EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009218 (Gene tree)
Gene ID: 688699
Gene Symbol: Prdm12
Alias: LOC688699
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 14703 bases
Position: chr3:10181924-10196626
Accession: 1586401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000012234	zf-C2H2	PF00096.26	9e-13	1	2
ENSRNOP00000012234	zf-C2H2	PF00096.26	9e-13	2	2
ENSRNOP00000012234	zf-met	PF12874.7	7.9e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000012234	-	1561	XM_001067974	ENSRNOP00000012234	365 (aa)	XP_001067974	D3ZEJ0

Gene Model

Click here to download ENSRNOG00000009218's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009218's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000009218	Prdm12	68	43.529	ENSRNOG00000023679	Prdm5	94	43.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009218	Prdm12	100	98.093	ENSG00000130711	PRDM12	100	98.093	Homo_sapiens
ENSRNOG00000009218	Prdm12	99	75.065	ENSAPOG00000016051	prdm12b	92	79.096	Acanthochromis_polyacanthus
ENSRNOG00000009218	Prdm12	99	63.061	ENSAPOG00000018234	-	93	66.860	Acanthochromis_polyacanthus
ENSRNOG00000009218	Prdm12	88	94.427	ENSAMEG00000016234	PRDM12	99	94.427	Ailuropoda_melanoleuca
ENSRNOG00000009218	Prdm12	99	75.907	ENSACIG00000005193	-	91	80.290	Amphilophus_citrinellus
ENSRNOG00000009218	Prdm12	99	74.737	ENSACIG00000019578	prdm12b	93	79.943	Amphilophus_citrinellus
ENSRNOG00000009218	Prdm12	99	76.115	ENSAOCG00000015040	prdm12b	92	80.571	Amphiprion_ocellaris
ENSRNOG00000009218	Prdm12	99	76.720	ENSAPEG00000015092	prdm12b	92	81.268	Amphiprion_percula
ENSRNOG00000009218	Prdm12	100	72.656	ENSAPEG00000022849	-	89	78.363	Amphiprion_percula
ENSRNOG00000009218	Prdm12	99	75.325	ENSATEG00000014595	-	96	82.371	Anabas_testudineus
ENSRNOG00000009218	Prdm12	93	98.235	ENSANAG00000020616	PRDM12	100	98.235	Aotus_nancymaae
ENSRNOG00000009218	Prdm12	99	77.929	ENSACLG00000011876	prdm12b	92	82.143	Astatotilapia_calliptera
ENSRNOG00000009218	Prdm12	99	74.112	ENSACLG00000007631	-	87	81.871	Astatotilapia_calliptera
ENSRNOG00000009218	Prdm12	99	78.571	ENSAMXG00000008540	PRDM12	90	84.356	Astyanax_mexicanus
ENSRNOG00000009218	Prdm12	99	82.973	ENSAMXG00000033665	prdm12b	90	88.323	Astyanax_mexicanus
ENSRNOG00000009218	Prdm12	100	98.082	ENSBTAG00000023797	PRDM12	100	98.082	Bos_taurus
ENSRNOG00000009218	Prdm12	100	96.986	ENSCJAG00000020540	PRDM12	100	96.986	Callithrix_jacchus
ENSRNOG00000009218	Prdm12	88	97.516	ENSCAFG00000023076	PRDM12	99	97.516	Canis_familiaris
ENSRNOG00000009218	Prdm12	100	98.630	ENSCAFG00020024046	PRDM12	100	98.630	Canis_lupus_dingo
ENSRNOG00000009218	Prdm12	100	98.082	ENSCHIG00000025005	PRDM12	100	98.082	Capra_hircus
ENSRNOG00000009218	Prdm12	93	92.647	ENSCPOG00000005901	PRDM12	95	98.403	Cavia_porcellus
ENSRNOG00000009218	Prdm12	100	97.808	ENSCCAG00000037485	PRDM12	100	97.808	Cebus_capucinus
ENSRNOG00000009218	Prdm12	100	97.808	ENSCATG00000020327	PRDM12	100	97.808	Cercocebus_atys
