EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009545 (Gene tree)
Gene ID: 83581
Gene Symbol: Polr1a
Alias: A194|RPA194|Rpa1|Rpo1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 63881 bases
Position: chr4:99823252-99887132
Accession: 620824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000013587	RNA_pol_Rpb1_5	PF04998.17	8.9e-103	1	1
ENSRNOP00000013587	RNA_pol_Rpb1_4	PF05000.17	8e-26	1	1
ENSRNOP00000013587	RNA_pol_Rpb1_2	PF00623.20	4.7e-70	1	1
ENSRNOP00000013587	RNA_pol_Rpb1_3	PF04983.18	1.1e-37	1	1
ENSRNOP00000013587	RNA_pol_Rpb1_1	PF04997.12	1.8e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000013587	-	6014	XM_008762998	ENSRNOP00000013587	1716 (aa)	XP_008761220	G3V7B7

Gene Model

Click here to download ENSRNOG00000009545's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009545's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000009545	Polr1a	62	32.911	ENSRNOG00000010008	Polr3a	69	32.911
ENSRNOG00000009545	Polr1a	69	33.333	ENSRNOG00000028834	Polr2a	58	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009545	Polr1a	100	87.377	ENSG00000068654	POLR1A	100	87.666	Homo_sapiens
ENSRNOG00000009545	Polr1a	69	67.477	ENSAPOG00000017945	polr1a	99	67.477	Acanthochromis_polyacanthus
ENSRNOG00000009545	Polr1a	100	87.986	ENSAMEG00000005807	POLR1A	100	89.959	Ailuropoda_melanoleuca
ENSRNOG00000009545	Polr1a	96	67.911	ENSACIG00000022147	polr1a	100	67.220	Amphilophus_citrinellus
ENSRNOG00000009545	Polr1a	100	65.932	ENSAOCG00000017336	polr1a	100	68.630	Amphiprion_ocellaris
ENSRNOG00000009545	Polr1a	100	65.873	ENSAPEG00000016105	polr1a	97	71.528	Amphiprion_percula
ENSRNOG00000009545	Polr1a	100	65.603	ENSATEG00000016773	polr1a	100	66.241	Anabas_testudineus
ENSRNOG00000009545	Polr1a	85	73.043	ENSAPLG00000013871	POLR1A	99	72.907	Anas_platyrhynchos
ENSRNOG00000009545	Polr1a	99	69.472	ENSACAG00000012141	POLR1A	99	69.200	Anolis_carolinensis
ENSRNOG00000009545	Polr1a	100	87.370	ENSANAG00000033927	POLR1A	100	87.486	Aotus_nancymaae
ENSRNOG00000009545	Polr1a	100	62.623	ENSACLG00000020541	polr1a	100	62.065	Astatotilapia_calliptera
ENSRNOG00000009545	Polr1a	100	87.819	ENSBTAG00000006481	POLR1A	100	87.594	Bos_taurus
ENSRNOG00000009545	Polr1a	99	38.901	WBGene00012999	rpoa-1	98	38.908	Caenorhabditis_elegans
ENSRNOG00000009545	Polr1a	100	86.450	ENSCJAG00000019547	POLR1A	100	86.740	Callithrix_jacchus
ENSRNOG00000009545	Polr1a	100	87.529	ENSCAFG00000007613	POLR1A	100	87.703	Canis_familiaris
ENSRNOG00000009545	Polr1a	100	87.761	ENSCAFG00020014752	POLR1A	100	87.935	Canis_lupus_dingo
ENSRNOG00000009545	Polr1a	100	86.954	ENSCHIG00000018204	POLR1A	100	86.430	Capra_hircus
ENSRNOG00000009545	Polr1a	100	86.361	ENSTSYG00000002761	POLR1A	100	86.361	Carlito_syrichta
ENSRNOG00000009545	Polr1a	97	84.031	ENSCAPG00000010132	POLR1A	100	84.031	Cavia_aperea
ENSRNOG00000009545	Polr1a	100	88.650	ENSCPOG00000012350	POLR1A	100	88.650	Cavia_porcellus
ENSRNOG00000009545	Polr1a	100	87.087	ENSCCAG00000019839	POLR1A	100	87.261	Cebus_capucinus
