EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000009960 (Gene tree)
Gene ID
84401
Gene Symbol
Puf60
Alias
Siahbp1
Full Name
poly-U binding splicing factor 60
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
10978 bases
Position
chr7:117129237-117140214
Accession
621674
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000013353RRM_1PF00076.222.8e-4412
ENSRNOP00000013353RRM_1PF00076.222.8e-4422
ENSRNOP00000053317RRM_1PF00076.223.6e-4412
ENSRNOP00000053317RRM_1PF00076.223.6e-4422
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000013353-1857XM_006241895ENSRNOP00000013353547 (aa)XP_006241957Q9WV25
ENSRNOT00000056481-1883XM_006241894ENSRNOP00000053317563 (aa)XP_006241956A0A0H2UHZ6
Gene Model
Click here to download ENSRNOG00000009960's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000009960's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000009960Puf605934.314ENSRNOG00000015914U2af26136.275
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000009960Puf6010097.806ENSG00000179950PUF6010098.837Homo_sapiens
ENSRNOG00000009960Puf609386.174ENSAPOG00000001713puf60b9986.174Acanthochromis_polyacanthus
ENSRNOG00000009960Puf609995.382ENSAMEG00000006406PUF609995.382Ailuropoda_melanoleuca
ENSRNOG00000009960Puf609277.735ENSACIG00000003263-9978.161Amphilophus_citrinellus
ENSRNOG00000009960Puf609285.988ENSACIG00000021705puf60b10085.988Amphilophus_citrinellus
ENSRNOG00000009960Puf609386.148ENSAOCG00000005395puf60b10086.948Amphiprion_ocellaris
ENSRNOG00000009960Puf609381.559ENSAOCG00000015558-9982.129Amphiprion_ocellaris
ENSRNOG00000009960Puf609383.366ENSAPEG00000011923puf60b9983.366Amphiprion_percula
ENSRNOG00000009960Puf609175.595ENSAPEG00000001836-9976.621Amphiprion_percula
ENSRNOG00000009960Puf609381.143ENSATEG00000006303-9981.524Anabas_testudineus
ENSRNOG00000009960Puf609386.174ENSATEG00000001730puf60b9986.174Anabas_testudineus
ENSRNOG00000009960Puf609398.276ENSAPLG00000010150PUF6010098.276Anas_platyrhynchos
ENSRNOG00000009960Puf609396.374ENSACAG00000001645PUF609796.015Anolis_carolinensis
ENSRNOG00000009960Puf6010098.404ENSANAG00000018626PUF6010098.837Aotus_nancymaae
ENSRNOG00000009960Puf609285.988ENSACLG00000004462puf60b10085.988Astatotilapia_calliptera
ENSRNOG00000009960Puf609276.449ENSAMXG00000041030puf60b10074.719Astyanax_mexicanus
ENSRNOG00000009960Puf609285.323ENSAMXG00000036570puf60a9785.127Astyanax_mexicanus
ENSRNOG00000009960Puf6010098.537ENSBTAG00000037493PUF6010098.537Bos_taurus
ENSRNOG00000009960Puf607650.825WBGene00004389rnp-68951.634Caenorhabditis_elegans
ENSRNOG00000009960Puf6010098.903ENSCJAG00000021485PUF6010098.903Callithrix_jacchus
ENSRNOG00000009960Puf6010098.355ENSCAFG00000001400PUF6010098.355Canis_familiaris
