EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000009722 (Gene tree)
Gene ID: 303241
Gene Symbol: Chd3
Alias: LOC303241
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 21771 bases
Position: chr10:55943446-55965216
Accession: 1311923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000053890	ResIII	PF04851.15	2e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000057058	-	6993	XM_008767924	ENSRNOP00000053890	1835 (aa)	XP_017453283	F1LPP8

Gene Model

Click here to download ENSRNOG00000009722's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009722's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000009722	Chd3	98	69.579	ENSRNOG00000011268	Chd5	92	68.997
ENSRNOG00000009722	Chd3	76	74.663	ENSRNOG00000018309	Chd4	90	70.899

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000009722	Chd3	100	96.950	ENSG00000170004	CHD3	92	96.950	Homo_sapiens
ENSRNOG00000009722	Chd3	86	79.500	ENSAPOG00000005614	chd3	94	79.500	Acanthochromis_polyacanthus
ENSRNOG00000009722	Chd3	74	96.047	ENSAMEG00000003025	-	100	96.047	Ailuropoda_melanoleuca
ENSRNOG00000009722	Chd3	88	79.555	ENSACIG00000019671	chd3	99	80.273	Amphilophus_citrinellus
ENSRNOG00000009722	Chd3	87	80.401	ENSAOCG00000023784	chd3	97	80.830	Amphiprion_ocellaris
ENSRNOG00000009722	Chd3	100	73.756	ENSATEG00000000848	chd3	99	73.138	Anabas_testudineus
ENSRNOG00000009722	Chd3	100	84.819	ENSACAG00000004276	CHD3	89	84.911	Anolis_carolinensis
ENSRNOG00000009722	Chd3	100	96.841	ENSANAG00000034323	CHD3	97	96.841	Aotus_nancymaae
ENSRNOG00000009722	Chd3	93	79.936	ENSACLG00000009222	chd3	95	74.540	Astatotilapia_calliptera
ENSRNOG00000009722	Chd3	100	95.972	ENSBTAG00000014377	CHD3	91	96.492	Bos_taurus
ENSRNOG00000009722	Chd3	100	96.950	ENSCJAG00000014766	CHD3	92	96.950	Callithrix_jacchus
ENSRNOG00000009722	Chd3	100	96.676	ENSCAFG00000016859	CHD3	92	96.676	Canis_familiaris
ENSRNOG00000009722	Chd3	100	96.676	ENSCAFG00020007422	CHD3	100	96.676	Canis_lupus_dingo
ENSRNOG00000009722	Chd3	100	96.732	ENSCHIG00000016737	CHD3	93	96.732	Capra_hircus
ENSRNOG00000009722	Chd3	100	96.895	ENSTSYG00000035658	CHD3	99	94.018	Carlito_syrichta
ENSRNOG00000009722	Chd3	100	93.682	ENSCAPG00000014864	CHD3	91	93.682	Cavia_aperea
ENSRNOG00000009722	Chd3	100	96.460	ENSCPOG00000022653	CHD3	91	96.460	Cavia_porcellus
ENSRNOG00000009722	Chd3	100	96.732	ENSCCAG00000034792	CHD3	92	96.732	Cebus_capucinus
ENSRNOG00000009722	Chd3	100	96.732	ENSCATG00000041717	CHD3	92	96.732	Cercocebus_atys
ENSRNOG00000009722	Chd3	100	97.004	ENSCLAG00000010523	CHD3	93	97.004	Chinchilla_lanigera
ENSRNOG00000009722	Chd3	100	96.569	ENSCSAG00000011122	CHD3	93	96.569	Chlorocebus_sabaeus
ENSRNOG00000009722	Chd3	92	86.160	ENSCPBG00000011966	CHD3	99	86.404	Chrysemys_picta_bellii
ENSRNOG00000009722	Chd3	100	96.678	ENSCANG00000037641	CHD3	99	93.376	Colobus_angolensis_palliatus
ENSRNOG00000009722	Chd3	100	97.820	ENSCGRG00001011306	Chd3	93	97.820	Cricetulus_griseus_chok1gshd
