG00000017086	RC3H2	93	79.920	Cavia_aperea
ENSRNOG00000009196	Rc3h2	100	95.875	ENSCPOG00000008511	RC3H2	100	95.875	Cavia_porcellus
ENSRNOG00000009196	Rc3h2	100	95.627	ENSCCAG00000001404	RC3H2	100	95.627	Cebus_capucinus
ENSRNOG00000009196	Rc3h2	100	95.970	ENSCATG00000036655	RC3H2	100	95.970	Cercocebus_atys
ENSRNOG00000009196	Rc3h2	100	95.875	ENSCLAG00000013261	RC3H2	100	95.875	Chinchilla_lanigera
ENSRNOG00000009196	Rc3h2	89	95.480	ENSCSAG00000013416	RC3H2	100	95.480	Chlorocebus_sabaeus
ENSRNOG00000009196	Rc3h2	100	89.513	ENSCPBG00000009811	RC3H2	100	89.513	Chrysemys_picta_bellii
ENSRNOG00000009196	Rc3h2	100	95.970	ENSCANG00000043140	RC3H2	100	95.970	Colobus_angolensis_palliatus
ENSRNOG00000009196	Rc3h2	100	95.875	ENSCGRG00001010006	Rc3h2	100	95.118	Cricetulus_griseus_chok1gshd
ENSRNOG00000009196	Rc3h2	90	96.210	ENSCGRG00000009255	Rc3h2	100	96.210	Cricetulus_griseus_crigri
ENSRNOG00000009196	Rc3h2	94	54.943	ENSCSEG00000017460	rc3h2	96	55.940	Cynoglossus_semilaevis
ENSRNOG00000009196	Rc3h2	94	56.604	ENSCVAG00000012202	rc3h2	91	56.244	Cyprinodon_variegatus
ENSRNOG00000009196	Rc3h2	94	54.529	ENSDARG00000063050	rc3h2	96	54.662	Danio_rerio
ENSRNOG00000009196	Rc3h2	100	94.533	ENSDNOG00000014557	RC3H2	100	94.533	Dasypus_novemcinctus
ENSRNOG00000009196	Rc3h2	100	95.455	ENSDORG00000006398	Rc3h2	100	95.455	Dipodomys_ordii
ENSRNOG00000009196	Rc3h2	100	92.851	ENSEASG00005020897	RC3H2	100	92.851	Equus_asinus_asinus
ENSRNOG00000009196	Rc3h2	100	95.879	ENSECAG00000022176	RC3H2	100	95.879	Equus_caballus
ENSRNOG00000009196	Rc3h2	94	57.866	ENSELUG00000006105	rc3h2	93	57.246	Esox_lucius
ENSRNOG00000009196	Rc3h2	100	95.795	ENSFCAG00000007375	RC3H2	100	95.795	Felis_catus
ENSRNOG00000009196	Rc3h2	100	90.109	ENSFALG00000002011	RC3H2	100	90.109	Ficedula_albicollis
ENSRNOG00000009196	Rc3h2	100	96.465	ENSFDAG00000012477	RC3H2	100	96.465	Fukomys_damarensis
ENSRNOG00000009196	Rc3h2	95	55.516	ENSFHEG00000012272	rc3h2	93	55.467	Fundulus_heteroclitus
ENSRNOG00000009196	Rc3h2	67	53.038	ENSGMOG00000016709	-	100	52.725	Gadus_morhua
ENSRNOG00000009196	Rc3h2	100	90.193	ENSGALG00000001253	RC3H2	100	90.193	Gallus_gallus
ENSRNOG00000009196	Rc3h2	95	55.674	ENSGAFG00000007679	rc3h2	96	55.408	Gambusia_affinis
ENSRNOG00000009196	Rc3h2	73	59.510	ENSGACG00000017369	rc3h2	100	86.878	Gasterosteus_aculeatus
ENSRNOG00000009196	Rc3h2	100	89.606	ENSGAGG00000018295	RC3H2	100	89.606	Gopherus_agassizii
ENSRNOG00000009196	Rc3h2	100	95.802	ENSGGOG00000017062	RC3H2	100	95.802	Gorilla_gorilla
ENSRNOG00000009196	Rc3h2	94	56.814	ENSHBUG00000003976	rc3h2	92	56.814	Haplochromis_burtoni
ENSRNOG00000009196	Rc3h2	100	96.215	ENSHGLG00100018015	RC3H2	100	96.215	Heterocephalus_glaber_male
ENSRNOG00000009196	Rc3h2	83	57.900	ENSHCOG00000003006	rc3h2	87	57.525	Hippocampus_comes
ENSRNOG00000009196	Rc3h2	94	52.394	ENSIPUG00000021433	rc3h2	96	53.006	Ictalurus_punctatus
ENSRNOG00000009196	Rc3h2	100	96.128	ENSSTOG00000010655	RC3H2	100	96.128	Ictidomys_tridecemlineatus
ENSRNOG00000009196	Rc3h2	100	96.134	ENSJJAG00000022376	Rc3h2	100	96.134	Jaculus_jaculus