ENSRNOG00000009218	Prdm12	100	91.233	ENSCLAG00000005499	PRDM12	92	97.904	Chinchilla_lanigera
ENSRNOG00000009218	Prdm12	100	98.082	ENSCSAG00000014756	PRDM12	100	98.082	Chlorocebus_sabaeus
ENSRNOG00000009218	Prdm12	100	88.493	ENSCPBG00000022628	PRDM12	94	92.515	Chrysemys_picta_bellii
ENSRNOG00000009218	Prdm12	100	99.454	ENSCGRG00001015005	Prdm12	100	99.454	Cricetulus_griseus_chok1gshd
ENSRNOG00000009218	Prdm12	99	77.273	ENSCVAG00000017166	prdm12b	92	82.405	Cyprinodon_variegatus
ENSRNOG00000009218	Prdm12	99	72.821	ENSCVAG00000000944	-	90	77.778	Cyprinodon_variegatus
ENSRNOG00000009218	Prdm12	99	82.038	ENSDARG00000007430	prdm12b	93	86.257	Danio_rerio
ENSRNOG00000009218	Prdm12	99	97.534	ENSDNOG00000042302	PRDM12	99	97.534	Dasypus_novemcinctus
ENSRNOG00000009218	Prdm12	88	62.393	ENSEBUG00000016780	prdm12b	78	63.818	Eptatretus_burgeri
ENSRNOG00000009218	Prdm12	100	97.534	ENSEASG00005008472	PRDM12	100	97.534	Equus_asinus_asinus
ENSRNOG00000009218	Prdm12	100	97.808	ENSECAG00000005933	PRDM12	100	97.808	Equus_caballus
ENSRNOG00000009218	Prdm12	99	80.423	ENSELUG00000009905	prdm12b	91	86.310	Esox_lucius
ENSRNOG00000009218	Prdm12	99	76.648	ENSELUG00000013674	PRDM12	90	82.875	Esox_lucius
ENSRNOG00000009218	Prdm12	100	98.356	ENSFCAG00000043086	PRDM12	100	98.356	Felis_catus
ENSRNOG00000009218	Prdm12	100	88.767	ENSFALG00000001445	PRDM12	84	92.814	Ficedula_albicollis
ENSRNOG00000009218	Prdm12	99	73.846	ENSFHEG00000007746	-	89	79.592	Fundulus_heteroclitus
ENSRNOG00000009218	Prdm12	99	76.393	ENSFHEG00000003944	prdm12b	92	81.395	Fundulus_heteroclitus
ENSRNOG00000009218	Prdm12	91	81.982	ENSGMOG00000011797	prdm12b	94	81.982	Gadus_morhua
ENSRNOG00000009218	Prdm12	100	88.767	ENSGALG00000003895	PRDM12	94	92.814	Gallus_gallus
ENSRNOG00000009218	Prdm12	100	78.400	ENSGAFG00000010827	prdm12b	90	82.301	Gambusia_affinis
ENSRNOG00000009218	Prdm12	100	78.191	ENSGACG00000016713	prdm12b	91	83.728	Gasterosteus_aculeatus
ENSRNOG00000009218	Prdm12	100	88.767	ENSGAGG00000014083	PRDM12	94	92.814	Gopherus_agassizii
ENSRNOG00000009218	Prdm12	100	98.087	ENSGGOG00000010568	PRDM12	100	98.087	Gorilla_gorilla
ENSRNOG00000009218	Prdm12	99	76.455	ENSHBUG00000022878	prdm12b	93	80.403	Haplochromis_burtoni
ENSRNOG00000009218	Prdm12	99	74.112	ENSHBUG00000022537	-	80	81.871	Haplochromis_burtoni
ENSRNOG00000009218	Prdm12	100	97.260	ENSHGLG00000013939	PRDM12	100	97.260	Heterocephalus_glaber_female
ENSRNOG00000009218	Prdm12	99	73.046	ENSHCOG00000021167	-	95	76.471	Hippocampus_comes
ENSRNOG00000009218	Prdm12	89	80.994	ENSHCOG00000003663	prdm12b	89	79.370	Hippocampus_comes
ENSRNOG00000009218	Prdm12	99	75.543	ENSIPUG00000019544	PRDM12	90	82.012	Ictalurus_punctatus
ENSRNOG00000009218	Prdm12	99	81.551	ENSIPUG00000017053	prdm12b	90	87.651	Ictalurus_punctatus
ENSRNOG00000009218	Prdm12	99	94.751	ENSSTOG00000005986	PRDM12	87	99.401	Ictidomys_tridecemlineatus
ENSRNOG00000009218	Prdm12	90	99.091	ENSJJAG00000005424	Prdm12	100	99.091	Jaculus_jaculus