ENSRNOG00000009722	Chd3	94	91.105	ENSCGRG00000007878	Chd3	92	90.930	Cricetulus_griseus_crigri
ENSRNOG00000009722	Chd3	92	79.344	ENSCSEG00000004489	chd3	95	77.385	Cynoglossus_semilaevis
ENSRNOG00000009722	Chd3	89	81.673	ENSCVAG00000007293	chd3	90	82.591	Cyprinodon_variegatus
ENSRNOG00000009722	Chd3	100	75.448	ENSDARG00000021405	chd3	99	74.376	Danio_rerio
ENSRNOG00000009722	Chd3	100	80.596	ENSDNOG00000047846	CHD3	84	91.494	Dasypus_novemcinctus
ENSRNOG00000009722	Chd3	100	96.678	ENSDORG00000010713	Chd3	93	96.678	Dipodomys_ordii
ENSRNOG00000009722	Chd3	98	91.249	ENSETEG00000017733	CHD3	93	91.249	Echinops_telfairi
ENSRNOG00000009722	Chd3	58	77.870	ENSEBUG00000008310	chd3	99	70.121	Eptatretus_burgeri
ENSRNOG00000009722	Chd3	100	96.786	ENSEASG00005019360	CHD3	100	96.786	Equus_asinus_asinus
ENSRNOG00000009722	Chd3	100	96.841	ENSECAG00000010051	CHD3	100	96.841	Equus_caballus
ENSRNOG00000009722	Chd3	92	93.443	ENSEEUG00000015205	CHD3	86	94.444	Erinaceus_europaeus
ENSRNOG00000009722	Chd3	84	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSRNOG00000009722	Chd3	100	95.915	ENSFCAG00000009629	CHD3	89	95.915	Felis_catus
ENSRNOG00000009722	Chd3	100	96.732	ENSFDAG00000008220	CHD3	93	96.732	Fukomys_damarensis
ENSRNOG00000009722	Chd3	90	79.898	ENSGMOG00000013599	chd3	86	80.508	Gadus_morhua
ENSRNOG00000009722	Chd3	59	76.688	ENSGAFG00000004055	chd3	91	77.798	Gambusia_affinis
ENSRNOG00000009722	Chd3	99	71.497	ENSGACG00000019275	chd3	90	73.788	Gasterosteus_aculeatus
ENSRNOG00000009722	Chd3	81	85.438	ENSGAGG00000013164	CHD3	94	90.947	Gopherus_agassizii
ENSRNOG00000009722	Chd3	100	96.841	ENSGGOG00000013496	CHD3	99	93.484	Gorilla_gorilla
ENSRNOG00000009722	Chd3	100	96.678	ENSHGLG00000012017	CHD3	92	96.678	Heterocephalus_glaber_female
ENSRNOG00000009722	Chd3	89	89.451	ENSHGLG00100013902	CHD3	92	89.451	Heterocephalus_glaber_male
ENSRNOG00000009722	Chd3	96	74.169	ENSHCOG00000010170	chd3	90	74.728	Hippocampus_comes
ENSRNOG00000009722	Chd3	90	79.802	ENSIPUG00000003271	chd3	94	79.236	Ictalurus_punctatus
ENSRNOG00000009722	Chd3	100	96.187	ENSSTOG00000025907	CHD3	93	96.242	Ictidomys_tridecemlineatus
ENSRNOG00000009722	Chd3	100	95.752	ENSJJAG00000017633	Chd3	93	95.752	Jaculus_jaculus
ENSRNOG00000009722	Chd3	87	90.047	ENSKMAG00000019292	chd3	95	74.417	Kryptolebias_marmoratus
ENSRNOG00000009722	Chd3	91	75.986	ENSLBEG00000028485	chd3	84	87.826	Labrus_bergylta
ENSRNOG00000009722	Chd3	98	74.960	ENSLACG00000008031	CHD3	92	75.186	Latimeria_chalumnae
ENSRNOG00000009722	Chd3	100	77.244	ENSLOCG00000013965	chd3	90	77.795	Lepisosteus_oculatus
ENSRNOG00000009722	Chd3	95	91.511	ENSLAFG00000000572	CHD3	93	91.511	Loxodonta_africana
ENSRNOG00000009722	Chd3	100	96.678	ENSMFAG00000020113	CHD3	99	94.547	Macaca_fascicularis
ENSRNOG00000009722	Chd3	100	93.736	ENSMMUG00000022221	CHD3	92	93.174	Macaca_mulatta
ENSRNOG00000009722	Chd3	100	96.678	ENSMNEG00000001728	CHD3	99	96.129	Macaca_nemestrina
ENSRNOG00000009722	Chd3	100	96.732	ENSMLEG00000032249	CHD3	92	96.732	Mandrillus_leucophaeus
