EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009716 (Gene tree)
Gene ID: 259170
Gene Symbol: Casc3
Alias: Btz|Mln51
Full Name: cancer susceptibility 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 21501 bases
Position: chr10:86724427-86745927
Accession: 628766
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000013204	Btz	PF09405.10	1.1e-23	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000013204	-	3622	-	ENSRNOP00000013204	637 (aa)	-	G3V793

Gene Model

Click here to download ENSRNOG00000009716's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009716's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009716	Casc3	53	90.560	ENSG00000108349	CASC3	92	92.715	Homo_sapiens
ENSRNOG00000009716	Casc3	81	52.191	ENSAPOG00000008467	casc3	78	52.548	Acanthochromis_polyacanthus
ENSRNOG00000009716	Casc3	76	52.239	ENSACIG00000000720	casc3	83	52.052	Amphilophus_citrinellus
ENSRNOG00000009716	Casc3	83	52.903	ENSAOCG00000016676	casc3	61	61.582	Amphiprion_ocellaris
ENSRNOG00000009716	Casc3	83	53.386	ENSAPEG00000006787	casc3	61	61.582	Amphiprion_percula
ENSRNOG00000009716	Casc3	81	55.144	ENSATEG00000017196	casc3	77	53.312	Anabas_testudineus
ENSRNOG00000009716	Casc3	99	61.878	ENSACAG00000002674	CASC3	99	62.845	Anolis_carolinensis
ENSRNOG00000009716	Casc3	72	95.755	ENSANAG00000031954	-	100	95.755	Aotus_nancymaae
ENSRNOG00000009716	Casc3	99	86.431	ENSANAG00000034820	-	99	79.121	Aotus_nancymaae
ENSRNOG00000009716	Casc3	80	56.051	ENSACLG00000016198	casc3	66	54.747	Astatotilapia_calliptera
ENSRNOG00000009716	Casc3	80	59.744	ENSAMXG00000032452	casc3	68	57.827	Astyanax_mexicanus
ENSRNOG00000009716	Casc3	100	94.040	ENSBTAG00000006250	CASC3	91	93.709	Bos_taurus
ENSRNOG00000009716	Casc3	100	90.397	ENSCJAG00000016032	CASC3	92	91.391	Callithrix_jacchus
ENSRNOG00000009716	Casc3	100	93.709	ENSCAFG00000016141	CASC3	91	94.702	Canis_familiaris
ENSRNOG00000009716	Casc3	100	91.749	ENSCAFG00020018882	CASC3	100	92.056	Canis_lupus_dingo
ENSRNOG00000009716	Casc3	100	92.053	ENSCHIG00000006338	CASC3	91	91.722	Capra_hircus
ENSRNOG00000009716	Casc3	100	93.215	ENSTSYG00000002975	CASC3	80	94.144	Carlito_syrichta
ENSRNOG00000009716	Casc3	86	87.906	ENSCAPG00000010514	CASC3	90	90.698	Cavia_aperea
ENSRNOG00000009716	Casc3	100	87.611	ENSCPOG00000015139	CASC3	91	88.496	Cavia_porcellus
ENSRNOG00000009716	Casc3	100	89.381	ENSCLAG00000013730	CASC3	91	89.676	Chinchilla_lanigera
ENSRNOG00000009716	Casc3	50	77.778	ENSCPBG00000004750	CASC3	83	82.949	Chrysemys_picta_bellii
ENSRNOG00000009716	Casc3	100	96.333	ENSCGRG00001014706	Casc3	95	97.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000009716	Casc3	100	89.488	ENSCGRG00000001952	Casc3	91	96.833	Cricetulus_griseus_crigri
ENSRNOG00000009716	Casc3	91	51.266	ENSCSEG00000010047	casc3	79	49.547	Cynoglossus_semilaevis