ENSRNOG00000009218	Prdm12	99	75.477	ENSKMAG00000021205	-	92	81.651	Kryptolebias_marmoratus
ENSRNOG00000009218	Prdm12	89	78.470	ENSKMAG00000016921	prdm12b	87	78.754	Kryptolebias_marmoratus
ENSRNOG00000009218	Prdm12	99	76.984	ENSLBEG00000017769	prdm12b	88	84.132	Labrus_bergylta
ENSRNOG00000009218	Prdm12	99	74.870	ENSLBEG00000007776	-	89	81.602	Labrus_bergylta
ENSRNOG00000009218	Prdm12	99	86.264	ENSLACG00000017560	PRDM12	94	90.090	Latimeria_chalumnae
ENSRNOG00000009218	Prdm12	99	81.622	ENSLOCG00000005429	prdm12b	93	86.726	Lepisosteus_oculatus
ENSRNOG00000009218	Prdm12	92	97.059	ENSLAFG00000006979	PRDM12	91	97.059	Loxodonta_africana
ENSRNOG00000009218	Prdm12	100	93.188	ENSMFAG00000040322	PRDM12	91	98.204	Macaca_fascicularis
ENSRNOG00000009218	Prdm12	100	97.808	ENSMNEG00000037234	PRDM12	100	97.808	Macaca_nemestrina
ENSRNOG00000009218	Prdm12	99	75.781	ENSMAMG00000013212	prdm12b	90	83.383	Mastacembelus_armatus
ENSRNOG00000009218	Prdm12	89	81.250	ENSMAMG00000018988	-	86	81.548	Mastacembelus_armatus
ENSRNOG00000009218	Prdm12	99	73.737	ENSMZEG00005000415	PRDM12	86	81.871	Maylandia_zebra
ENSRNOG00000009218	Prdm12	93	92.669	ENSMGAG00000005438	PRDM12	94	92.814	Meleagris_gallopavo
ENSRNOG00000009218	Prdm12	100	97.808	ENSMAUG00000013040	Prdm12	100	97.808	Mesocricetus_auratus
ENSRNOG00000009218	Prdm12	100	96.986	ENSMICG00000015480	PRDM12	100	96.986	Microcebus_murinus
ENSRNOG00000009218	Prdm12	98	96.348	ENSMOCG00000021026	Prdm12	93	99.415	Microtus_ochrogaster
ENSRNOG00000009218	Prdm12	100	90.685	ENSMODG00000012108	PRDM12	94	94.910	Monodelphis_domestica
ENSRNOG00000009218	Prdm12	99	66.133	ENSMALG00000021901	prdm12b	88	71.171	Monopterus_albus
ENSRNOG00000009218	Prdm12	100	100.000	MGP_CAROLIEiJ_G0023414	Prdm12	100	100.000	Mus_caroli
ENSRNOG00000009218	Prdm12	100	100.000	ENSMUSG00000079466	Prdm12	100	100.000	Mus_musculus
ENSRNOG00000009218	Prdm12	100	100.000	MGP_PahariEiJ_G0024871	Prdm12	100	100.000	Mus_pahari
ENSRNOG00000009218	Prdm12	100	100.000	MGP_SPRETEiJ_G0024331	Prdm12	100	100.000	Mus_spretus
ENSRNOG00000009218	Prdm12	100	95.068	ENSNGAG00000018480	Prdm12	100	95.068	Nannospalax_galili
ENSRNOG00000009218	Prdm12	99	75.328	ENSNBRG00000006727	prdm12b	93	79.714	Neolamprologus_brichardi
ENSRNOG00000009218	Prdm12	99	72.267	ENSNBRG00000024312	-	95	76.608	Neolamprologus_brichardi
ENSRNOG00000009218	Prdm12	100	80.548	ENSMEUG00000003828	PRDM12	94	83.832	Notamacropus_eugenii
ENSRNOG00000009218	Prdm12	90	97.576	ENSOPRG00000008680	PRDM12	100	97.576	Ochotona_princeps
ENSRNOG00000009218	Prdm12	94	98.251	ENSODEG00000016282	PRDM12	64	98.251	Octodon_degus
ENSRNOG00000009218	Prdm12	62	88.596	ENSOANG00000001043	PRDM12	91	95.939	Ornithorhynchus_anatinus
ENSRNOG00000009218	Prdm12	86	92.971	ENSOCUG00000008241	PRDM12	98	94.098	Oryctolagus_cuniculus
ENSRNOG00000009218	Prdm12	99	72.821	ENSORLG00000017558	-	87	80.352	Oryzias_latipes
ENSRNOG00000009218	Prdm12	100	76.240	ENSORLG00000007114	prdm12b	92	81.556	Oryzias_latipes