ENSRNOG00000009545	Polr1a	100	87.840	ENSCATG00000029786	POLR1A	100	88.188	Cercocebus_atys
ENSRNOG00000009545	Polr1a	100	89.250	ENSCLAG00000005187	POLR1A	100	88.727	Chinchilla_lanigera
ENSRNOG00000009545	Polr1a	100	87.898	ENSCSAG00000016251	POLR1A	100	88.246	Chlorocebus_sabaeus
ENSRNOG00000009545	Polr1a	99	74.810	ENSCPBG00000001115	POLR1A	99	74.709	Chrysemys_picta_bellii
ENSRNOG00000009545	Polr1a	99	46.758	ENSCSAVG00000007184	-	99	46.477	Ciona_savignyi
ENSRNOG00000009545	Polr1a	100	85.012	ENSCANG00000031785	POLR1A	100	84.838	Colobus_angolensis_palliatus
ENSRNOG00000009545	Polr1a	100	89.115	ENSCGRG00001006651	Polr1a	100	89.290	Cricetulus_griseus_chok1gshd
ENSRNOG00000009545	Polr1a	60	93.854	ENSCGRG00000010834	Polr1a	100	94.146	Cricetulus_griseus_crigri
ENSRNOG00000009545	Polr1a	100	61.570	ENSCSEG00000020190	polr1a	100	61.302	Cynoglossus_semilaevis
ENSRNOG00000009545	Polr1a	100	63.841	ENSCVAG00000020941	polr1a	100	63.458	Cyprinodon_variegatus
ENSRNOG00000009545	Polr1a	100	67.188	ENSDARG00000098375	polr1a	100	66.859	Danio_rerio
ENSRNOG00000009545	Polr1a	100	81.892	ENSDNOG00000010829	POLR1A	100	81.892	Dasypus_novemcinctus
ENSRNOG00000009545	Polr1a	100	89.166	ENSDORG00000008298	Polr1a	100	89.166	Dipodomys_ordii
ENSRNOG00000009545	Polr1a	80	43.670	FBgn0019938	RpI1	99	43.098	Drosophila_melanogaster
ENSRNOG00000009545	Polr1a	72	96.875	ENSETEG00000000412	-	72	96.875	Echinops_telfairi
ENSRNOG00000009545	Polr1a	89	47.644	ENSEBUG00000005667	-	99	47.935	Eptatretus_burgeri
ENSRNOG00000009545	Polr1a	100	88.246	ENSEASG00005001625	POLR1A	100	88.246	Equus_asinus_asinus
ENSRNOG00000009545	Polr1a	100	88.130	ENSECAG00000030510	-	100	90.093	Equus_caballus
ENSRNOG00000009545	Polr1a	100	88.130	ENSECAG00000010092	POLR1A	100	90.093	Equus_caballus
ENSRNOG00000009545	Polr1a	100	88.130	ENSECAG00000036306	-	100	90.093	Equus_caballus
ENSRNOG00000009545	Polr1a	85	93.617	ENSEEUG00000000676	POLR1A	85	93.333	Erinaceus_europaeus
ENSRNOG00000009545	Polr1a	100	65.935	ENSELUG00000012769	polr1a	99	66.802	Esox_lucius
ENSRNOG00000009545	Polr1a	100	87.768	ENSFCAG00000008966	POLR1A	100	87.942	Felis_catus
ENSRNOG00000009545	Polr1a	99	71.840	ENSFALG00000010082	POLR1A	99	71.706	Ficedula_albicollis
ENSRNOG00000009545	Polr1a	100	88.889	ENSFDAG00000013726	POLR1A	100	88.714	Fukomys_damarensis
ENSRNOG00000009545	Polr1a	100	61.606	ENSFHEG00000005996	polr1a	100	61.369	Fundulus_heteroclitus
ENSRNOG00000009545	Polr1a	100	60.303	ENSGMOG00000002230	polr1a	100	60.221	Gadus_morhua
ENSRNOG00000009545	Polr1a	91	69.423	ENSGALG00000038160	-	99	69.403	Gallus_gallus
ENSRNOG00000009545	Polr1a	100	63.974	ENSGAFG00000015266	polr1a	100	63.953	Gambusia_affinis
ENSRNOG00000009545	Polr1a	100	64.117	ENSGACG00000018791	polr1a	100	63.830	Gasterosteus_aculeatus
ENSRNOG00000009545	Polr1a	89	75.882	ENSGAGG00000004984	-	96	80.779	Gopherus_agassizii
ENSRNOG00000009545	Polr1a	100	87.377	ENSGGOG00000001788	POLR1A	100	87.666	Gorilla_gorilla
