EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000009451 (Gene tree)
Gene ID
298374
Gene Symbol
Prpf38a
Alias
LOC298374|RGD1311129
Full Name
pre-mRNA processing factor 38A
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
11698 bases
Position
chr5:128174835-128186532
Accession
1311129
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000012635PRP38PF03371.157.5e-6311
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000012635-1656-ENSRNOP00000012635312 (aa)-D3ZGL5
Gene Model
Click here to download ENSRNOG00000009451's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009451's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000009451Prpf38a10099.359ENSG00000134748PRPF38A10099.359Homo_sapiens
ENSRNOG00000009451Prpf38a7189.140ENSAPOG00000011652prpf38a10082.109Acanthochromis_polyacanthus
ENSRNOG00000009451Prpf38a10099.359ENSAMEG00000009319PRPF38A10099.359Ailuropoda_melanoleuca
ENSRNOG00000009451Prpf38a7186.878ENSACIG00000012292prpf38a7686.147Amphilophus_citrinellus
ENSRNOG00000009451Prpf38a7189.140ENSAOCG00000018004prpf38a10082.109Amphiprion_ocellaris
ENSRNOG00000009451Prpf38a7189.140ENSAPEG00000021414prpf38a10082.109Amphiprion_percula
ENSRNOG00000009451Prpf38a7189.593ENSATEG00000004608prpf38a10082.109Anabas_testudineus
ENSRNOG00000009451Prpf38a7997.976ENSAPLG00000005827PRPF38A9997.976Anas_platyrhynchos
ENSRNOG00000009451Prpf38a10095.192ENSACAG00000008249PRPF38A10095.192Anolis_carolinensis
ENSRNOG00000009451Prpf38a10099.359ENSANAG00000027839PRPF38A10099.359Aotus_nancymaae
ENSRNOG00000009451Prpf38a10068.354ENSANAG00000029204-10062.975Aotus_nancymaae
ENSRNOG00000009451Prpf38a7186.878ENSACLG00000021595prpf38a10080.511Astatotilapia_calliptera
ENSRNOG00000009451Prpf38a10082.748ENSAMXG00000029274prpf38a10082.748Astyanax_mexicanus
ENSRNOG00000009451Prpf38a10099.359ENSBTAG00000002720PRPF38A10099.359Bos_taurus
ENSRNOG00000009451Prpf38a6362.051WBGene00008380prp-386761.111Caenorhabditis_elegans
ENSRNOG00000009451Prpf38a10099.359ENSCJAG00000021594PRPF38A10099.359Callithrix_jacchus
ENSRNOG00000009451Prpf38a10099.359ENSCAFG00000003740PRPF38A10099.359Canis_familiaris
ENSRNOG00000009451Prpf38a10099.359ENSCAFG00020010939PRPF38A10099.359Canis_lupus_dingo
ENSRNOG00000009451Prpf38a10099.359ENSCHIG00000024730PRPF38A10099.359Capra_hircus
ENSRNOG00000009451Prpf38a8698.141ENSTSYG00000031994-9598.141Carlito_syrichta
ENSRNOG00000009451Prpf38a10099.359ENSTSYG00000009868-10099.359Carlito_syrichta
ENSRNOG00000009451Prpf38a10099.359ENSCPOG00000005079PRPF38A10099.359Cavia_porcellus
ENSRNOG00000009451Prpf38a10099.038ENSCCAG00000026502PRPF38A10099.038Cebus_capucinus
ENSRNOG00000009451Prpf38a10099.359ENSCATG00000032296PRPF38A10099.359Cercocebus_atys
ENSRNOG00000009451Prpf38a10064.103ENSCATG00000044190-10062.821Cercocebus_atys
ENSRNOG00000009451Prpf38a10099.359ENSCLAG00000005816PRPF38A10099.359Chinchilla_lanigera