ENSRNOG00000009196	Rc3h2	94	56.796	ENSKMAG00000010936	rc3h2	91	56.486	Kryptolebias_marmoratus
ENSRNOG00000009196	Rc3h2	97	61.465	ENSLOCG00000002894	rc3h2	94	61.955	Lepisosteus_oculatus
ENSRNOG00000009196	Rc3h2	100	94.365	ENSLAFG00000003521	RC3H2	100	94.365	Loxodonta_africana
ENSRNOG00000009196	Rc3h2	100	95.970	ENSMFAG00000035621	RC3H2	100	100.000	Macaca_fascicularis
ENSRNOG00000009196	Rc3h2	100	96.332	ENSMMUG00000021134	RC3H2	100	95.970	Macaca_mulatta
ENSRNOG00000009196	Rc3h2	100	95.970	ENSMNEG00000031599	RC3H2	100	95.970	Macaca_nemestrina
ENSRNOG00000009196	Rc3h2	99	95.679	ENSMLEG00000033809	RC3H2	99	96.356	Mandrillus_leucophaeus
ENSRNOG00000009196	Rc3h2	94	56.814	ENSMZEG00005017019	rc3h2	92	56.814	Maylandia_zebra
ENSRNOG00000009196	Rc3h2	100	90.126	ENSMGAG00000007984	RC3H2	100	90.126	Meleagris_gallopavo
ENSRNOG00000009196	Rc3h2	84	91.914	ENSMAUG00000003117	Rc3h2	95	90.526	Mesocricetus_auratus
ENSRNOG00000009196	Rc3h2	100	95.458	ENSMICG00000003227	RC3H2	100	95.458	Microcebus_murinus
ENSRNOG00000009196	Rc3h2	100	96.128	ENSMOCG00000009592	Rc3h2	100	96.128	Microtus_ochrogaster
ENSRNOG00000009196	Rc3h2	77	86.534	ENSMMOG00000021305	rc3h2	96	86.534	Mola_mola
ENSRNOG00000009196	Rc3h2	98	92.424	ENSMODG00000019725	RC3H2	79	92.424	Monodelphis_domestica
ENSRNOG00000009196	Rc3h2	100	96.293	MGP_CAROLIEiJ_G0023516	Rc3h2	100	96.293	Mus_caroli
ENSRNOG00000009196	Rc3h2	100	98.484	ENSMUSG00000075376	Rc3h2	100	98.484	Mus_musculus
ENSRNOG00000009196	Rc3h2	100	98.905	MGP_PahariEiJ_G0024969	Rc3h2	100	98.905	Mus_pahari
ENSRNOG00000009196	Rc3h2	100	98.736	MGP_SPRETEiJ_G0024436	Rc3h2	100	98.736	Mus_spretus
ENSRNOG00000009196	Rc3h2	100	95.458	ENSMPUG00000014141	RC3H2	100	95.458	Mustela_putorius_furo
ENSRNOG00000009196	Rc3h2	100	94.538	ENSMLUG00000013992	RC3H2	100	94.538	Myotis_lucifugus
ENSRNOG00000009196	Rc3h2	94	56.549	ENSNBRG00000009276	rc3h2	92	56.549	Neolamprologus_brichardi
ENSRNOG00000009196	Rc3h2	100	94.710	ENSNLEG00000017204	RC3H2	100	94.710	Nomascus_leucogenys
ENSRNOG00000009196	Rc3h2	60	99.209	ENSMEUG00000001299	-	64	99.209	Notamacropus_eugenii
ENSRNOG00000009196	Rc3h2	85	90.875	ENSOPRG00000000135	RC3H2	93	90.875	Ochotona_princeps
ENSRNOG00000009196	Rc3h2	94	59.021	ENSONIG00000003945	rc3h2	100	59.021	Oreochromis_niloticus
ENSRNOG00000009196	Rc3h2	94	92.037	ENSOANG00000008194	RC3H2	100	92.037	Ornithorhynchus_anatinus
ENSRNOG00000009196	Rc3h2	100	95.875	ENSOCUG00000008804	RC3H2	100	95.875	Oryctolagus_cuniculus
ENSRNOG00000009196	Rc3h2	94	56.217	ENSORLG00000010018	rc3h2	92	56.178	Oryzias_latipes
ENSRNOG00000009196	Rc3h2	94	56.317	ENSORLG00020013257	rc3h2	92	56.278	Oryzias_latipes_hni
ENSRNOG00000009196	Rc3h2	94	56.228	ENSORLG00015001525	rc3h2	92	56.189	Oryzias_latipes_hsok
ENSRNOG00000009196	Rc3h2	95	56.437	ENSOMEG00000023540	rc3h2	93	56.388	Oryzias_melastigma
ENSRNOG00000009196	Rc3h2	100	95.130	ENSOGAG00000010678	RC3H2	100	95.130	Otolemur_garnettii
ENSRNOG00000009196	Rc3h2	100	95.046	ENSOARG00000013965	RC3H2	100	95.046	Ovis_aries
