EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000009663 (Gene tree)
Gene ID
79116
Gene Symbol
Apex1
Alias
APE|APEN|Apex|REF-1
Full Name
apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
2104 bases
Position
chr15:27849979-27852082
Accession
2126
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000013176Exo_endo_phosPF03372.231e-2111
ENSRNOP00000068673Exo_endo_phosPF03372.231e-2111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000013176-1213XM_006251913ENSRNOP00000013176317 (aa)XP_006251975P43138
ENSRNOT00000087958-1225-ENSRNOP00000068673317 (aa)-P43138
Gene Model
Click here to download ENSRNOG00000009663's gene model file
Pathways
Pathway IDPathway NameSource
rno03410Base excision repairKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009663's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000009663Apex110093.396ENSG00000100823APEX110093.396Homo_sapiens
ENSRNOG00000009663Apex18869.534ENSAPOG00000017002apex19965.079Acanthochromis_polyacanthus
ENSRNOG00000009663Apex110094.654ENSAMEG00000005418APEX110094.654Ailuropoda_melanoleuca
ENSRNOG00000009663Apex18870.863ENSACIG00000010653apex19770.242Amphilophus_citrinellus
ENSRNOG00000009663Apex18869.176ENSAOCG00000009649apex19964.984Amphiprion_ocellaris
ENSRNOG00000009663Apex18869.176ENSAPEG00000021453apex19964.984Amphiprion_percula
ENSRNOG00000009663Apex19966.879ENSATEG00000002883apex19766.879Anabas_testudineus
ENSRNOG00000009663Apex110069.782ENSACAG00000008099APEX110069.782Anolis_carolinensis
ENSRNOG00000009663Apex110094.654ENSANAG00000030117APEX110094.654Aotus_nancymaae
ENSRNOG00000009663Apex18771.377ENSACLG00000018441apex19966.667Astatotilapia_calliptera
ENSRNOG00000009663Apex19965.714ENSAMXG00000034699apex19865.714Astyanax_mexicanus
ENSRNOG00000009663Apex110092.453ENSBTAG00000002745APEX110092.453Bos_taurus
ENSRNOG00000009663Apex18045.312WBGene00001372exo-38845.312Caenorhabditis_elegans
ENSRNOG00000009663Apex110094.654ENSCJAG00000009726APEX110094.654Callithrix_jacchus
ENSRNOG00000009663Apex110094.654ENSCAFG00000032033APEX110094.654Canis_familiaris
ENSRNOG00000009663Apex110094.654ENSCAFG00020014377-10094.654Canis_lupus_dingo
ENSRNOG00000009663Apex15491.279ENSCAFG00020023002-9691.279Canis_lupus_dingo
ENSRNOG00000009663Apex110092.138ENSCHIG00000007298-10092.138Capra_hircus
ENSRNOG00000009663Apex19873.397ENSCHIG00000014537-9973.397Capra_hircus
ENSRNOG00000009663Apex110093.082ENSTSYG00000034813APEX110093.082Carlito_syrichta
ENSRNOG00000009663Apex18587.823ENSCAPG00000016235APEX19196.186Cavia_aperea
ENSRNOG00000009663Apex110092.767ENSCPOG00000030909APEX110092.767Cavia_porcellus
ENSRNOG00000009663Apex110080.818ENSCCAG00000031931-10080.818Cebus_capucinus
ENSRNOG00000009663Apex110094.654ENSCCAG00000033056-10094.654Cebus_capucinus
ENSRNOG00000009663Apex110093.396ENSCATG00000015580APEX110093.396Cercocebus_atys
ENSRNOG00000009663Apex110093.396ENSCLAG00000001002APEX110093.396Chinchilla_lanigera
ENSRNOG00000009663Apex110093.082ENSCSAG00000016685-10093.082Chlorocebus_sabaeus
ENSRNOG00000009663Apex110093.082ENSCSAG00000016670-10093.082Chlorocebus_sabaeus
ENSRNOG00000009663Apex110070.533ENSCPBG00000009567APEX110070.533Chrysemys_picta_bellii
ENSRNOG00000009663Apex19153.898ENSCING00000008137-9453.898Ciona_intestinalis
ENSRNOG00000009663Apex110047.319ENSCSAVG00000007144-10052.510Ciona_savignyi
ENSRNOG00000009663Apex110093.711ENSCANG00000030726APEX110093.711Colobus_angolensis_palliatus