ENSRNOG00000009451Prpf38a7896.875ENSCHOG00000008388PRPF38A7796.875Choloepus_hoffmanni
ENSRNOG00000009451Prpf38a10098.077ENSCPBG00000014791PRPF38A10098.077Chrysemys_picta_bellii
ENSRNOG00000009451Prpf38a6771.905ENSCSAVG00000009580-7866.102Ciona_savignyi
ENSRNOG00000009451Prpf38a9699.331ENSCANG00000032608PRPF38A10099.331Colobus_angolensis_palliatus
ENSRNOG00000009451Prpf38a7484.848ENSCGRG00001002557-7884.848Cricetulus_griseus_chok1gshd
ENSRNOG00000009451Prpf38a10099.679ENSCGRG00001018502-10099.679Cricetulus_griseus_chok1gshd
ENSRNOG00000009451Prpf38a10099.679ENSCGRG00000014868Prpf38a10099.679Cricetulus_griseus_crigri
ENSRNOG00000009451Prpf38a7188.235ENSCSEG00000001269prpf38a7987.446Cynoglossus_semilaevis
ENSRNOG00000009451Prpf38a7190.950ENSCVAG00000012305prpf38a10082.748Cyprinodon_variegatus
ENSRNOG00000009451Prpf38a10082.109ENSDARG00000039213prpf38a10082.109Danio_rerio
ENSRNOG00000009451Prpf38a10099.359ENSDNOG00000042326PRPF38A10099.359Dasypus_novemcinctus
ENSRNOG00000009451Prpf38a10085.897ENSDORG00000023857-10085.897Dipodomys_ordii
ENSRNOG00000009451Prpf38a8483.270ENSDORG00000025371-7887.665Dipodomys_ordii
ENSRNOG00000009451Prpf38a8483.270ENSDORG00000023691-7887.665Dipodomys_ordii
ENSRNOG00000009451Prpf38a6375.127FBgn0050342Prp385776.064Drosophila_melanogaster
ENSRNOG00000009451Prpf38a7681.513ENSEBUG00000012588prpf38a7581.545Eptatretus_burgeri
ENSRNOG00000009451Prpf38a10099.359ENSEASG00005014427PRPF38A10099.359Equus_asinus_asinus
ENSRNOG00000009451Prpf38a10099.359ENSECAG00000022628PRPF38A10099.359Equus_caballus
ENSRNOG00000009451Prpf38a7187.330ENSELUG00000021094prpf38a10080.831Esox_lucius
ENSRNOG00000009451Prpf38a10099.359ENSFCAG00000002518PRPF38A10099.359Felis_catus
ENSRNOG00000009451Prpf38a8797.048ENSFALG00000005598-10097.048Ficedula_albicollis
ENSRNOG00000009451Prpf38a9985.209ENSFALG00000003612-7790.476Ficedula_albicollis
ENSRNOG00000009451Prpf38a10099.038ENSFDAG00000011287PRPF38A10099.038Fukomys_damarensis
ENSRNOG00000009451Prpf38a8479.167ENSFHEG00000014317prpf38a7889.177Fundulus_heteroclitus
ENSRNOG00000009451Prpf38a5395.181ENSGMOG00000011384prpf38a5495.181Gadus_morhua
ENSRNOG00000009451Prpf38a10098.397ENSGALG00000010627PRPF38A10098.397Gallus_gallus
ENSRNOG00000009451Prpf38a7190.950ENSGAFG00000012422prpf38a10082.748Gambusia_affinis
ENSRNOG00000009451Prpf38a7186.547ENSGACG00000005423prpf38a10080.000Gasterosteus_aculeatus
ENSRNOG00000009451Prpf38a10098.397ENSGAGG00000020547PRPF38A10098.397Gopherus_agassizii
ENSRNOG00000009451Prpf38a10099.359ENSGGOG00000003940PRPF38A10099.359Gorilla_gorilla
ENSRNOG00000009451Prpf38a6191.534ENSHBUG00000020572prpf38a8091.489Haplochromis_burtoni
ENSRNOG00000009451Prpf38a10099.359ENSHGLG00000000475PRPF38A10099.359Heterocephalus_glaber_female
ENSRNOG00000009451Prpf38a10083.333ENSHGLG00000007918-10083.013Heterocephalus_glaber_female
ENSRNOG00000009451Prpf38a10083.333ENSHGLG00100003928-10083.013Heterocephalus_glaber_male