ENSRNOG00000009960Puf6010098.355ENSCAFG00020018754PUF6010098.355Canis_lupus_dingo
ENSRNOG00000009960Puf609997.838ENSCHIG00000001618PUF609197.838Capra_hircus
ENSRNOG00000009960Puf6010098.936ENSTSYG00000011912PUF6010099.225Carlito_syrichta
ENSRNOG00000009960Puf609993.023ENSCPOG00000014613PUF609992.665Cavia_porcellus
ENSRNOG00000009960Puf6010098.537ENSCCAG00000007744PUF6010098.537Cebus_capucinus
ENSRNOG00000009960Puf6010097.806ENSCATG00000035405PUF6010097.806Cercocebus_atys
ENSRNOG00000009960Puf6010099.269ENSCLAG00000009154PUF6010099.269Chinchilla_lanigera
ENSRNOG00000009960Puf609298.837ENSCSAG00000008878PUF6010098.837Chlorocebus_sabaeus
ENSRNOG00000009960Puf609398.276ENSCPBG00000005595PUF609898.276Chrysemys_picta_bellii
ENSRNOG00000009960Puf605763.043ENSCING00000002156-8763.043Ciona_intestinalis
ENSRNOG00000009960Puf609249.343ENSCING00000008436-9849.336Ciona_intestinalis
ENSRNOG00000009960Puf608955.747ENSCSAVG00000001385-9955.385Ciona_savignyi
ENSRNOG00000009960Puf608951.025ENSCSAVG00000004765-9750.617Ciona_savignyi
ENSRNOG00000009960Puf608097.727ENSCANG00000041843PUF6010099.041Colobus_angolensis_palliatus
ENSRNOG00000009960Puf6010099.269ENSCGRG00001017442Puf6010099.269Cricetulus_griseus_chok1gshd
ENSRNOG00000009960Puf6010096.980ENSCGRG00000003717Puf6010096.980Cricetulus_griseus_crigri
ENSRNOG00000009960Puf609882.162ENSCSEG00000019887puf60b9385.389Cynoglossus_semilaevis
ENSRNOG00000009960Puf609175.494ENSCSEG00000014845-8977.668Cynoglossus_semilaevis
ENSRNOG00000009960Puf608480.211ENSCVAG00000001560-9879.958Cyprinodon_variegatus
ENSRNOG00000009960Puf609285.029ENSCVAG00000009386puf60b10086.180Cyprinodon_variegatus
ENSRNOG00000009960Puf609278.947ENSDARG00000001241puf60b9996.825Danio_rerio
ENSRNOG00000009960Puf609286.932ENSDARG00000032175puf60a9993.617Danio_rerio
ENSRNOG00000009960Puf6010080.423ENSDNOG00000043278PUF609980.423Dasypus_novemcinctus
ENSRNOG00000009960Puf609998.559ENSDORG00000004585Puf6010098.516Dipodomys_ordii
ENSRNOG00000009960Puf608951.241FBgn0028577hfp9951.193Drosophila_melanogaster
ENSRNOG00000009960Puf609362.995ENSEBUG00000014291puf60b8566.087Eptatretus_burgeri
ENSRNOG00000009960Puf608972.840ENSEBUG00000005470-8872.428Eptatretus_burgeri
ENSRNOG00000009960Puf6010098.355ENSEASG00005009695PUF6010098.355Equus_asinus_asinus
ENSRNOG00000009960Puf609998.559ENSECAG00000024681PUF609998.516Equus_caballus
ENSRNOG00000009960Puf609383.871ENSELUG00000006507puf60b9980.769Esox_lucius
ENSRNOG00000009960Puf609584.037ENSELUG00000018443-9985.996Esox_lucius
ENSRNOG00000009960Puf6010098.903ENSFCAG00000001045PUF6010099.031Felis_catus
ENSRNOG00000009960Puf609385.632ENSFALG00000001136PUF609886.782Ficedula_albicollis
ENSRNOG00000009960Puf6010099.269ENSFDAG00000017177PUF6010099.269Fukomys_damarensis