ENSRNOG00000009663Apex110094.006ENSCGRG00001017046Apex110094.006Cricetulus_griseus_chok1gshd
ENSRNOG00000009663Apex110094.006ENSCGRG00000008984Apex110094.006Cricetulus_griseus_crigri
ENSRNOG00000009663Apex19964.353ENSCSEG00000017499apex19964.353Cynoglossus_semilaevis
ENSRNOG00000009663Apex19966.667ENSCVAG00000022075apex19966.667Cyprinodon_variegatus
ENSRNOG00000009663Apex110065.615ENSDARG00000045843apex110065.300Danio_rerio
ENSRNOG00000009663Apex110089.308ENSDNOG00000042234APEX19589.308Dasypus_novemcinctus
ENSRNOG00000009663Apex110092.767ENSDORG00000001616Apex110092.767Dipodomys_ordii
ENSRNOG00000009663Apex110092.453ENSETEG00000004855-10092.453Echinops_telfairi
ENSRNOG00000009663Apex17564.017ENSEBUG00000000622-9264.017Eptatretus_burgeri
ENSRNOG00000009663Apex110094.654ENSEASG00005017489APEX17494.654Equus_asinus_asinus
ENSRNOG00000009663Apex110094.654ENSECAG00000022325APEX18294.654Equus_caballus
ENSRNOG00000009663Apex19193.403ENSEEUG00000012569APEX110093.403Erinaceus_europaeus
ENSRNOG00000009663Apex110064.984ENSELUG00000021706apex110065.300Esox_lucius
ENSRNOG00000009663Apex110095.283ENSFCAG00000030869APEX110095.283Felis_catus
ENSRNOG00000009663Apex110093.082ENSFDAG00000006120APEX110093.082Fukomys_damarensis
ENSRNOG00000009663Apex19968.571ENSFHEG00000009031apex18368.571Fundulus_heteroclitus
ENSRNOG00000009663Apex19961.905ENSGMOG00000007943apex19961.905Gadus_morhua
ENSRNOG00000009663Apex19967.302ENSGAFG00000005311apex19967.302Gambusia_affinis
ENSRNOG00000009663Apex19965.615ENSGACG00000019497apex19969.173Gasterosteus_aculeatus
ENSRNOG00000009663Apex110069.906ENSGAGG00000014999APEX110069.906Gopherus_agassizii
ENSRNOG00000009663Apex110093.711ENSGGOG00000002128APEX110093.711Gorilla_gorilla
ENSRNOG00000009663Apex19966.032ENSHBUG00000005894apex19966.772Haplochromis_burtoni
ENSRNOG00000009663Apex110093.396ENSHGLG00000002848APEX110093.396Heterocephalus_glaber_female
ENSRNOG00000009663Apex110093.396ENSHGLG00100017878APEX110093.396Heterocephalus_glaber_male
ENSRNOG00000009663Apex19965.823ENSHCOG00000009961apex19966.352Hippocampus_comes
ENSRNOG00000009663Apex110067.712ENSIPUG00000005799apex110067.712Ictalurus_punctatus
ENSRNOG00000009663Apex110093.396ENSSTOG00000010096APEX110093.396Ictidomys_tridecemlineatus
ENSRNOG00000009663Apex19484.228ENSJJAG00000020465-9684.228Jaculus_jaculus
ENSRNOG00000009663Apex110093.082ENSJJAG00000012067-10093.082Jaculus_jaculus
ENSRNOG00000009663Apex110083.333ENSJJAG00000003660-10083.333Jaculus_jaculus
ENSRNOG00000009663Apex19966.349ENSKMAG00000021171apex19966.349Kryptolebias_marmoratus
ENSRNOG00000009663Apex19964.127ENSLBEG00000010248apex19964.127Labrus_bergylta
ENSRNOG00000009663Apex110065.931ENSLACG00000008617APEX110065.931Latimeria_chalumnae
ENSRNOG00000009663Apex110066.149ENSLOCG00000015516apex19966.149Lepisosteus_oculatus
ENSRNOG00000009663Apex110091.509ENSLAFG00000021872APEX110091.509Loxodonta_africana
ENSRNOG00000009663Apex110093.082ENSMFAG00000002565APEX110093.082Macaca_fascicularis
ENSRNOG00000009663Apex110093.082ENSMMUG00000048039APEX110093.082Macaca_mulatta
ENSRNOG00000009663Apex110093.082ENSMNEG00000036944APEX110093.082Macaca_nemestrina
ENSRNOG00000009663Apex110093.396ENSMLEG00000042125APEX110093.396Mandrillus_leucophaeus
ENSRNOG00000009663Apex19966.667ENSMAMG00000023526apex19966.667Mastacembelus_armatus
ENSRNOG00000009663Apex18771.377ENSMZEG00005014187apex19966.667Maylandia_zebra
ENSRNOG00000009663Apex110093.691ENSMAUG00000013994Apex110093.691Mesocricetus_auratus