ENSRNOG00000009451Prpf38a10099.359ENSHGLG00100008935PRPF38A10099.359Heterocephalus_glaber_male
ENSRNOG00000009451Prpf38a8769.742ENSHCOG00000020781prpf38a5991.489Hippocampus_comes
ENSRNOG00000009451Prpf38a7487.931ENSIPUG00000005757prpf38a7587.931Ictalurus_punctatus
ENSRNOG00000009451Prpf38a10099.359ENSSTOG00000015610PRPF38A10099.359Ictidomys_tridecemlineatus
ENSRNOG00000009451Prpf38a10098.718ENSJJAG00000015811Prpf38a10098.718Jaculus_jaculus
ENSRNOG00000009451Prpf38a7190.498ENSKMAG00000006588prpf38a10082.428Kryptolebias_marmoratus
ENSRNOG00000009451Prpf38a9679.530ENSLBEG00000020585prpf38a10079.872Labrus_bergylta
ENSRNOG00000009451Prpf38a10092.628ENSLACG00000011495PRPF38A10092.628Latimeria_chalumnae
ENSRNOG00000009451Prpf38a10080.511ENSLOCG00000006262prpf38a10081.789Lepisosteus_oculatus
ENSRNOG00000009451Prpf38a10099.359ENSLAFG00000025862PRPF38A10099.359Loxodonta_africana
ENSRNOG00000009451Prpf38a10099.359ENSMFAG00000039449PRPF38A10099.359Macaca_fascicularis
ENSRNOG00000009451Prpf38a8798.529ENSMMUG00000014333PRPF38A9898.529Macaca_mulatta
ENSRNOG00000009451Prpf38a10064.423ENSMNEG00000040242-10063.462Macaca_nemestrina
ENSRNOG00000009451Prpf38a10099.359ENSMNEG00000031221PRPF38A10099.359Macaca_nemestrina
ENSRNOG00000009451Prpf38a10099.359ENSMLEG00000041105PRPF38A10099.359Mandrillus_leucophaeus
ENSRNOG00000009451Prpf38a7188.688ENSMAMG00000015431prpf38a10081.789Mastacembelus_armatus
ENSRNOG00000009451Prpf38a7186.878ENSMZEG00005017838prpf38a10080.511Maylandia_zebra
ENSRNOG00000009451Prpf38a9698.328ENSMGAG00000011176PRPF38A10098.328Meleagris_gallopavo
ENSRNOG00000009451Prpf38a8594.697ENSMAUG00000018029-8794.805Mesocricetus_auratus
ENSRNOG00000009451Prpf38a10099.359ENSMICG00000014193PRPF38A10099.359Microcebus_murinus
ENSRNOG00000009451Prpf38a10099.679ENSMOCG00000013080Prpf38a10099.679Microtus_ochrogaster
ENSRNOG00000009451Prpf38a8382.171ENSMMOG00000016972prpf38a8187.879Mola_mola
ENSRNOG00000009451Prpf38a10097.764ENSMODG00000000644PRPF38A10097.764Monodelphis_domestica
ENSRNOG00000009451Prpf38a7188.688ENSMALG00000019363prpf38a9781.789Monopterus_albus
ENSRNOG00000009451Prpf38a10099.359MGP_CAROLIEiJ_G0026269Prpf38a10099.359Mus_caroli
ENSRNOG00000009451Prpf38a10099.359ENSMUSG00000063800Prpf38a10099.359Mus_musculus
ENSRNOG00000009451Prpf38a10099.359MGP_PahariEiJ_G0028602Prpf38a10099.359Mus_pahari
ENSRNOG00000009451Prpf38a10099.038MGP_SPRETEiJ_G0027238Prpf38a10099.038Mus_spretus
ENSRNOG00000009451Prpf38a10099.359ENSMPUG00000006896PRPF38A10099.359Mustela_putorius_furo
ENSRNOG00000009451Prpf38a10099.679ENSNGAG00000011884Prpf38a10099.679Nannospalax_galili
ENSRNOG00000009451Prpf38a7185.520ENSNBRG00000004013prpf38a7484.848Neolamprologus_brichardi
ENSRNOG00000009451Prpf38a9773.179ENSNLEG00000012592-9973.179Nomascus_leucogenys
ENSRNOG00000009451Prpf38a10066.987ENSNLEG00000033398-9466.987Nomascus_leucogenys
ENSRNOG00000009451Prpf38a9399.308ENSNLEG00000017999PRPF38A9399.308Nomascus_leucogenys