ENSRNOG00000009960Puf609384.820ENSFHEG00000020046puf60b10086.564Fundulus_heteroclitus
ENSRNOG00000009960Puf608879.518ENSFHEG00000021687PUF6010080.368Fundulus_heteroclitus
ENSRNOG00000009960Puf609372.180ENSGMOG00000006392puf60b10071.429Gadus_morhua
ENSRNOG00000009960Puf606197.965ENSGALG00000039901PUF609497.965Gallus_gallus
ENSRNOG00000009960Puf609279.537ENSGAFG00000004334-9979.042Gambusia_affinis
ENSRNOG00000009960Puf609384.061ENSGAFG00000021040puf60b10085.988Gambusia_affinis
ENSRNOG00000009960Puf609270.543ENSGACG00000001484-10069.423Gasterosteus_aculeatus
ENSRNOG00000009960Puf609374.102ENSGACG00000004717puf60b9873.435Gasterosteus_aculeatus
ENSRNOG00000009960Puf609398.276ENSGAGG00000013289PUF609298.276Gopherus_agassizii
ENSRNOG00000009960Puf6010097.806ENSGGOG00000004646PUF6010097.806Gorilla_gorilla
ENSRNOG00000009960Puf609382.163ENSHBUG00000009634-10083.135Haplochromis_burtoni
ENSRNOG00000009960Puf609385.389ENSHBUG00000015118puf60b10085.988Haplochromis_burtoni
ENSRNOG00000009960Puf6010099.269ENSHGLG00000006111PUF6010099.269Heterocephalus_glaber_female
ENSRNOG00000009960Puf6010099.269ENSHGLG00100012362PUF6010099.269Heterocephalus_glaber_male
ENSRNOG00000009960Puf609066.994ENSHCOG00000000378-9965.414Hippocampus_comes
ENSRNOG00000009960Puf609282.689ENSHCOG00000015541puf60b10082.288Hippocampus_comes
ENSRNOG00000009960Puf609278.759ENSIPUG00000004660puf60b9978.531Ictalurus_punctatus
ENSRNOG00000009960Puf609382.101ENSIPUG00000002453puf60a9982.798Ictalurus_punctatus
ENSRNOG00000009960Puf6010098.050ENSSTOG00000025037PUF6010098.050Ictidomys_tridecemlineatus
ENSRNOG00000009960Puf6010099.086ENSJJAG00000001076Puf6010099.086Jaculus_jaculus
ENSRNOG00000009960Puf609285.413ENSKMAG00000016745puf60b10086.564Kryptolebias_marmoratus
ENSRNOG00000009960Puf609278.828ENSKMAG00000010106-10076.306Kryptolebias_marmoratus
ENSRNOG00000009960Puf609585.714ENSLBEG00000012505puf60b10085.714Labrus_bergylta
ENSRNOG00000009960Puf606790.710ENSLACG00000005456PUF6010090.437Latimeria_chalumnae
ENSRNOG00000009960Puf609490.207ENSLOCG00000010106puf60b9989.924Lepisosteus_oculatus
ENSRNOG00000009960Puf609996.036ENSLAFG00000022929PUF609996.036Loxodonta_africana
ENSRNOG00000009960Puf6010097.806ENSMFAG00000043373PUF6010097.806Macaca_fascicularis
ENSRNOG00000009960Puf6010097.989ENSMMUG00000013558PUF6010097.989Macaca_mulatta
ENSRNOG00000009960Puf6010097.806ENSMNEG00000031099PUF6010097.806Macaca_nemestrina
ENSRNOG00000009960Puf609298.837ENSMLEG00000040009PUF6010098.837Mandrillus_leucophaeus
ENSRNOG00000009960Puf609485.714ENSMAMG00000010394puf60b10084.299Mastacembelus_armatus
ENSRNOG00000009960Puf609382.922ENSMAMG00000019476-9982.543Mastacembelus_armatus
ENSRNOG00000009960Puf609382.353ENSMZEG00005019425-9982.353Maylandia_zebra