ENSRNOG00000009663Apex110094.340ENSMICG00000043554APEX110094.340Microcebus_murinus
ENSRNOG00000009663Apex110095.268ENSMOCG00000013721Apex110095.268Microtus_ochrogaster
ENSRNOG00000009663Apex18867.500ENSMMOG00000010031apex19763.009Mola_mola
ENSRNOG00000009663Apex110083.125ENSMODG00000007125APEX110084.472Monodelphis_domestica
ENSRNOG00000009663Apex18863.799ENSMALG00000011699apex17962.799Monopterus_albus
ENSRNOG00000009663Apex19997.785MGP_CAROLIEiJ_G0019209Apex110098.305Mus_caroli
ENSRNOG00000009663Apex110098.423ENSMUSG00000035960Apex110098.423Mus_musculus
ENSRNOG00000009663Apex110097.476MGP_PahariEiJ_G0030232Apex110097.476Mus_pahari
ENSRNOG00000009663Apex110098.423MGP_SPRETEiJ_G0020101Apex110098.423Mus_spretus
ENSRNOG00000009663Apex110093.750ENSMLUG00000028957APEX110093.750Myotis_lucifugus
ENSRNOG00000009663Apex110070.440ENSNGAG00000021748-9970.440Nannospalax_galili
ENSRNOG00000009663Apex110094.340ENSNGAG00000002725-10094.340Nannospalax_galili
ENSRNOG00000009663Apex18771.014ENSNBRG00000005334apex19166.349Neolamprologus_brichardi
ENSRNOG00000009663Apex110094.025ENSNLEG00000010839APEX110094.025Nomascus_leucogenys
ENSRNOG00000009663Apex110084.543ENSMEUG00000014519APEX110084.543Notamacropus_eugenii
ENSRNOG00000009663Apex110092.138ENSOPRG00000014029APEX110092.138Ochotona_princeps
ENSRNOG00000009663Apex110093.711ENSODEG00000001703-10093.711Octodon_degus
ENSRNOG00000009663Apex110070.370ENSODEG00000006583-10070.370Octodon_degus
ENSRNOG00000009663Apex19774.757ENSODEG00000004777-9974.757Octodon_degus
ENSRNOG00000009663Apex18871.583ENSONIG00000012089apex19966.984Oreochromis_niloticus
ENSRNOG00000009663Apex19082.456ENSOANG00000008836APEX18078.086Ornithorhynchus_anatinus
ENSRNOG00000009663Apex110094.340ENSOCUG00000005022APEX110094.340Oryctolagus_cuniculus
ENSRNOG00000009663Apex19966.981ENSORLG00000012378apex19966.981Oryzias_latipes
ENSRNOG00000009663Apex19966.981ENSORLG00020021371apex19966.981Oryzias_latipes_hni
ENSRNOG00000009663Apex19966.981ENSORLG00015020089apex19966.981Oryzias_latipes_hsok
ENSRNOG00000009663Apex19966.667ENSOMEG00000018876apex19966.667Oryzias_melastigma
ENSRNOG00000009663Apex19883.654ENSOGAG00000029355-10083.654Otolemur_garnettii
ENSRNOG00000009663Apex110093.082ENSOGAG00000013335-10093.082Otolemur_garnettii
ENSRNOG00000009663Apex19978.025ENSOARG00000014424-9978.025Ovis_aries
ENSRNOG00000009663Apex110091.195ENSOARG00000019740-10091.195Ovis_aries
ENSRNOG00000009663Apex19788.636ENSOARG00000001876-10088.636Ovis_aries
ENSRNOG00000009663Apex110093.711ENSPPAG00000038760APEX110093.711Pan_paniscus
ENSRNOG00000009663Apex110095.597ENSPPRG00000011794APEX110095.597Panthera_pardus
ENSRNOG00000009663Apex110095.283ENSPTIG00000014829APEX110095.283Panthera_tigris_altaica
ENSRNOG00000009663Apex110093.711ENSPTRG00000006093APEX110093.711Pan_troglodytes
ENSRNOG00000009663Apex110093.396ENSPANG00000022757APEX110093.396Papio_anubis
ENSRNOG00000009663Apex18768.231ENSPKIG00000003504apex110064.198Paramormyrops_kingsleyae
ENSRNOG00000009663Apex110054.683ENSPMGG00000016596apex19754.683Periophthalmus_magnuspinnatus
ENSRNOG00000009663Apex110097.161ENSPEMG00000019097Apex110097.161Peromyscus_maniculatus_bairdii
ENSRNOG00000009663Apex19565.232ENSPMAG00000007275-10065.232Petromyzon_marinus
ENSRNOG00000009663Apex110083.699ENSPCIG00000023274APEX110085.358Phascolarctos_cinereus
ENSRNOG00000009663Apex18872.760ENSPFOG00000004178apex19967.302Poecilia_formosa