ENSRNOG00000009451Prpf38a10094.872ENSMEUG00000003860PRPF38A10094.872Notamacropus_eugenii
ENSRNOG00000009451Prpf38a7799.583ENSOPRG00000008985PRPF38A10099.583Ochotona_princeps
ENSRNOG00000009451Prpf38a10099.359ENSODEG00000005869PRPF38A10099.359Octodon_degus
ENSRNOG00000009451Prpf38a7187.330ENSONIG00000007816prpf38a10080.831Oreochromis_niloticus
ENSRNOG00000009451Prpf38a10064.968ENSOANG00000009541-10064.968Ornithorhynchus_anatinus
ENSRNOG00000009451Prpf38a10099.359ENSOCUG00000000963PRPF38A10099.359Oryctolagus_cuniculus
ENSRNOG00000009451Prpf38a9682.667ENSORLG00000013485prpf38a9982.692Oryzias_latipes
ENSRNOG00000009451Prpf38a9682.667ENSORLG00020002130prpf38a9982.692Oryzias_latipes_hni
ENSRNOG00000009451Prpf38a9682.333ENSORLG00015021393prpf38a9982.372Oryzias_latipes_hsok
ENSRNOG00000009451Prpf38a9682.215ENSOMEG00000016333prpf38a10082.109Oryzias_melastigma
ENSRNOG00000009451Prpf38a10099.359ENSOGAG00000005423PRPF38A10099.359Otolemur_garnettii
ENSRNOG00000009451Prpf38a10099.359ENSOARG00000005373PRPF38A10099.359Ovis_aries
ENSRNOG00000009451Prpf38a10077.244ENSPPAG00000033867-10077.244Pan_paniscus
ENSRNOG00000009451Prpf38a10099.359ENSPPAG00000030905PRPF38A10099.359Pan_paniscus
ENSRNOG00000009451Prpf38a10099.359ENSPPRG00000013268PRPF38A10099.359Panthera_pardus
ENSRNOG00000009451Prpf38a10099.359ENSPTIG00000015419PRPF38A10099.359Panthera_tigris_altaica
ENSRNOG00000009451Prpf38a10099.359ENSPTRG00000000739PRPF38A10099.359Pan_troglodytes
ENSRNOG00000009451Prpf38a10099.359ENSPANG00000015483PRPF38A10099.359Papio_anubis
ENSRNOG00000009451Prpf38a10079.167ENSPKIG00000011439prpf38a10080.449Paramormyrops_kingsleyae
ENSRNOG00000009451Prpf38a10097.756ENSPSIG00000017487PRPF38A10097.756Pelodiscus_sinensis
ENSRNOG00000009451Prpf38a7089.862ENSPMGG00000021352prpf38a9978.964Periophthalmus_magnuspinnatus
ENSRNOG00000009451Prpf38a10099.679ENSPEMG00000023277-10099.679Peromyscus_maniculatus_bairdii
ENSRNOG00000009451Prpf38a10093.651ENSPEMG00000011212-10093.651Peromyscus_maniculatus_bairdii
ENSRNOG00000009451Prpf38a10097.444ENSPCIG00000022369-10097.444Phascolarctos_cinereus
ENSRNOG00000009451Prpf38a8381.853ENSPFOG00000004248prpf38a10082.748Poecilia_formosa
ENSRNOG00000009451Prpf38a9277.397ENSPLAG00000010328prpf38a10082.748Poecilia_latipinna
ENSRNOG00000009451Prpf38a8479.699ENSPMEG00000011804prpf38a10082.748Poecilia_mexicana
ENSRNOG00000009451Prpf38a9574.000ENSPREG00000002835prpf38a5894.681Poecilia_reticulata
ENSRNOG00000009451Prpf38a10090.852ENSPPYG00000001348PRPF38A10090.852Pongo_abelii
ENSRNOG00000009451Prpf38a10098.718ENSPCAG00000013328PRPF38A10098.718Procavia_capensis
ENSRNOG00000009451Prpf38a10076.282ENSPCOG00000020709-7680.519Propithecus_coquereli
ENSRNOG00000009451Prpf38a10099.359ENSPCOG00000016387-10099.359Propithecus_coquereli
ENSRNOG00000009451Prpf38a10099.359ENSPVAG00000009803PRPF38A10099.359Pteropus_vampyrus
ENSRNOG00000009451Prpf38a7186.878ENSPNYG00000005571prpf38a10080.511Pundamilia_nyererei