ENSRNOG00000009218	Prdm12	99	72.634	ENSORLG00020013167	-	87	80.117	Oryzias_latipes_hni
ENSRNOG00000009218	Prdm12	100	75.654	ENSORLG00020019565	prdm12b	91	81.268	Oryzias_latipes_hni
ENSRNOG00000009218	Prdm12	99	72.821	ENSORLG00015003435	-	87	80.352	Oryzias_latipes_hsok
ENSRNOG00000009218	Prdm12	100	75.654	ENSORLG00015007621	prdm12b	92	81.322	Oryzias_latipes_hsok
ENSRNOG00000009218	Prdm12	99	73.643	ENSOMEG00000007762	-	94	78.632	Oryzias_melastigma
ENSRNOG00000009218	Prdm12	100	75.584	ENSOMEG00000004134	prdm12b	91	80.571	Oryzias_melastigma
ENSRNOG00000009218	Prdm12	91	98.799	ENSOGAG00000007557	PRDM12	100	98.799	Otolemur_garnettii
ENSRNOG00000009218	Prdm12	79	97.561	ENSPPAG00000031506	-	99	95.904	Pan_paniscus
ENSRNOG00000009218	Prdm12	100	86.066	ENSPPRG00000023024	PRDM12	86	89.851	Panthera_pardus
ENSRNOG00000009218	Prdm12	100	98.361	ENSPTRG00000043324	-	100	98.361	Pan_troglodytes
ENSRNOG00000009218	Prdm12	100	98.361	ENSPTRG00000021475	PRDM12	100	98.361	Pan_troglodytes
ENSRNOG00000009218	Prdm12	100	97.808	ENSPANG00000025967	PRDM12	100	97.808	Papio_anubis
ENSRNOG00000009218	Prdm12	93	78.632	ENSPKIG00000004305	PRDM12	94	80.539	Paramormyrops_kingsleyae
ENSRNOG00000009218	Prdm12	99	80.475	ENSPKIG00000007228	prdm12b	94	85.057	Paramormyrops_kingsleyae
ENSRNOG00000009218	Prdm12	100	88.493	ENSPSIG00000006739	PRDM12	94	92.515	Pelodiscus_sinensis
ENSRNOG00000009218	Prdm12	100	76.903	ENSPMGG00000008867	prdm12b	92	82.799	Periophthalmus_magnuspinnatus
ENSRNOG00000009218	Prdm12	99	72.846	ENSPMGG00000002356	-	88	80.655	Periophthalmus_magnuspinnatus
ENSRNOG00000009218	Prdm12	95	96.542	ENSPEMG00000009969	Prdm12	91	99.699	Peromyscus_maniculatus_bairdii
ENSRNOG00000009218	Prdm12	100	90.959	ENSPCIG00000024119	PRDM12	94	95.210	Phascolarctos_cinereus
ENSRNOG00000009218	Prdm12	99	77.926	ENSPFOG00000019841	prdm12b	93	81.924	Poecilia_formosa
ENSRNOG00000009218	Prdm12	90	83.036	ENSPLAG00000016626	prdm12b	90	82.596	Poecilia_latipinna
ENSRNOG00000009218	Prdm12	97	76.630	ENSPMEG00000016698	prdm12b	89	82.067	Poecilia_mexicana
ENSRNOG00000009218	Prdm12	96	73.278	ENSPREG00000003211	-	90	77.982	Poecilia_reticulata
ENSRNOG00000009218	Prdm12	100	76.963	ENSPREG00000015073	prdm12b	89	82.456	Poecilia_reticulata
ENSRNOG00000009218	Prdm12	96	96.011	ENSPPYG00000019694	PRDM12	95	97.605	Pongo_abelii
ENSRNOG00000009218	Prdm12	100	98.361	ENSPCOG00000022255	PRDM12	100	98.361	Propithecus_coquereli
ENSRNOG00000009218	Prdm12	100	97.541	ENSPVAG00000001511	PRDM12	100	97.541	Pteropus_vampyrus
ENSRNOG00000009218	Prdm12	99	73.737	ENSPNYG00000013589	-	86	81.871	Pundamilia_nyererei
ENSRNOG00000009218	Prdm12	99	75.789	ENSPNYG00000009607	prdm12b	93	79.656	Pundamilia_nyererei
ENSRNOG00000009218	Prdm12	99	75.000	ENSPNAG00000013396	PRDM12	88	80.547	Pygocentrus_nattereri
ENSRNOG00000009218	Prdm12	99	82.306	ENSPNAG00000024532	prdm12b	91	88.623	Pygocentrus_nattereri