ENSRNOG00000009545	Polr1a	90	63.615	ENSHBUG00000020021	polr1a	96	68.085	Haplochromis_burtoni
ENSRNOG00000009545	Polr1a	100	89.290	ENSHGLG00000006334	POLR1A	100	89.290	Heterocephalus_glaber_female
ENSRNOG00000009545	Polr1a	100	88.973	ENSHGLG00100006614	POLR1A	100	88.973	Heterocephalus_glaber_male
ENSRNOG00000009545	Polr1a	100	60.902	ENSHCOG00000003345	polr1a	100	60.784	Hippocampus_comes
ENSRNOG00000009545	Polr1a	100	66.338	ENSIPUG00000013174	polr1a	100	65.950	Ictalurus_punctatus
ENSRNOG00000009545	Polr1a	100	86.946	ENSSTOG00000012580	POLR1A	100	87.005	Ictidomys_tridecemlineatus
ENSRNOG00000009545	Polr1a	100	90.000	ENSJJAG00000013113	Polr1a	100	90.000	Jaculus_jaculus
ENSRNOG00000009545	Polr1a	100	65.058	ENSKMAG00000007399	polr1a	100	64.651	Kryptolebias_marmoratus
ENSRNOG00000009545	Polr1a	94	68.776	ENSLBEG00000015401	polr1a	99	68.781	Labrus_bergylta
ENSRNOG00000009545	Polr1a	53	76.227	ENSLACG00000003218	polr1a	99	76.227	Latimeria_chalumnae
ENSRNOG00000009545	Polr1a	100	70.366	ENSLOCG00000010881	polr1a	100	70.424	Lepisosteus_oculatus
ENSRNOG00000009545	Polr1a	100	87.784	ENSLAFG00000014948	POLR1A	100	87.784	Loxodonta_africana
ENSRNOG00000009545	Polr1a	100	87.724	ENSMFAG00000046097	POLR1A	100	87.840	Macaca_fascicularis
ENSRNOG00000009545	Polr1a	100	87.724	ENSMMUG00000015815	POLR1A	100	88.072	Macaca_mulatta
ENSRNOG00000009545	Polr1a	100	87.724	ENSMNEG00000043313	POLR1A	100	88.072	Macaca_nemestrina
ENSRNOG00000009545	Polr1a	100	87.203	ENSMLEG00000042428	POLR1A	100	87.551	Mandrillus_leucophaeus
ENSRNOG00000009545	Polr1a	100	65.876	ENSMAMG00000016565	polr1a	100	66.010	Mastacembelus_armatus
ENSRNOG00000009545	Polr1a	100	65.719	ENSMZEG00005004915	polr1a	100	65.159	Maylandia_zebra
ENSRNOG00000009545	Polr1a	99	69.387	ENSMGAG00000013111	POLR1A	99	69.444	Meleagris_gallopavo
ENSRNOG00000009545	Polr1a	92	94.278	ENSMAUG00000008497	Polr1a	100	94.723	Mesocricetus_auratus
ENSRNOG00000009545	Polr1a	100	88.137	ENSMICG00000000757	POLR1A	100	87.674	Microcebus_murinus
ENSRNOG00000009545	Polr1a	100	94.584	ENSMOCG00000000122	Polr1a	100	94.467	Microtus_ochrogaster
ENSRNOG00000009545	Polr1a	100	64.668	ENSMMOG00000010216	polr1a	100	64.651	Mola_mola
ENSRNOG00000009545	Polr1a	100	74.484	ENSMODG00000009335	POLR1A	80	81.460	Monodelphis_domestica
ENSRNOG00000009545	Polr1a	100	65.197	ENSMALG00000013363	polr1a	100	65.139	Monopterus_albus
ENSRNOG00000009545	Polr1a	100	94.351	MGP_CAROLIEiJ_G0028494	Polr1a	100	94.409	Mus_caroli
ENSRNOG00000009545	Polr1a	100	94.292	ENSMUSG00000049553	Polr1a	100	94.351	Mus_musculus
ENSRNOG00000009545	Polr1a	100	95.513	MGP_PahariEiJ_G0022230	Polr1a	100	95.513	Mus_pahari
ENSRNOG00000009545	Polr1a	100	91.881	MGP_SPRETEiJ_G0029499	Polr1a	100	93.136	Mus_spretus
ENSRNOG00000009545	Polr1a	100	88.116	ENSMPUG00000009135	POLR1A	100	88.290	Mustela_putorius_furo
ENSRNOG00000009545	Polr1a	100	87.030	ENSMLUG00000015723	POLR1A	100	87.203	Myotis_lucifugus
ENSRNOG00000009545	Polr1a	100	92.375	ENSNGAG00000017907	Polr1a	100	92.375	Nannospalax_galili
