EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009474 (Gene tree)
Gene ID: 303607
Gene Symbol: Ddx42
Alias: LOC303607
Full Name: DEAD-box helicase 42
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 31494 bases
Position: chr10:94407559-94439052
Accession: 1304909
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000013046	ResIII	PF04851.15	6.7e-07	1	1
ENSRNOP00000013046	DEAD	PF00270.29	1.5e-49	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000013046	-	4068	XM_006247596	ENSRNOP00000013046	929 (aa)	XP_006247658	D4A031

Gene Model

Click here to download ENSRNOG00000009474's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009474's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000009474	Ddx42	59	37.993	ENSRNOG00000030680	Ddx5	85	38.517
ENSRNOG00000009474	Ddx42	50	36.066	ENSRNOG00000050868	Ddx43	74	36.066

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009474	Ddx42	100	94.888	ENSG00000198231	DDX42	100	97.115	Homo_sapiens
ENSRNOG00000009474	Ddx42	91	76.561	ENSAPOG00000017675	ddx42	99	71.737	Acanthochromis_polyacanthus
ENSRNOG00000009474	Ddx42	100	95.192	ENSAMEG00000003200	DDX42	100	95.192	Ailuropoda_melanoleuca
ENSRNOG00000009474	Ddx42	74	77.601	ENSACIG00000007376	ddx42	99	72.201	Amphilophus_citrinellus
ENSRNOG00000009474	Ddx42	91	76.706	ENSAOCG00000003520	ddx42	99	72.181	Amphiprion_ocellaris
ENSRNOG00000009474	Ddx42	100	71.748	ENSAPEG00000000984	ddx42	99	72.029	Amphiprion_percula
ENSRNOG00000009474	Ddx42	99	71.204	ENSATEG00000022920	ddx42	99	72.476	Anabas_testudineus
ENSRNOG00000009474	Ddx42	100	83.650	ENSAPLG00000010544	DDX42	100	83.421	Anas_platyrhynchos
ENSRNOG00000009474	Ddx42	100	84.043	ENSACAG00000003994	DDX42	99	84.468	Anolis_carolinensis
ENSRNOG00000009474	Ddx42	100	95.806	ENSANAG00000035693	DDX42	99	97.159	Aotus_nancymaae
ENSRNOG00000009474	Ddx42	89	77.300	ENSACLG00000025113	ddx42	99	72.311	Astatotilapia_calliptera
ENSRNOG00000009474	Ddx42	78	81.199	ENSAMXG00000011435	ddx42	99	69.525	Astyanax_mexicanus
ENSRNOG00000009474	Ddx42	100	94.444	ENSBTAG00000021058	DDX42	100	94.551	Bos_taurus
ENSRNOG00000009474	Ddx42	64	52.987	WBGene00008119	C46F11.4	78	53.208	Caenorhabditis_elegans
ENSRNOG00000009474	Ddx42	100	95.699	ENSCJAG00000019649	DDX42	99	98.042	Callithrix_jacchus
ENSRNOG00000009474	Ddx42	100	94.866	ENSCAFG00000012818	DDX42	100	94.866	Canis_familiaris
ENSRNOG00000009474	Ddx42	100	94.973	ENSCAFG00020026631	DDX42	100	94.973	Canis_lupus_dingo
ENSRNOG00000009474	Ddx42	100	94.569	ENSCHIG00000014431	DDX42	100	94.569	Capra_hircus
ENSRNOG00000009474	Ddx42	100	93.697	ENSTSYG00000001380	DDX42	100	93.697	Carlito_syrichta
ENSRNOG00000009474	Ddx42	73	75.480	ENSCAPG00000013621	DDX42	94	75.480	Cavia_aperea
ENSRNOG00000009474	Ddx42	100	95.381	ENSCPOG00000005633	DDX42	100	95.381	Cavia_porcellus
ENSRNOG00000009474	Ddx42	100	90.430	ENSCCAG00000020612	DDX42	100	94.698	Cebus_capucinus