ENSRNOG00000009663Apex18872.401ENSPLAG00000012779apex19966.984Poecilia_latipinna
ENSRNOG00000009663Apex18872.760ENSPMEG00000019623apex19967.302Poecilia_mexicana
ENSRNOG00000009663Apex18872.043ENSPREG00000014298apex19966.667Poecilia_reticulata
ENSRNOG00000009663Apex110093.082ENSPPYG00000005565APEX110093.082Pongo_abelii
ENSRNOG00000009663Apex110090.252ENSPCAG00000010376APEX110090.252Procavia_capensis
ENSRNOG00000009663Apex110094.340ENSPCOG00000021564APEX110094.340Propithecus_coquereli
ENSRNOG00000009663Apex110093.125ENSPVAG00000010736APEX110093.125Pteropus_vampyrus
ENSRNOG00000009663Apex18771.377ENSPNYG00000023940apex19966.667Pundamilia_nyererei
ENSRNOG00000009663Apex19365.203ENSPNAG00000020897apex19665.085Pygocentrus_nattereri
ENSRNOG00000009663Apex110093.396ENSRBIG00000038325APEX19993.396Rhinopithecus_bieti
ENSRNOG00000009663Apex110079.811ENSSBOG00000031372-10079.811Saimiri_boliviensis_boliviensis
ENSRNOG00000009663Apex110094.340ENSSBOG00000018921-10094.340Saimiri_boliviensis_boliviensis
ENSRNOG00000009663Apex110082.099ENSSHAG00000013524APEX110083.129Sarcophilus_harrisii
ENSRNOG00000009663Apex110062.776ENSSFOG00015001948apex110062.776Scleropages_formosus
ENSRNOG00000009663Apex19965.397ENSSMAG00000013348apex19965.397Scophthalmus_maximus
ENSRNOG00000009663Apex19966.032ENSSDUG00000016377apex19966.032Seriola_dumerili
ENSRNOG00000009663Apex19966.667ENSSLDG00000023005apex19966.667Seriola_lalandi_dorsalis
ENSRNOG00000009663Apex19072.632ENSSPUG00000000531APEX19572.632Sphenodon_punctatus
ENSRNOG00000009663Apex19965.397ENSSPAG00000000458apex19965.397Stegastes_partitus
ENSRNOG00000009663Apex110055.418ENSSSCG00000039705-10055.418Sus_scrofa
ENSRNOG00000009663Apex110094.654ENSSSCG00000040060-10094.654Sus_scrofa
ENSRNOG00000009663Apex17460.169ENSTGUG00000014378APEX110060.169Taeniopygia_guttata
ENSRNOG00000009663Apex18867.626ENSTRUG00000004268apex19563.438Takifugu_rubripes
ENSRNOG00000009663Apex19963.492ENSTNIG00000005778apex19963.492Tetraodon_nigroviridis
ENSRNOG00000009663Apex110090.252ENSTBEG00000006405APEX110090.252Tupaia_belangeri
ENSRNOG00000009663Apex17494.068ENSTTRG00000007860APEX110094.068Tursiops_truncatus
ENSRNOG00000009663Apex110094.340ENSUAMG00000010457APEX110094.340Ursus_americanus
ENSRNOG00000009663Apex110094.340ENSUMAG00000009178APEX110094.340Ursus_maritimus
ENSRNOG00000009663Apex17489.407ENSVPAG00000005083APEX110089.407Vicugna_pacos
ENSRNOG00000009663Apex110094.654ENSVVUG00000009010APEX110094.654Vulpes_vulpes
ENSRNOG00000009663Apex110065.625ENSXETG00000024773apex110065.625Xenopus_tropicalis
ENSRNOG00000009663Apex18872.401ENSXCOG00000015233apex19967.619Xiphophorus_couchianus
ENSRNOG00000009663Apex18872.401ENSXMAG00000006195apex19967.619Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000723telomere maintenance-ISOProcess
GO:0003677DNA binding-ISOFunction
GO:0003677DNA binding-ISSFunction
GO:0003684damaged DNA binding-ISOFunction
GO:0003684damaged DNA binding-ISSFunction
GO:0003691double-stranded telomeric DNA binding-IEAFunction
GO:0003691double-stranded telomeric DNA binding-ISOFunction
GO:0003713transcription coactivator activity-ISOFunction
GO:0003713transcription coactivator activity-ISSFunction
GO:0003723RNA binding-IEAFunction
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity21873635.IBAFunction
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity-ISOFunction
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity-ISSFunction
GO:0004519endonuclease activity-ISOFunction