ENSRNOG00000009716	Casc3	81	56.173	ENSCVAG00000014935	casc3	78	55.763	Cyprinodon_variegatus
ENSRNOG00000009716	Casc3	96	57.895	ENSDARG00000029911	casc3	81	56.832	Danio_rerio
ENSRNOG00000009716	Casc3	100	92.715	ENSDNOG00000017249	CASC3	88	93.709	Dasypus_novemcinctus
ENSRNOG00000009716	Casc3	100	88.742	ENSETEG00000013720	CASC3	100	76.571	Echinops_telfairi
ENSRNOG00000009716	Casc3	88	37.298	ENSEBUG00000010654	casc3	74	45.989	Eptatretus_burgeri
ENSRNOG00000009716	Casc3	100	91.446	ENSEASG00005002909	CASC3	100	91.913	Equus_asinus_asinus
ENSRNOG00000009716	Casc3	53	92.035	ENSECAG00000019947	CASC3	80	94.702	Equus_caballus
ENSRNOG00000009716	Casc3	100	93.709	ENSFCAG00000014998	CASC3	91	94.702	Felis_catus
ENSRNOG00000009716	Casc3	88	71.674	ENSFALG00000000412	CASC3	98	70.796	Ficedula_albicollis
ENSRNOG00000009716	Casc3	93	86.667	ENSFDAG00000020696	CASC3	91	86.471	Fukomys_damarensis
ENSRNOG00000009716	Casc3	82	55.947	ENSFHEG00000015793	casc3	72	55.200	Fundulus_heteroclitus
ENSRNOG00000009716	Casc3	99	74.699	ENSGALG00000031813	CASC3	50	74.699	Gallus_gallus
ENSRNOG00000009716	Casc3	81	53.629	ENSGAFG00000017148	casc3	54	58.947	Gambusia_affinis
ENSRNOG00000009716	Casc3	88	76.148	ENSGAGG00000008432	CASC3	93	78.853	Gopherus_agassizii
ENSRNOG00000009716	Casc3	80	56.051	ENSHBUG00000013155	casc3	66	54.747	Haplochromis_burtoni
ENSRNOG00000009716	Casc3	100	89.735	ENSHGLG00000012117	CASC3	91	90.397	Heterocephalus_glaber_female
ENSRNOG00000009716	Casc3	88	89.778	ENSHGLG00100002268	CASC3	90	90.541	Heterocephalus_glaber_male
ENSRNOG00000009716	Casc3	91	49.488	ENSHCOG00000002664	casc3	79	47.649	Hippocampus_comes
ENSRNOG00000009716	Casc3	91	58.788	ENSIPUG00000002679	casc3	60	70.290	Ictalurus_punctatus
ENSRNOG00000009716	Casc3	100	92.625	ENSSTOG00000006374	CASC3	91	93.709	Ictidomys_tridecemlineatus
ENSRNOG00000009716	Casc3	100	91.445	ENSJJAG00000023525	Casc3	91	91.445	Jaculus_jaculus
ENSRNOG00000009716	Casc3	62	79.787	ENSKMAG00000019507	casc3	60	71.818	Kryptolebias_marmoratus
ENSRNOG00000009716	Casc3	70	69.173	ENSLBEG00000005435	casc3	60	58.115	Labrus_bergylta
ENSRNOG00000009716	Casc3	84	66.767	ENSLACG00000013200	CASC3	78	66.467	Latimeria_chalumnae
ENSRNOG00000009716	Casc3	75	73.430	ENSLOCG00000013518	casc3	65	70.531	Lepisosteus_oculatus
ENSRNOG00000009716	Casc3	100	91.391	ENSLAFG00000000606	CASC3	91	92.384	Loxodonta_africana
ENSRNOG00000009716	Casc3	100	91.900	ENSMFAG00000041496	CASC3	100	92.835	Macaca_fascicularis
ENSRNOG00000009716	Casc3	88	92.285	ENSMLEG00000029049	CASC3	88	93.243	Mandrillus_leucophaeus
ENSRNOG00000009716	Casc3	82	53.725	ENSMAMG00000005235	casc3	79	49.563	Mastacembelus_armatus
ENSRNOG00000009716	Casc3	80	56.051	ENSMZEG00005003815	casc3	66	54.747	Maylandia_zebra
ENSRNOG00000009716	Casc3	86	73.913	ENSMGAG00000013247	CASC3	88	82.028	Meleagris_gallopavo
ENSRNOG00000009716	Casc3	69	95.960	ENSMAUG00000006023	Casc3	90	94.059	Mesocricetus_auratus