ENSRNOG00000009474	Ddx42	100	95.484	ENSCATG00000030490	DDX42	100	95.376	Cercocebus_atys
ENSRNOG00000009474	Ddx42	100	96.026	ENSCLAG00000003497	DDX42	100	95.596	Chinchilla_lanigera
ENSRNOG00000009474	Ddx42	100	90.890	ENSCSAG00000003914	DDX42	100	90.890	Chlorocebus_sabaeus
ENSRNOG00000009474	Ddx42	79	94.643	ENSCHOG00000006241	DDX42	79	94.643	Choloepus_hoffmanni
ENSRNOG00000009474	Ddx42	100	84.029	ENSCPBG00000026682	DDX42	100	84.008	Chrysemys_picta_bellii
ENSRNOG00000009474	Ddx42	100	95.484	ENSCANG00000034663	DDX42	99	97.266	Colobus_angolensis_palliatus
ENSRNOG00000009474	Ddx42	100	97.417	ENSCGRG00001009775	Ddx42	100	97.417	Cricetulus_griseus_chok1gshd
ENSRNOG00000009474	Ddx42	100	97.417	ENSCGRG00000011718	Ddx42	100	97.417	Cricetulus_griseus_crigri
ENSRNOG00000009474	Ddx42	91	74.852	ENSCSEG00000021574	ddx42	99	70.544	Cynoglossus_semilaevis
ENSRNOG00000009474	Ddx42	99	70.588	ENSCVAG00000011404	ddx42	99	71.612	Cyprinodon_variegatus
ENSRNOG00000009474	Ddx42	99	69.358	ENSDARG00000037928	ddx42	99	70.903	Danio_rerio
ENSRNOG00000009474	Ddx42	100	88.593	ENSDNOG00000007961	DDX42	100	88.593	Dasypus_novemcinctus
ENSRNOG00000009474	Ddx42	100	87.687	ENSDORG00000004199	Ddx42	100	87.259	Dipodomys_ordii
ENSRNOG00000009474	Ddx42	66	60.514	FBgn0036104	CG6418	84	57.485	Drosophila_melanogaster
ENSRNOG00000009474	Ddx42	80	72.944	ENSEBUG00000001155	ddx42	91	72.944	Eptatretus_burgeri
ENSRNOG00000009474	Ddx42	100	95.722	ENSEASG00005013089	DDX42	99	97.143	Equus_asinus_asinus
ENSRNOG00000009474	Ddx42	100	95.615	ENSECAG00000022684	DDX42	100	95.615	Equus_caballus
ENSRNOG00000009474	Ddx42	67	97.297	ENSEEUG00000009144	DDX42	85	97.297	Erinaceus_europaeus
ENSRNOG00000009474	Ddx42	100	70.825	ENSELUG00000020593	ddx42	100	70.930	Esox_lucius
ENSRNOG00000009474	Ddx42	100	95.508	ENSFCAG00000003499	DDX42	100	95.508	Felis_catus
ENSRNOG00000009474	Ddx42	96	84.246	ENSFALG00000004675	DDX42	78	83.969	Ficedula_albicollis
ENSRNOG00000009474	Ddx42	100	95.601	ENSFDAG00000020516	DDX42	100	95.601	Fukomys_damarensis
ENSRNOG00000009474	Ddx42	99	69.510	ENSFHEG00000023290	ddx42	99	71.002	Fundulus_heteroclitus
ENSRNOG00000009474	Ddx42	76	77.997	ENSGMOG00000004595	ddx42	79	77.997	Gadus_morhua
ENSRNOG00000009474	Ddx42	100	81.921	ENSGALG00000000581	DDX42	100	82.128	Gallus_gallus
ENSRNOG00000009474	Ddx42	90	74.822	ENSGAFG00000011846	ddx42	95	73.791	Gambusia_affinis
ENSRNOG00000009474	Ddx42	99	68.415	ENSGACG00000009782	ddx42	99	67.126	Gasterosteus_aculeatus
ENSRNOG00000009474	Ddx42	100	84.310	ENSGAGG00000024411	DDX42	99	83.663	Gopherus_agassizii
ENSRNOG00000009474	Ddx42	100	95.484	ENSGGOG00000006779	DDX42	100	95.376	Gorilla_gorilla
ENSRNOG00000009474	Ddx42	89	77.539	ENSHBUG00000008705	ddx42	99	72.524	Haplochromis_burtoni
ENSRNOG00000009474	Ddx42	100	91.183	ENSHGLG00000010024	DDX42	100	90.968	Heterocephalus_glaber_female