ENSRNOG00000009218	Prdm12	87	98.423	ENSRBIG00000042712	PRDM12	88	97.508	Rhinopithecus_bieti
ENSRNOG00000009218	Prdm12	88	98.442	ENSRROG00000043554	PRDM12	100	98.442	Rhinopithecus_roxellana
ENSRNOG00000009218	Prdm12	100	90.710	ENSSHAG00000015972	PRDM12	94	94.925	Sarcophilus_harrisii
ENSRNOG00000009218	Prdm12	99	74.293	ENSSMAG00000003754	prdm12b	90	80.627	Scophthalmus_maximus
ENSRNOG00000009218	Prdm12	93	81.395	ENSSDUG00000019071	-	92	82.883	Seriola_dumerili
ENSRNOG00000009218	Prdm12	99	75.258	ENSSDUG00000023498	prdm12b	90	81.214	Seriola_dumerili
ENSRNOG00000009218	Prdm12	99	75.844	ENSSLDG00000009557	prdm12b	90	82.216	Seriola_lalandi_dorsalis
ENSRNOG00000009218	Prdm12	99	77.596	ENSSLDG00000013562	-	93	84.356	Seriola_lalandi_dorsalis
ENSRNOG00000009218	Prdm12	100	88.493	ENSSPUG00000013424	PRDM12	94	92.515	Sphenodon_punctatus
ENSRNOG00000009218	Prdm12	99	75.916	ENSSPAG00000018824	prdm12b	90	81.871	Stegastes_partitus
ENSRNOG00000009218	Prdm12	99	66.321	ENSSPAG00000022420	-	87	74.769	Stegastes_partitus
ENSRNOG00000009218	Prdm12	100	98.630	ENSSSCG00000005703	PRDM12	100	98.630	Sus_scrofa
ENSRNOG00000009218	Prdm12	99	77.045	ENSTRUG00000018659	prdm12b	92	82.405	Takifugu_rubripes
ENSRNOG00000009218	Prdm12	99	75.000	ENSTRUG00000013239	-	93	81.325	Takifugu_rubripes
ENSRNOG00000009218	Prdm12	99	75.610	ENSTNIG00000005859	-	92	81.155	Tetraodon_nigroviridis
ENSRNOG00000009218	Prdm12	99	77.368	ENSTNIG00000009020	prdm12b	89	84.685	Tetraodon_nigroviridis
ENSRNOG00000009218	Prdm12	96	97.994	ENSUAMG00000009653	PRDM12	97	97.994	Ursus_americanus
ENSRNOG00000009218	Prdm12	91	98.795	ENSVVUG00000027662	PRDM12	79	98.795	Vulpes_vulpes
ENSRNOG00000009218	Prdm12	100	77.748	ENSXCOG00000002836	prdm12b	91	82.596	Xiphophorus_couchianus
ENSRNOG00000009218	Prdm12	99	74.479	ENSXMAG00000028012	-	88	80.294	Xiphophorus_maculatus
ENSRNOG00000009218	Prdm12	89	83.234	ENSXMAG00000005537	prdm12b	91	82.111	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0019233	sensory perception of pain	-	ISO	Process
GO:0022008	neurogenesis	21873635.	IBA	Process
GO:0022008	neurogenesis	-	ISO	Process
GO:0031175	neuron projection development	-	IEA	Process
GO:0031175	neuron projection development	-	ISO	Process
GO:0031490	chromatin DNA binding	21873635.	IBA	Function
GO:0032259	methylation	-	IEA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0050965	detection of temperature stimulus involved in sensory perception of pain	-	IEA	Process
GO:0050965	detection of temperature stimulus involved in sensory perception of pain	-	ISO	Process
GO:0051574	positive regulation of histone H3-K9 methylation	21873635.	IBA	Process
GO:0051574	positive regulation of histone H3-K9 methylation	-	ISO	Process
GO:1900111	positive regulation of histone H3-K9 dimethylation	21873635.	IBA	Process
GO:1900111	positive regulation of histone H3-K9 dimethylation	-	ISO	Process
GO:1990226	histone methyltransferase binding	21873635.	IBA	Function
GO:1990226	histone methyltransferase binding	-	ISO	Function