ENSRNOG00000009545	Polr1a	100	65.719	ENSNBRG00000000519	polr1a	100	65.217	Neolamprologus_brichardi
ENSRNOG00000009545	Polr1a	100	85.476	ENSNLEG00000002264	POLR1A	100	85.648	Nomascus_leucogenys
ENSRNOG00000009545	Polr1a	75	92.913	ENSMEUG00000011665	-	75	92.913	Notamacropus_eugenii
ENSRNOG00000009545	Polr1a	99	82.305	ENSOPRG00000008269	POLR1A	100	81.732	Ochotona_princeps
ENSRNOG00000009545	Polr1a	100	88.656	ENSODEG00000003542	POLR1A	100	89.063	Octodon_degus
ENSRNOG00000009545	Polr1a	100	66.164	ENSONIG00000015895	polr1a	100	65.699	Oreochromis_niloticus
ENSRNOG00000009545	Polr1a	100	89.024	ENSOCUG00000010138	POLR1A	100	88.837	Oryctolagus_cuniculus
ENSRNOG00000009545	Polr1a	100	64.774	ENSORLG00000008753	polr1a	99	64.423	Oryzias_latipes
ENSRNOG00000009545	Polr1a	100	63.536	ENSORLG00020020726	polr1a	99	63.252	Oryzias_latipes_hni
ENSRNOG00000009545	Polr1a	96	72.340	ENSORLG00015016071	polr1a	99	72.222	Oryzias_latipes_hsok
ENSRNOG00000009545	Polr1a	100	88.188	ENSOGAG00000004031	POLR1A	100	87.840	Otolemur_garnettii
ENSRNOG00000009545	Polr1a	100	87.392	ENSOARG00000020601	POLR1A	100	86.813	Ovis_aries
ENSRNOG00000009545	Polr1a	100	87.203	ENSPPAG00000042450	POLR1A	100	87.493	Pan_paniscus
ENSRNOG00000009545	Polr1a	100	87.884	ENSPPRG00000006702	POLR1A	100	88.058	Panthera_pardus
ENSRNOG00000009545	Polr1a	100	87.406	ENSPTIG00000018783	POLR1A	100	87.579	Panthera_tigris_altaica
ENSRNOG00000009545	Polr1a	100	87.145	ENSPTRG00000012147	POLR1A	100	87.435	Pan_troglodytes
ENSRNOG00000009545	Polr1a	100	87.840	ENSPANG00000025908	POLR1A	100	88.188	Papio_anubis
ENSRNOG00000009545	Polr1a	94	72.917	ENSPKIG00000005468	polr1a	99	72.917	Paramormyrops_kingsleyae
ENSRNOG00000009545	Polr1a	63	72.475	ENSPSIG00000009321	-	99	70.845	Pelodiscus_sinensis
ENSRNOG00000009545	Polr1a	55	67.941	ENSPMGG00000009718	polr1a	95	67.941	Periophthalmus_magnuspinnatus
ENSRNOG00000009545	Polr1a	100	95.227	ENSPEMG00000022224	Polr1a	100	95.227	Peromyscus_maniculatus_bairdii
ENSRNOG00000009545	Polr1a	95	79.352	ENSPCIG00000004222	POLR1A	99	79.352	Phascolarctos_cinereus
ENSRNOG00000009545	Polr1a	100	64.153	ENSPFOG00000005025	polr1a	100	64.153	Poecilia_formosa
ENSRNOG00000009545	Polr1a	100	64.419	ENSPLAG00000021389	polr1a	100	64.419	Poecilia_latipinna
ENSRNOG00000009545	Polr1a	100	62.399	ENSPMEG00000006463	polr1a	100	62.804	Poecilia_mexicana
ENSRNOG00000009545	Polr1a	100	64.600	ENSPREG00000002389	polr1a	100	64.368	Poecilia_reticulata
ENSRNOG00000009545	Polr1a	100	86.856	ENSPPYG00000012217	POLR1A	100	87.145	Pongo_abelii
ENSRNOG00000009545	Polr1a	92	88.000	ENSPCAG00000011582	POLR1A	92	88.000	Procavia_capensis
ENSRNOG00000009545	Polr1a	100	88.542	ENSPCOG00000026987	POLR1A	100	88.368	Propithecus_coquereli
ENSRNOG00000009545	Polr1a	95	84.915	ENSPVAG00000012674	POLR1A	95	85.578	Pteropus_vampyrus
ENSRNOG00000009545	Polr1a	100	65.719	ENSPNYG00000000026	polr1a	100	65.159	Pundamilia_nyererei