ENSRNOG00000009722	Chd3	92	75.367	ENSMAMG00000000564	chd3	94	86.705	Mastacembelus_armatus
ENSRNOG00000009722	Chd3	100	97.439	ENSMAUG00000013873	Chd3	99	95.137	Mesocricetus_auratus
ENSRNOG00000009722	Chd3	100	96.786	ENSMICG00000008741	CHD3	92	93.808	Microcebus_murinus
ENSRNOG00000009722	Chd3	100	97.711	ENSMOCG00000004848	Chd3	93	97.711	Microtus_ochrogaster
ENSRNOG00000009722	Chd3	98	74.903	ENSMMOG00000012699	chd3	95	74.626	Mola_mola
ENSRNOG00000009722	Chd3	100	91.453	ENSMODG00000007509	CHD3	100	91.508	Monodelphis_domestica
ENSRNOG00000009722	Chd3	100	98.311	MGP_CAROLIEiJ_G0016564	Chd3	93	96.431	Mus_caroli
ENSRNOG00000009722	Chd3	100	98.529	ENSMUSG00000018474	Chd3	93	96.654	Mus_musculus
ENSRNOG00000009722	Chd3	100	98.583	MGP_PahariEiJ_G0017695	Chd3	93	96.709	Mus_pahari
ENSRNOG00000009722	Chd3	100	98.474	MGP_SPRETEiJ_G0017400	Chd3	93	96.598	Mus_spretus
ENSRNOG00000009722	Chd3	93	96.737	ENSMPUG00000008861	CHD3	100	96.737	Mustela_putorius_furo
ENSRNOG00000009722	Chd3	100	96.028	ENSMLUG00000014643	-	92	95.865	Myotis_lucifugus
ENSRNOG00000009722	Chd3	100	97.495	ENSNGAG00000000773	Chd3	91	97.495	Nannospalax_galili
ENSRNOG00000009722	Chd3	92	75.059	ENSNBRG00000000636	chd3	97	75.646	Neolamprologus_brichardi
ENSRNOG00000009722	Chd3	99	92.794	ENSNLEG00000009770	CHD3	93	93.255	Nomascus_leucogenys
ENSRNOG00000009722	Chd3	87	90.710	ENSMEUG00000005852	CHD3	82	90.710	Notamacropus_eugenii
ENSRNOG00000009722	Chd3	100	94.608	ENSOPRG00000011069	CHD3	98	94.553	Ochotona_princeps
ENSRNOG00000009722	Chd3	100	96.569	ENSODEG00000017785	CHD3	92	96.569	Octodon_degus
ENSRNOG00000009722	Chd3	98	75.562	ENSONIG00000009292	chd3	94	76.274	Oreochromis_niloticus
ENSRNOG00000009722	Chd3	100	91.161	ENSOCUG00000029299	CHD3	94	90.786	Oryctolagus_cuniculus
ENSRNOG00000009722	Chd3	84	71.311	ENSORLG00000007107	chd3	88	71.501	Oryzias_latipes
ENSRNOG00000009722	Chd3	56	75.556	ENSORLG00020008387	chd3	86	75.749	Oryzias_latipes_hni
ENSRNOG00000009722	Chd3	76	79.872	ENSOMEG00000013691	chd3	99	76.973	Oryzias_melastigma
ENSRNOG00000009722	Chd3	100	96.078	ENSOGAG00000003216	CHD3	93	96.078	Otolemur_garnettii
ENSRNOG00000009722	Chd3	100	94.127	ENSOARG00000017855	CHD3	92	94.127	Ovis_aries
ENSRNOG00000009722	Chd3	100	94.102	ENSPPAG00000032886	CHD3	99	92.915	Pan_paniscus
ENSRNOG00000009722	Chd3	100	96.351	ENSPPRG00000000626	CHD3	92	96.351	Panthera_pardus
ENSRNOG00000009722	Chd3	100	97.004	ENSPTRG00000008714	CHD3	99	93.700	Pan_troglodytes
ENSRNOG00000009722	Chd3	100	96.732	ENSPANG00000023938	CHD3	99	94.602	Papio_anubis
ENSRNOG00000009722	Chd3	97	79.134	ENSPKIG00000006305	chd3	94	79.134	Paramormyrops_kingsleyae
ENSRNOG00000009722	Chd3	59	89.964	ENSPSIG00000010177	CHD3	98	90.420	Pelodiscus_sinensis
ENSRNOG00000009722	Chd3	100	97.548	ENSPEMG00000014262	Chd3	93	97.548	Peromyscus_maniculatus_bairdii
ENSRNOG00000009722	Chd3	100	91.304	ENSPCIG00000005442	CHD3	93	95.122	Phascolarctos_cinereus
ENSRNOG00000009722	Chd3	98	74.462	ENSPFOG00000012464	chd3	86	74.946	Poecilia_formosa