GO:0004521endoribonuclease activity19401441.IDAFunction
GO:0004528phosphodiesterase I activity21873635.IBAFunction
GO:0005515protein binding17280489.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus12173070.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005667transcription factor complex15084519.IDAComponent
GO:0005730nucleolus-ISOComponent
GO:0005730nucleolus-ISSComponent
GO:0005737cytoplasm12173070.IDAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005739mitochondrion11182545.IDAComponent
GO:0005739mitochondrion-ISOComponent
GO:0005783endoplasmic reticulum-IEAComponent
GO:0005813centrosome-IEAComponent
GO:0005813centrosome-ISOComponent
GO:0006281DNA repair-ISOProcess
GO:0006281DNA repair-ISSProcess
GO:0006284base-excision repair21873635.IBAProcess
GO:0006284base-excision repair-ISOProcess
GO:0006310DNA recombination-IEAProcess
GO:0007568aging12742531.IDAProcess
GO:0008081phosphoric diester hydrolase activity-ISOFunction
GO:0008309double-stranded DNA exodeoxyribonuclease activity-ISOFunction
GO:0008311double-stranded DNA 3'-5' exodeoxyribonuclease activity21873635.IBAFunction
GO:00084083'-5' exonuclease activity-ISOFunction
GO:00084083'-5' exonuclease activity-ISSFunction
GO:0010243response to organonitrogen compound15344903.IEPProcess
GO:0014912negative regulation of smooth muscle cell migration19038866.IMPProcess
GO:0016491oxidoreductase activity-ISOFunction
GO:0016491oxidoreductase activity-ISSFunction
GO:0016607nuclear speck-ISOComponent
GO:0016607nuclear speck-ISSComponent
GO:0016890site-specific endodeoxyribonuclease activity, specific for altered base-ISOFunction
GO:0016890site-specific endodeoxyribonuclease activity, specific for altered base-ISSFunction
GO:0031490chromatin DNA binding-ISOFunction
GO:0031490chromatin DNA binding-ISSFunction
GO:0042493response to drug17264098.IEPProcess
GO:0042981regulation of apoptotic process-ISOProcess
GO:0042981regulation of apoptotic process-ISSProcess
GO:0043488regulation of mRNA stability-ISOProcess
GO:0043488regulation of mRNA stability-ISSProcess
GO:0044877protein-containing complex binding15084519.IPIFunction
GO:0045454cell redox homeostasis-IEAProcess
GO:0045454cell redox homeostasis-ISOProcess
GO:0046872metal ion binding-ISOFunction
GO:0046872metal ion binding-ISSFunction
GO:0048471perinuclear region of cytoplasm-ISOComponent
GO:0048471perinuclear region of cytoplasm-ISSComponent
GO:0051059NF-kappaB binding17602955.IDAFunction
GO:0055114oxidation-reduction process-IEAProcess
GO:0070301cellular response to hydrogen peroxide12884291.IDAProcess
GO:0070301cellular response to hydrogen peroxide12173070.IEPProcess
GO:0071320cellular response to cAMP12173070.IEPProcess
GO:0071375cellular response to peptide hormone stimulus12173070.IEPProcess
GO:0071417cellular response to organonitrogen compound12173070.IEPProcess
GO:0080111DNA demethylation-ISOProcess
GO:0080111DNA demethylation-ISSProcess
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic-IEAProcess
GO:0097698telomere maintenance via base-excision repair-IEAProcess
GO:0097698telomere maintenance via base-excision repair-ISOProcess
GO:0140078class I DNA-(apurinic or apyrimidinic site) endonuclease activity-IEAFunction
GO:1900087positive regulation of G1/S transition of mitotic cell cycle12730053.IMPProcess
GO:1903508positive regulation of nucleic acid-templated transcription-IEAProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us