ENSRNOG00000009474	Ddx42	94	72.790	ENSHGLG00100007138	-	95	72.445	Heterocephalus_glaber_male
ENSRNOG00000009474	Ddx42	100	94.866	ENSHGLG00100004479	-	100	94.866	Heterocephalus_glaber_male
ENSRNOG00000009474	Ddx42	84	77.735	ENSHCOG00000003357	ddx42	92	77.735	Hippocampus_comes
ENSRNOG00000009474	Ddx42	80	79.657	ENSIPUG00000013327	ddx42	100	69.401	Ictalurus_punctatus
ENSRNOG00000009474	Ddx42	100	96.781	ENSSTOG00000008922	DDX42	100	96.781	Ictidomys_tridecemlineatus
ENSRNOG00000009474	Ddx42	100	95.381	ENSJJAG00000011727	Ddx42	100	95.166	Jaculus_jaculus
ENSRNOG00000009474	Ddx42	99	70.117	ENSKMAG00000009914	ddx42	99	72.476	Kryptolebias_marmoratus
ENSRNOG00000009474	Ddx42	81	76.203	ENSLBEG00000004687	ddx42	99	66.318	Labrus_bergylta
ENSRNOG00000009474	Ddx42	99	76.559	ENSLACG00000013476	DDX42	97	77.742	Latimeria_chalumnae
ENSRNOG00000009474	Ddx42	100	75.188	ENSLOCG00000011764	ddx42	100	75.618	Lepisosteus_oculatus
ENSRNOG00000009474	Ddx42	100	95.269	ENSLAFG00000003249	DDX42	100	95.080	Loxodonta_africana
ENSRNOG00000009474	Ddx42	100	95.484	ENSMFAG00000031356	DDX42	100	95.376	Macaca_fascicularis
ENSRNOG00000009474	Ddx42	100	95.289	ENSMMUG00000016762	DDX42	100	95.182	Macaca_mulatta
ENSRNOG00000009474	Ddx42	100	95.484	ENSMNEG00000038250	DDX42	100	95.376	Macaca_nemestrina
ENSRNOG00000009474	Ddx42	100	94.675	ENSMLEG00000043080	DDX42	100	94.675	Mandrillus_leucophaeus
ENSRNOG00000009474	Ddx42	91	77.305	ENSMAMG00000021888	ddx42	98	72.234	Mastacembelus_armatus
ENSRNOG00000009474	Ddx42	89	77.300	ENSMZEG00005023103	ddx42	99	72.311	Maylandia_zebra
ENSRNOG00000009474	Ddx42	100	82.438	ENSMGAG00000001822	DDX42	100	82.438	Meleagris_gallopavo
ENSRNOG00000009474	Ddx42	76	98.295	ENSMAUG00000020774	-	94	98.295	Mesocricetus_auratus
ENSRNOG00000009474	Ddx42	100	96.022	ENSMICG00000009952	DDX42	100	95.806	Microcebus_murinus
ENSRNOG00000009474	Ddx42	100	96.663	ENSMOCG00000015504	Ddx42	100	96.663	Microtus_ochrogaster
ENSRNOG00000009474	Ddx42	89	72.216	ENSMMOG00000016963	ddx42	87	70.273	Mola_mola
ENSRNOG00000009474	Ddx42	50	97.430	ENSMODG00000009917	-	98	97.430	Monodelphis_domestica
ENSRNOG00000009474	Ddx42	99	72.377	ENSMALG00000007800	ddx42	99	73.126	Monopterus_albus
ENSRNOG00000009474	Ddx42	100	98.924	MGP_CAROLIEiJ_G0017314	Ddx42	100	98.924	Mus_caroli
ENSRNOG00000009474	Ddx42	100	98.708	ENSMUSG00000020705	Ddx42	100	98.708	Mus_musculus
ENSRNOG00000009474	Ddx42	79	99.702	MGP_PahariEiJ_G0018444	-	100	99.702	Mus_pahari
ENSRNOG00000009474	Ddx42	100	98.708	MGP_SPRETEiJ_G0018158	Ddx42	100	98.708	Mus_spretus
ENSRNOG00000009474	Ddx42	100	94.899	ENSMPUG00000014921	DDX42	100	94.899	Mustela_putorius_furo
ENSRNOG00000009474	Ddx42	100	93.361	ENSMLUG00000011645	DDX42	100	93.045	Myotis_lucifugus
ENSRNOG00000009474	Ddx42	100	97.100	ENSNGAG00000021897	Ddx42	100	97.100	Nannospalax_galili