ENSRNOG00000009722	Chd3	88	87.391	ENSPLAG00000002887	chd3	92	71.823	Poecilia_latipinna
ENSRNOG00000009722	Chd3	52	81.352	ENSPMEG00000016725	chd3	83	75.702	Poecilia_mexicana
ENSRNOG00000009722	Chd3	92	80.769	ENSPREG00000011044	chd3	92	80.352	Poecilia_reticulata
ENSRNOG00000009722	Chd3	100	93.627	ENSPPYG00000007940	CHD3	93	93.627	Pongo_abelii
ENSRNOG00000009722	Chd3	96	96.478	ENSPCAG00000004350	CHD3	90	96.478	Procavia_capensis
ENSRNOG00000009722	Chd3	100	96.786	ENSPCOG00000020952	CHD3	92	96.734	Propithecus_coquereli
ENSRNOG00000009722	Chd3	86	96.292	ENSPVAG00000016344	CHD3	80	95.965	Pteropus_vampyrus
ENSRNOG00000009722	Chd3	97	79.351	ENSPNAG00000020393	chd3	98	81.884	Pygocentrus_nattereri
ENSRNOG00000009722	Chd3	100	93.337	ENSRBIG00000033562	CHD3	99	93.326	Rhinopithecus_bieti
ENSRNOG00000009722	Chd3	100	95.153	ENSRROG00000029554	CHD3	99	94.364	Rhinopithecus_roxellana
ENSRNOG00000009722	Chd3	100	96.950	ENSSBOG00000020719	CHD3	99	96.347	Saimiri_boliviensis_boliviensis
ENSRNOG00000009722	Chd3	100	91.562	ENSSHAG00000014412	CHD3	93	91.671	Sarcophilus_harrisii
ENSRNOG00000009722	Chd3	98	74.694	ENSSFOG00015023123	chd3	98	74.855	Scleropages_formosus
ENSRNOG00000009722	Chd3	87	90.741	ENSSMAG00000006451	chd3	100	74.458	Scophthalmus_maximus
ENSRNOG00000009722	Chd3	54	74.078	ENSSDUG00000005792	chd3	88	74.776	Seriola_dumerili
ENSRNOG00000009722	Chd3	86	81.443	ENSSPAG00000013694	chd3	97	81.443	Stegastes_partitus
ENSRNOG00000009722	Chd3	100	96.570	ENSSSCG00000021363	CHD3	100	96.570	Sus_scrofa
ENSRNOG00000009722	Chd3	76	77.574	ENSTRUG00000014990	chd3	89	73.698	Takifugu_rubripes
ENSRNOG00000009722	Chd3	100	73.783	ENSTNIG00000012998	chd3	93	73.679	Tetraodon_nigroviridis
ENSRNOG00000009722	Chd3	68	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSRNOG00000009722	Chd3	99	97.342	ENSTTRG00000010295	CHD3	90	97.342	Tursiops_truncatus
ENSRNOG00000009722	Chd3	99	95.109	ENSUAMG00000005475	CHD3	99	95.217	Ursus_americanus
ENSRNOG00000009722	Chd3	59	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSRNOG00000009722	Chd3	100	96.676	ENSVVUG00000028011	CHD3	96	96.676	Vulpes_vulpes
ENSRNOG00000009722	Chd3	100	73.588	ENSXETG00000012991	chd3	90	73.427	Xenopus_tropicalis
ENSRNOG00000009722	Chd3	50	91.892	ENSXCOG00000000809	chd3	82	91.892	Xiphophorus_couchianus
ENSRNOG00000009722	Chd3	85	86.127	ENSXMAG00000016035	chd3	99	88.095	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005813	centrosome	-	IEA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005815	microtubule organizing center	-	ISO	Component
GO:0006333	chromatin assembly or disassembly	-	IEA	Process
GO:0006333	chromatin assembly or disassembly	-	ISO	Process
GO:0007051	spindle organization	-	IEA	Process
GO:0007051	spindle organization	-	ISO	Process
GO:0007098	centrosome cycle	-	IEA	Process
GO:0007098	centrosome cycle	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016581	NuRD complex	-	IEA	Component
GO:0016581	NuRD complex	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function