ENSRNOG00000009451Prpf38a10082.748ENSPNAG00000010399prpf38a10082.748Pygocentrus_nattereri
ENSRNOG00000009451Prpf38a10099.359ENSRBIG00000036442PRPF38A10099.359Rhinopithecus_bieti
ENSRNOG00000009451Prpf38a10062.179ENSRBIG00000034053-10058.974Rhinopithecus_bieti
ENSRNOG00000009451Prpf38a10099.359ENSRROG00000032788PRPF38A10099.359Rhinopithecus_roxellana
ENSRNOG00000009451Prpf38a9878.431ENSRROG00000040003-9978.431Rhinopithecus_roxellana
ENSRNOG00000009451Prpf38a10099.359ENSSBOG00000019515PRPF38A10099.359Saimiri_boliviensis_boliviensis
ENSRNOG00000009451Prpf38a9670.724ENSSHAG00000006029-7481.448Sarcophilus_harrisii
ENSRNOG00000009451Prpf38a8797.048ENSSHAG00000006906-10097.048Sarcophilus_harrisii
ENSRNOG00000009451Prpf38a10079.233ENSSFOG00015013572prpf38a10079.872Scleropages_formosus
ENSRNOG00000009451Prpf38a7188.235ENSSMAG00000015379prpf38a7587.446Scophthalmus_maximus
ENSRNOG00000009451Prpf38a7189.593ENSSDUG00000001324prpf38a10082.428Seriola_dumerili
ENSRNOG00000009451Prpf38a7189.593ENSSLDG00000014803prpf38a10082.428Seriola_lalandi_dorsalis
ENSRNOG00000009451Prpf38a10082.372ENSSARG00000014458PRPF38A10082.372Sorex_araneus
ENSRNOG00000009451Prpf38a10095.513ENSSPUG00000013259PRPF38A10095.513Sphenodon_punctatus
ENSRNOG00000009451Prpf38a7171.041ENSSPAG00000010449prpf38a10064.423Stegastes_partitus
ENSRNOG00000009451Prpf38a10099.359ENSSSCG00000028288PRPF38A10099.359Sus_scrofa
ENSRNOG00000009451Prpf38a10093.910ENSTGUG00000008995PRPF38A10093.910Taeniopygia_guttata
ENSRNOG00000009451Prpf38a7188.688ENSTRUG00000003374prpf38a7187.879Takifugu_rubripes
ENSRNOG00000009451Prpf38a7186.996ENSTNIG00000005533prpf38a10080.317Tetraodon_nigroviridis
ENSRNOG00000009451Prpf38a10098.718ENSTBEG00000000725PRPF38A10098.718Tupaia_belangeri
ENSRNOG00000009451Prpf38a10099.359ENSTTRG00000016139PRPF38A10099.359Tursiops_truncatus
ENSRNOG00000009451Prpf38a10099.359ENSUAMG00000000625PRPF38A10099.359Ursus_americanus
ENSRNOG00000009451Prpf38a10099.359ENSUMAG00000022674PRPF38A10099.359Ursus_maritimus
ENSRNOG00000009451Prpf38a7498.701ENSVPAG00000000907PRPF38A10093.590Vicugna_pacos
ENSRNOG00000009451Prpf38a10099.359ENSVVUG00000004475PRPF38A10099.359Vulpes_vulpes
ENSRNOG00000009451Prpf38a10084.665ENSXETG00000008060prpf38a10088.498Xenopus_tropicalis
ENSRNOG00000009451Prpf38a7188.789ENSXCOG00000007393prpf38a7787.983Xiphophorus_couchianus
ENSRNOG00000009451Prpf38a7190.950ENSXMAG00000026143prpf38a10082.748Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-IEAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0005634nucleus-ISOComponent
GO:0031965nuclear membrane-IEAComponent
GO:0031965nuclear membrane-ISOComponent
GO:0071005U2-type precatalytic spliceosome-IEAComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071011precatalytic spliceosome21873635.IBAComponent
GO:0071011precatalytic spliceosome-ISOComponent

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