ENSRNOG00000009545	Polr1a	100	67.671	ENSPNAG00000019223	polr1a	99	69.628	Pygocentrus_nattereri
ENSRNOG00000009545	Polr1a	100	87.145	ENSRBIG00000028335	POLR1A	100	87.377	Rhinopithecus_bieti
ENSRNOG00000009545	Polr1a	100	87.087	ENSRROG00000031473	POLR1A	100	87.319	Rhinopithecus_roxellana
ENSRNOG00000009545	Polr1a	99	36.955	YOR341W	RPA190	99	36.955	Saccharomyces_cerevisiae
ENSRNOG00000009545	Polr1a	100	86.798	ENSSBOG00000030262	POLR1A	100	87.087	Saimiri_boliviensis_boliviensis
ENSRNOG00000009545	Polr1a	100	73.337	ENSSHAG00000014739	POLR1A	100	73.121	Sarcophilus_harrisii
ENSRNOG00000009545	Polr1a	100	67.364	ENSSFOG00015019716	polr1a	100	67.149	Scleropages_formosus
ENSRNOG00000009545	Polr1a	100	65.009	ENSSMAG00000014342	polr1a	100	64.945	Scophthalmus_maximus
ENSRNOG00000009545	Polr1a	100	66.108	ENSSDUG00000014631	polr1a	100	66.416	Seriola_dumerili
ENSRNOG00000009545	Polr1a	100	64.344	ENSSLDG00000024095	polr1a	100	64.228	Seriola_lalandi_dorsalis
ENSRNOG00000009545	Polr1a	75	95.745	ENSSARG00000003136	-	74	95.745	Sorex_araneus
ENSRNOG00000009545	Polr1a	100	70.145	ENSSPUG00000004215	POLR1A	98	75.897	Sphenodon_punctatus
ENSRNOG00000009545	Polr1a	64	72.336	ENSSPAG00000016341	polr1a	94	72.336	Stegastes_partitus
ENSRNOG00000009545	Polr1a	83	89.316	ENSSSCG00000008226	POLR1A	99	89.286	Sus_scrofa
ENSRNOG00000009545	Polr1a	99	70.838	ENSTGUG00000010704	POLR1A	100	70.956	Taeniopygia_guttata
ENSRNOG00000009545	Polr1a	100	62.867	ENSTRUG00000002210	polr1a	99	62.816	Takifugu_rubripes
ENSRNOG00000009545	Polr1a	100	59.689	ENSTNIG00000010116	polr1a	100	59.573	Tetraodon_nigroviridis
ENSRNOG00000009545	Polr1a	74	95.575	ENSTBEG00000008646	POLR1A	74	95.575	Tupaia_belangeri
ENSRNOG00000009545	Polr1a	100	83.865	ENSTTRG00000008597	POLR1A	100	83.575	Tursiops_truncatus
ENSRNOG00000009545	Polr1a	68	88.230	ENSUAMG00000012158	-	94	87.956	Ursus_americanus
ENSRNOG00000009545	Polr1a	100	86.609	ENSUMAG00000006700	POLR1A	100	86.477	Ursus_maritimus
ENSRNOG00000009545	Polr1a	100	87.471	ENSVVUG00000001245	POLR1A	100	87.645	Vulpes_vulpes
ENSRNOG00000009545	Polr1a	100	68.418	ENSXETG00000001952	polr1a	100	69.784	Xenopus_tropicalis
ENSRNOG00000009545	Polr1a	100	64.443	ENSXMAG00000004032	polr1a	100	64.344	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001054	RNA polymerase I activity	-	IEA	Function
GO:0001054	RNA polymerase I activity	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003682	chromatin binding	-	ISS	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	9422795.	IDA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	9422795.	IDA	Component
GO:0005736	RNA polymerase I complex	-	IEA	Component
GO:0005736	RNA polymerase I complex	-	ISO	Component
GO:0006360	transcription by RNA polymerase I	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0009303	rRNA transcription	9422795.	IDA	Process
GO:1904750	negative regulation of protein localization to nucleolus	-	IEA	Process
GO:1904750	negative regulation of protein localization to nucleolus	-	ISO	Process