ENSRNOG00000009474	Ddx42	89	75.866	ENSNBRG00000004466	ddx42	99	71.033	Neolamprologus_brichardi
ENSRNOG00000009474	Ddx42	100	95.484	ENSNLEG00000004248	DDX42	99	97.270	Nomascus_leucogenys
ENSRNOG00000009474	Ddx42	74	82.272	ENSMEUG00000013227	-	83	82.272	Notamacropus_eugenii
ENSRNOG00000009474	Ddx42	100	94.243	ENSOPRG00000014960	DDX42	100	94.350	Ochotona_princeps
ENSRNOG00000009474	Ddx42	100	92.266	ENSODEG00000007810	DDX42	100	91.837	Octodon_degus
ENSRNOG00000009474	Ddx42	89	77.419	ENSONIG00000000734	ddx42	99	72.311	Oreochromis_niloticus
ENSRNOG00000009474	Ddx42	58	92.208	ENSOANG00000000265	DDX42	100	92.208	Ornithorhynchus_anatinus
ENSRNOG00000009474	Ddx42	95	95.276	ENSOCUG00000004304	DDX42	88	95.163	Oryctolagus_cuniculus
ENSRNOG00000009474	Ddx42	100	70.520	ENSORLG00000002395	ddx42	100	69.468	Oryzias_latipes
ENSRNOG00000009474	Ddx42	100	70.469	ENSORLG00020011621	ddx42	100	71.322	Oryzias_latipes_hni
ENSRNOG00000009474	Ddx42	100	70.594	ENSORLG00015004487	ddx42	100	71.902	Oryzias_latipes_hsok
ENSRNOG00000009474	Ddx42	80	82.157	ENSOMEG00000020093	ddx42	100	71.005	Oryzias_melastigma
ENSRNOG00000009474	Ddx42	100	94.989	ENSOGAG00000006872	DDX42	100	94.989	Otolemur_garnettii
ENSRNOG00000009474	Ddx42	100	93.671	ENSOARG00000013540	DDX42	100	93.987	Ovis_aries
ENSRNOG00000009474	Ddx42	100	95.699	ENSPPAG00000007496	DDX42	100	95.591	Pan_paniscus
ENSRNOG00000009474	Ddx42	100	95.401	ENSPPRG00000002740	DDX42	100	95.401	Panthera_pardus
ENSRNOG00000009474	Ddx42	100	95.294	ENSPTIG00000009932	DDX42	100	95.294	Panthera_tigris_altaica
ENSRNOG00000009474	Ddx42	100	95.699	ENSPTRG00000009523	DDX42	100	95.591	Pan_troglodytes
ENSRNOG00000009474	Ddx42	100	95.376	ENSPANG00000020990	DDX42	100	95.269	Papio_anubis
ENSRNOG00000009474	Ddx42	100	70.557	ENSPKIG00000002901	ddx42	99	69.989	Paramormyrops_kingsleyae
ENSRNOG00000009474	Ddx42	86	91.553	ENSPSIG00000010289	DDX42	98	91.256	Pelodiscus_sinensis
ENSRNOG00000009474	Ddx42	100	67.269	ENSPMGG00000009323	ddx42	100	68.004	Periophthalmus_magnuspinnatus
ENSRNOG00000009474	Ddx42	100	97.527	ENSPEMG00000006755	Ddx42	100	97.527	Peromyscus_maniculatus_bairdii
ENSRNOG00000009474	Ddx42	80	72.005	ENSPMAG00000005580	ddx42	100	72.870	Petromyzon_marinus
ENSRNOG00000009474	Ddx42	100	90.466	ENSPCIG00000009093	DDX42	100	90.254	Phascolarctos_cinereus
ENSRNOG00000009474	Ddx42	99	70.239	ENSPFOG00000014104	ddx42	99	71.354	Poecilia_formosa
ENSRNOG00000009474	Ddx42	99	70.239	ENSPLAG00000010522	ddx42	99	71.354	Poecilia_latipinna
ENSRNOG00000009474	Ddx42	100	70.177	ENSPMEG00000010744	ddx42	99	71.789	Poecilia_mexicana
ENSRNOG00000009474	Ddx42	100	69.358	ENSPREG00000009926	ddx42	99	71.011	Poecilia_reticulata
ENSRNOG00000009474	Ddx42	100	92.683	ENSPPYG00000008531	DDX42	100	92.683	Pongo_abelii
ENSRNOG00000009474	Ddx42	92	88.966	ENSPCAG00000002474	DDX42	100	88.966	Procavia_capensis