ENSRNOG00000009716	Casc3	100	96.333	ENSMOCG00000013644	Casc3	95	97.000	Microtus_ochrogaster
ENSRNOG00000009716	Casc3	86	53.727	ENSMMOG00000014339	casc3	61	67.143	Mola_mola
ENSRNOG00000009716	Casc3	99	82.282	ENSMODG00000013044	CASC3	83	83.784	Monodelphis_domestica
ENSRNOG00000009716	Casc3	76	49.905	ENSMALG00000019771	casc3	83	50.288	Monopterus_albus
ENSRNOG00000009716	Casc3	100	98.662	MGP_CAROLIEiJ_G0017099	Casc3	91	98.662	Mus_caroli
ENSRNOG00000009716	Casc3	100	98.662	ENSMUSG00000078676	Casc3	91	98.662	Mus_musculus
ENSRNOG00000009716	Casc3	100	98.328	MGP_SPRETEiJ_G0017943	Casc3	91	98.328	Mus_spretus
ENSRNOG00000009716	Casc3	100	93.377	ENSMPUG00000014903	CASC3	91	94.371	Mustela_putorius_furo
ENSRNOG00000009716	Casc3	100	88.079	ENSMLUG00000010520	CASC3	91	93.046	Myotis_lucifugus
ENSRNOG00000009716	Casc3	100	94.000	ENSNGAG00000023121	Casc3	91	96.333	Nannospalax_galili
ENSRNOG00000009716	Casc3	53	89.676	ENSNLEG00000001598	CASC3	91	92.384	Nomascus_leucogenys
ENSRNOG00000009716	Casc3	81	92.593	ENSMEUG00000015662	CASC3	89	76.412	Notamacropus_eugenii
ENSRNOG00000009716	Casc3	70	88.294	ENSOPRG00000007240	-	66	91.000	Ochotona_princeps
ENSRNOG00000009716	Casc3	100	88.791	ENSODEG00000017858	CASC3	91	91.148	Octodon_degus
ENSRNOG00000009716	Casc3	82	55.085	ENSONIG00000009337	casc3	99	45.957	Oreochromis_niloticus
ENSRNOG00000009716	Casc3	59	72.687	ENSOANG00000003499	-	69	75.000	Ornithorhynchus_anatinus
ENSRNOG00000009716	Casc3	100	94.020	ENSOCUG00000002954	CASC3	91	94.352	Oryctolagus_cuniculus
ENSRNOG00000009716	Casc3	82	53.448	ENSORLG00000023125	casc3	71	52.063	Oryzias_latipes
ENSRNOG00000009716	Casc3	99	92.053	ENSOGAG00000034486	CASC3	90	93.046	Otolemur_garnettii
ENSRNOG00000009716	Casc3	100	94.371	ENSOARG00000013239	CASC3	91	94.040	Ovis_aries
ENSRNOG00000009716	Casc3	53	90.560	ENSPPAG00000035069	CASC3	92	90.397	Pan_paniscus
ENSRNOG00000009716	Casc3	100	93.709	ENSPPRG00000023670	CASC3	91	94.702	Panthera_pardus
ENSRNOG00000009716	Casc3	90	92.797	ENSPTIG00000010891	CASC3	82	94.492	Panthera_tigris_altaica
ENSRNOG00000009716	Casc3	93	59.159	ENSPKIG00000023186	casc3	79	56.805	Paramormyrops_kingsleyae
ENSRNOG00000009716	Casc3	100	98.328	ENSPEMG00000009774	Casc3	95	98.328	Peromyscus_maniculatus_bairdii
ENSRNOG00000009716	Casc3	100	74.822	ENSPCIG00000025678	CASC3	100	76.245	Phascolarctos_cinereus
ENSRNOG00000009716	Casc3	82	60.476	ENSPFOG00000017632	casc3	99	46.522	Poecilia_formosa
ENSRNOG00000009716	Casc3	84	53.571	ENSPLAG00000005268	casc3	80	52.853	Poecilia_latipinna
ENSRNOG00000009716	Casc3	65	46.849	ENSPMEG00000010299	casc3	79	47.193	Poecilia_mexicana
ENSRNOG00000009716	Casc3	71	67.143	ENSPREG00000011856	casc3	82	51.852	Poecilia_reticulata
ENSRNOG00000009716	Casc3	53	89.676	ENSPPYG00000008467	CASC3	91	92.330	Pongo_abelii
ENSRNOG00000009716	Casc3	100	90.560	ENSPVAG00000008556	CASC3	91	93.377	Pteropus_vampyrus