ENSRNOG00000009960Puf609285.988ENSMZEG00005018515puf60b10085.988Maylandia_zebra
ENSRNOG00000009960Puf609398.276ENSMGAG00000013070PUF609898.276Meleagris_gallopavo
ENSRNOG00000009960Puf607299.265ENSMAUG00000014267-10099.488Mesocricetus_auratus
ENSRNOG00000009960Puf6010075.725ENSMAUG00000018549-10075.949Mesocricetus_auratus
ENSRNOG00000009960Puf6010097.695ENSMICG00000012226PUF609999.042Microcebus_murinus
ENSRNOG00000009960Puf6010099.452ENSMOCG00000018780Puf6010099.452Microtus_ochrogaster
ENSRNOG00000009960Puf609286.372ENSMMOG00000004217puf60b10086.372Mola_mola
ENSRNOG00000009960Puf609375.591ENSMMOG00000018059-9976.941Mola_mola
ENSRNOG00000009960Puf6010096.527ENSMODG00000009161PUF6010096.527Monodelphis_domestica
ENSRNOG00000009960Puf609381.025ENSMALG00000000200-9979.623Monopterus_albus
ENSRNOG00000009960Puf609378.598ENSMALG00000006797puf60b9978.598Monopterus_albus
ENSRNOG00000009960Puf60100100.000MGP_CAROLIEiJ_G0019910Puf60100100.000Mus_caroli
ENSRNOG00000009960Puf60100100.000ENSMUSG00000002524Puf60100100.000Mus_musculus
ENSRNOG00000009960Puf60100100.000MGP_PahariEiJ_G0019920Puf60100100.000Mus_pahari
ENSRNOG00000009960Puf60100100.000MGP_SPRETEiJ_G0020812Puf60100100.000Mus_spretus
ENSRNOG00000009960Puf609997.658ENSMPUG00000008137PUF609797.658Mustela_putorius_furo
ENSRNOG00000009960Puf609997.658ENSMLUG00000000238-9897.658Myotis_lucifugus
ENSRNOG00000009960Puf609295.248ENSMLUG00000013032-9895.248Myotis_lucifugus
ENSRNOG00000009960Puf6010099.634ENSNGAG00000000712Puf6010099.806Nannospalax_galili
ENSRNOG00000009960Puf609382.543ENSNBRG00000017223-9982.510Neolamprologus_brichardi
ENSRNOG00000009960Puf607584.471ENSNBRG00000013047puf60b9784.471Neolamprologus_brichardi
ENSRNOG00000009960Puf6010097.806ENSNLEG00000002156PUF6010097.806Nomascus_leucogenys
ENSRNOG00000009960Puf606998.976ENSOPRG00000002147PUF607598.976Ochotona_princeps
ENSRNOG00000009960Puf607498.652ENSODEG00000014024-10098.652Octodon_degus
ENSRNOG00000009960Puf609074.162ENSODEG00000015513-9673.062Octodon_degus
ENSRNOG00000009960Puf609382.576ENSONIG00000014030-9982.576Oreochromis_niloticus
ENSRNOG00000009960Puf609385.417ENSONIG00000006247puf60b9985.417Oreochromis_niloticus
ENSRNOG00000009960Puf609077.930ENSOANG00000006962PUF609977.930Ornithorhynchus_anatinus
ENSRNOG00000009960Puf609179.167ENSORLG00000028655-9979.278Oryzias_latipes
ENSRNOG00000009960Puf609385.389ENSORLG00000012279puf60b10085.413Oryzias_latipes
ENSRNOG00000009960Puf609385.389ENSORLG00020007333puf6010085.413Oryzias_latipes_hni
ENSRNOG00000009960Puf609379.057ENSORLG00020018144-9879.167Oryzias_latipes_hni
ENSRNOG00000009960Puf609384.499ENSORLG00015007718puf60b10085.277Oryzias_latipes_hsok
ENSRNOG00000009960Puf609279.317ENSORLG00015016833-9879.429Oryzias_latipes_hsok