ENSRNOG00000009196	Rc3h2	100	95.718	ENSPPAG00000036013	RC3H2	100	95.718	Pan_paniscus
ENSRNOG00000009196	Rc3h2	100	95.718	ENSPPRG00000008698	RC3H2	100	95.718	Panthera_pardus
ENSRNOG00000009196	Rc3h2	100	95.718	ENSPTIG00000014257	RC3H2	100	95.718	Panthera_tigris_altaica
ENSRNOG00000009196	Rc3h2	100	95.718	ENSPTRG00000021339	RC3H2	100	95.718	Pan_troglodytes
ENSRNOG00000009196	Rc3h2	100	94.207	ENSPANG00000025840	RC3H2	100	94.207	Papio_anubis
ENSRNOG00000009196	Rc3h2	97	60.749	ENSPKIG00000021910	rc3h2	91	60.250	Paramormyrops_kingsleyae
ENSRNOG00000009196	Rc3h2	100	89.858	ENSPSIG00000005393	RC3H2	100	89.858	Pelodiscus_sinensis
ENSRNOG00000009196	Rc3h2	81	82.942	ENSPMGG00000023963	rc3h2	94	86.682	Periophthalmus_magnuspinnatus
ENSRNOG00000009196	Rc3h2	100	96.549	ENSPEMG00000023441	Rc3h2	100	96.549	Peromyscus_maniculatus_bairdii
ENSRNOG00000009196	Rc3h2	93	99.546	ENSPCIG00000025559	RC3H2	100	92.044	Phascolarctos_cinereus
ENSRNOG00000009196	Rc3h2	94	54.749	ENSPFOG00000019699	rc3h2	100	58.390	Poecilia_formosa
ENSRNOG00000009196	Rc3h2	69	77.885	ENSPLAG00000005799	rc3h2	89	77.885	Poecilia_latipinna
ENSRNOG00000009196	Rc3h2	95	54.787	ENSPMEG00000014187	rc3h2	93	55.289	Poecilia_mexicana
ENSRNOG00000009196	Rc3h2	100	52.852	ENSPREG00000008979	rc3h2	98	53.154	Poecilia_reticulata
ENSRNOG00000009196	Rc3h2	87	87.747	ENSPCAG00000010154	RC3H2	86	87.747	Procavia_capensis
ENSRNOG00000009196	Rc3h2	94	56.168	ENSPNYG00000012063	rc3h2	92	56.168	Pundamilia_nyererei
ENSRNOG00000009196	Rc3h2	85	59.470	ENSPNAG00000017502	rc3h2	88	59.346	Pygocentrus_nattereri
ENSRNOG00000009196	Rc3h2	99	95.671	ENSRBIG00000032579	RC3H2	100	96.089	Rhinopithecus_bieti
ENSRNOG00000009196	Rc3h2	100	95.963	ENSRROG00000043784	RC3H2	100	95.963	Rhinopithecus_roxellana
ENSRNOG00000009196	Rc3h2	100	95.634	ENSSBOG00000029100	RC3H2	100	95.634	Saimiri_boliviensis_boliviensis
ENSRNOG00000009196	Rc3h2	100	91.639	ENSSHAG00000007498	RC3H2	100	91.639	Sarcophilus_harrisii
ENSRNOG00000009196	Rc3h2	94	56.776	ENSSMAG00000020048	rc3h2	93	56.579	Scophthalmus_maximus
ENSRNOG00000009196	Rc3h2	95	56.780	ENSSDUG00000016022	rc3h2	93	57.005	Seriola_dumerili
ENSRNOG00000009196	Rc3h2	95	56.681	ENSSLDG00000016070	rc3h2	93	56.743	Seriola_lalandi_dorsalis
ENSRNOG00000009196	Rc3h2	100	94.039	ENSSARG00000012329	RC3H2	100	94.039	Sorex_araneus
ENSRNOG00000009196	Rc3h2	100	87.207	ENSSPUG00000001457	RC3H2	100	87.207	Sphenodon_punctatus
ENSRNOG00000009196	Rc3h2	95	56.696	ENSSPAG00000005233	rc3h2	93	56.545	Stegastes_partitus
ENSRNOG00000009196	Rc3h2	100	95.630	ENSSSCG00000005575	RC3H2	100	95.630	Sus_scrofa
ENSRNOG00000009196	Rc3h2	100	90.193	ENSTGUG00000006889	-	100	90.193	Taeniopygia_guttata
ENSRNOG00000009196	Rc3h2	85	59.196	ENSTNIG00000004942	rc3h2	100	59.178	Tetraodon_nigroviridis
ENSRNOG00000009196	Rc3h2	78	98.611	ENSTBEG00000009622	RC3H2	86	98.611	Tupaia_belangeri
ENSRNOG00000009196	Rc3h2	94	96.671	ENSTTRG00000016954	RC3H2	94	96.671	Tursiops_truncatus
ENSRNOG00000009196	Rc3h2	100	96.047	ENSUAMG00000015355	RC3H2	100	96.047	Ursus_americanus