ENSRNOG00000009716	Casc3	80	56.051	ENSPNYG00000011962	casc3	66	54.747	Pundamilia_nyererei
ENSRNOG00000009716	Casc3	86	59.744	ENSPNAG00000015928	casc3	81	57.827	Pygocentrus_nattereri
ENSRNOG00000009716	Casc3	87	90.741	ENSSBOG00000031406	CASC3	88	92.593	Saimiri_boliviensis_boliviensis
ENSRNOG00000009716	Casc3	87	90.667	ENSSHAG00000013338	CASC3	89	90.541	Sarcophilus_harrisii
ENSRNOG00000009716	Casc3	89	60.883	ENSSFOG00015002645	casc3	62	69.281	Scleropages_formosus
ENSRNOG00000009716	Casc3	79	68.056	ENSSMAG00000016096	casc3	60	65.161	Scophthalmus_maximus
ENSRNOG00000009716	Casc3	84	54.582	ENSSDUG00000016893	casc3	61	62.360	Seriola_dumerili
ENSRNOG00000009716	Casc3	79	52.250	ENSSLDG00000020308	casc3	82	51.429	Seriola_lalandi_dorsalis
ENSRNOG00000009716	Casc3	83	88.496	ENSSARG00000010378	CASC3	89	86.494	Sorex_araneus
ENSRNOG00000009716	Casc3	81	53.846	ENSSPAG00000023008	casc3	61	62.983	Stegastes_partitus
ENSRNOG00000009716	Casc3	88	93.778	ENSSSCG00000017477	CASC3	89	93.694	Sus_scrofa
ENSRNOG00000009716	Casc3	72	67.366	ENSTGUG00000002300	CASC3	99	67.748	Taeniopygia_guttata
ENSRNOG00000009716	Casc3	80	56.637	ENSTRUG00000000673	casc3	77	52.516	Takifugu_rubripes
ENSRNOG00000009716	Casc3	72	96.698	ENSTBEG00000017459	CASC3	67	96.698	Tupaia_belangeri
ENSRNOG00000009716	Casc3	84	90.560	ENSTTRG00000016896	CASC3	88	91.445	Tursiops_truncatus
ENSRNOG00000009716	Casc3	100	91.749	ENSUAMG00000015116	CASC3	100	91.770	Ursus_americanus
ENSRNOG00000009716	Casc3	88	92.000	ENSUMAG00000017697	CASC3	99	91.729	Ursus_maritimus
ENSRNOG00000009716	Casc3	73	97.479	ENSVPAG00000000799	CASC3	67	97.479	Vicugna_pacos
ENSRNOG00000009716	Casc3	100	93.709	ENSVVUG00000000997	CASC3	91	94.702	Vulpes_vulpes
ENSRNOG00000009716	Casc3	88	57.692	ENSXETG00000024395	casc3	89	58.862	Xenopus_tropicalis
ENSRNOG00000009716	Casc3	76	63.743	ENSXMAG00000013937	casc3	62	59.896	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0008298	intracellular mRNA localization	-	IEA	Process
GO:0008298	intracellular mRNA localization	-	ISO	Process
GO:0010494	cytoplasmic stress granule	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0019899	enzyme binding	-	ISO	Function
GO:0030425	dendrite	-	IEA	Component
GO:0031625	ubiquitin protein ligase binding	-	IEA	Function
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0031965	nuclear membrane	-	IEA	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0035145	exon-exon junction complex	21873635.	IBA	Component
GO:0035145	exon-exon junction complex	-	IEA	Component
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0071006	U2-type catalytic step 1 spliceosome	-	IEA	Component
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISO	Component
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISS	Component
GO:1990904	ribonucleoprotein complex	-	ISO	Component