ENSRNOG00000009474	Ddx42	100	85.668	ENSPCOG00000001559	DDX42	98	89.102	Propithecus_coquereli
ENSRNOG00000009474	Ddx42	100	91.239	ENSPVAG00000000160	DDX42	100	90.491	Pteropus_vampyrus
ENSRNOG00000009474	Ddx42	74	75.360	ENSPNYG00000013954	ddx42	97	69.724	Pundamilia_nyererei
ENSRNOG00000009474	Ddx42	78	80.926	ENSPNAG00000017352	ddx42	99	69.722	Pygocentrus_nattereri
ENSRNOG00000009474	Ddx42	100	95.376	ENSRBIG00000004781	DDX42	99	97.266	Rhinopithecus_bieti
ENSRNOG00000009474	Ddx42	100	95.484	ENSRROG00000029794	DDX42	100	95.376	Rhinopithecus_roxellana
ENSRNOG00000009474	Ddx42	100	95.806	ENSSBOG00000029624	DDX42	100	95.591	Saimiri_boliviensis_boliviensis
ENSRNOG00000009474	Ddx42	100	90.784	ENSSHAG00000012896	-	100	90.572	Sarcophilus_harrisii
ENSRNOG00000009474	Ddx42	71	60.565	ENSSHAG00000007919	-	99	59.556	Sarcophilus_harrisii
ENSRNOG00000009474	Ddx42	82	80.309	ENSSFOG00015014064	ddx42	83	80.438	Scleropages_formosus
ENSRNOG00000009474	Ddx42	99	71.230	ENSSMAG00000009077	ddx42	99	70.648	Scophthalmus_maximus
ENSRNOG00000009474	Ddx42	99	72.128	ENSSDUG00000022221	ddx42	99	72.505	Seriola_dumerili
ENSRNOG00000009474	Ddx42	99	71.674	ENSSLDG00000018483	ddx42	99	71.734	Seriola_lalandi_dorsalis
ENSRNOG00000009474	Ddx42	100	94.332	ENSSARG00000009847	DDX42	100	94.332	Sorex_araneus
ENSRNOG00000009474	Ddx42	100	84.260	ENSSPUG00000018806	DDX42	100	83.945	Sphenodon_punctatus
ENSRNOG00000009474	Ddx42	91	76.678	ENSSPAG00000013055	ddx42	99	72.399	Stegastes_partitus
ENSRNOG00000009474	Ddx42	85	92.928	ENSSSCG00000017289	DDX42	97	93.300	Sus_scrofa
ENSRNOG00000009474	Ddx42	100	83.106	ENSTGUG00000001931	DDX42	100	83.106	Taeniopygia_guttata
ENSRNOG00000009474	Ddx42	99	70.525	ENSTRUG00000010711	ddx42	99	79.431	Takifugu_rubripes
ENSRNOG00000009474	Ddx42	82	93.026	ENSTBEG00000010159	DDX42	99	93.026	Tupaia_belangeri
ENSRNOG00000009474	Ddx42	100	94.979	ENSTTRG00000006962	DDX42	100	94.551	Tursiops_truncatus
ENSRNOG00000009474	Ddx42	100	95.192	ENSUAMG00000007321	DDX42	100	95.192	Ursus_americanus
ENSRNOG00000009474	Ddx42	100	94.338	ENSUMAG00000017438	DDX42	100	94.338	Ursus_maritimus
ENSRNOG00000009474	Ddx42	100	85.775	ENSVPAG00000009633	DDX42	100	85.775	Vicugna_pacos
ENSRNOG00000009474	Ddx42	100	95.187	ENSVVUG00000006095	DDX42	100	95.187	Vulpes_vulpes
ENSRNOG00000009474	Ddx42	100	76.538	ENSXETG00000003245	ddx42	100	74.716	Xenopus_tropicalis
ENSRNOG00000009474	Ddx42	84	70.722	ENSXCOG00000017560	ddx42	97	71.356	Xiphophorus_couchianus
ENSRNOG00000009474	Ddx42	100	71.337	ENSXMAG00000008138	ddx42	99	72.163	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008104	protein localization	-	IEA	Process
GO:0008104	protein localization	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0042981	regulation of apoptotic process	-	IEA	Process
GO:0042981	regulation of apoptotic process	-	ISO	Process