ENSRNOG00000009196	Rc3h2	100	96.047	ENSUMAG00000003161	RC3H2	100	96.047	Ursus_maritimus
ENSRNOG00000009196	Rc3h2	100	95.130	ENSVPAG00000005994	RC3H2	100	95.130	Vicugna_pacos
ENSRNOG00000009196	Rc3h2	100	95.458	ENSVVUG00000009519	RC3H2	100	95.458	Vulpes_vulpes
ENSRNOG00000009196	Rc3h2	84	58.342	ENSXCOG00000005002	rc3h2	97	84.989	Xiphophorus_couchianus
ENSRNOG00000009196	Rc3h2	94	56.143	ENSXMAG00000001724	rc3h2	91	55.835	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000209	protein polyubiquitination	-	IEA	Process
GO:0000209	protein polyubiquitination	-	ISO	Process
GO:0001782	B cell homeostasis	-	IEA	Process
GO:0001782	B cell homeostasis	-	ISO	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003725	double-stranded RNA binding	-	IEA	Function
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0004842	ubiquitin-protein transferase activity	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0009791	post-embryonic development	-	IEA	Process
GO:0009791	post-embryonic development	-	ISO	Process
GO:0009986	cell surface	-	IEA	Component
GO:0009986	cell surface	-	ISO	Component
GO:0010468	regulation of gene expression	-	ISO	Process
GO:0010608	posttranscriptional regulation of gene expression	-	IEA	Process
GO:0010608	posttranscriptional regulation of gene expression	-	ISO	Process
GO:0016020	membrane	-	IEA	Component
GO:0016020	membrane	-	ISO	Component
GO:0016567	protein ubiquitination	-	IEA	Process
GO:0035264	multicellular organism growth	-	IEA	Process
GO:0035264	multicellular organism growth	-	ISO	Process
GO:0035613	RNA stem-loop binding	-	IEA	Function
GO:0035613	RNA stem-loop binding	-	ISO	Function
GO:0042098	T cell proliferation	-	IEA	Process
GO:0042098	T cell proliferation	-	ISO	Process
GO:0043029	T cell homeostasis	-	IEA	Process
GO:0043029	T cell homeostasis	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	IEA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0048286	lung alveolus development	-	IEA	Process
GO:0048286	lung alveolus development	-	ISO	Process
GO:0048535	lymph node development	-	IEA	Process
GO:0048535	lymph node development	-	ISO	Process
GO:0048536	spleen development	-	IEA	Process
GO:0048536	spleen development	-	ISO	Process
GO:0050852	T cell receptor signaling pathway	-	IEA	Process
GO:0050852	T cell receptor signaling pathway	-	ISO	Process
GO:0060173	limb development	-	IEA	Process
GO:0060173	limb development	-	ISO	Process
GO:0061470	T follicular helper cell differentiation	-	IEA	Process
GO:0061470	T follicular helper cell differentiation	-	ISO	Process
GO:1901224	positive regulation of NIK/NF-kappaB signaling	-	IEA	Process
GO:1901224	positive regulation of NIK/NF-kappaB signaling	-	ISO	Process
GO:2000320	negative regulation of T-helper 17 cell differentiation	-	IEA	Process
GO:2000320	negative regulation of T-helper 17 cell differentiation	-	ISO	Process
GO:2000628	regulation of miRNA metabolic process	-	IEA	Process
GO:2000628	regulation of miRNA metabolic process	-	ISO	Process