ENSRNOG00000009960Puf609380.114ENSOMEG00000022185-9880.076Oryzias_melastigma
ENSRNOG00000009960Puf609382.900ENSOMEG00000001643puf60b10082.540Oryzias_melastigma
ENSRNOG00000009960Puf609998.378ENSOGAG00000006259PUF609898.378Otolemur_garnettii
ENSRNOG00000009960Puf609396.367ENSOARG00000016235PUF609996.367Ovis_aries
ENSRNOG00000009960Puf6010097.806ENSPPAG00000029933PUF6010097.806Pan_paniscus
ENSRNOG00000009960Puf6010098.759ENSPPRG00000003257PUF6010099.031Panthera_pardus
ENSRNOG00000009960Puf609997.407ENSPTIG00000009795PUF609996.552Panthera_tigris_altaica
ENSRNOG00000009960Puf6010097.623ENSPTRG00000020670PUF6010097.623Pan_troglodytes
ENSRNOG00000009960Puf609997.658ENSPTRG00000043963-9997.588Pan_troglodytes
ENSRNOG00000009960Puf6010097.806ENSPANG00000021936PUF6010097.806Papio_anubis
ENSRNOG00000009960Puf609387.452ENSPKIG00000012204puf60b10088.077Paramormyrops_kingsleyae
ENSRNOG00000009960Puf609883.549ENSPKIG00000004295puf60a9992.353Paramormyrops_kingsleyae
ENSRNOG00000009960Puf609398.088ENSPSIG00000004679PUF609998.088Pelodiscus_sinensis
ENSRNOG00000009960Puf609284.924ENSPMGG00000013444puf60b9984.924Periophthalmus_magnuspinnatus
ENSRNOG00000009960Puf6010099.452ENSPEMG00000008820Puf6010099.452Peromyscus_maniculatus_bairdii
ENSRNOG00000009960Puf609894.955ENSPCIG00000020270PUF609999.040Phascolarctos_cinereus
ENSRNOG00000009960Puf609380.190ENSPFOG00000011118-9980.534Poecilia_formosa
ENSRNOG00000009960Puf609384.820ENSPFOG00000019217puf60b10085.409Poecilia_formosa
ENSRNOG00000009960Puf609285.413ENSPLAG00000010754puf60b10086.564Poecilia_latipinna
ENSRNOG00000009960Puf609876.937ENSPLAG00000017025-9180.153Poecilia_latipinna
ENSRNOG00000009960Puf609876.937ENSPMEG00000009767-9180.534Poecilia_mexicana
ENSRNOG00000009960Puf609384.820ENSPMEG00000000838puf60b10086.564Poecilia_mexicana
ENSRNOG00000009960Puf609382.070ENSPREG00000005440puf60b10084.325Poecilia_reticulata
ENSRNOG00000009960Puf607497.362ENSPPYG00000018951-9597.362Pongo_abelii
ENSRNOG00000009960Puf607499.281ENSPCAG00000014837PUF6010099.281Procavia_capensis
ENSRNOG00000009960Puf6010098.227ENSPCOG00000027981PUF6010098.227Propithecus_coquereli
ENSRNOG00000009960Puf609299.234ENSPVAG00000016167PUF608199.234Pteropus_vampyrus
ENSRNOG00000009960Puf609285.988ENSPNYG00000002556puf60b10085.988Pundamilia_nyererei
ENSRNOG00000009960Puf609382.353ENSPNYG00000004273-9982.353Pundamilia_nyererei
ENSRNOG00000009960Puf609285.352ENSPNAG00000019909puf60a9985.156Pygocentrus_nattereri
ENSRNOG00000009960Puf609976.095ENSPNAG00000019415puf60b9077.318Pygocentrus_nattereri
ENSRNOG00000009960Puf6010097.806ENSRBIG00000035274PUF6010097.806Rhinopithecus_bieti
ENSRNOG00000009960Puf6010097.806ENSRROG00000029360PUF6010097.806Rhinopithecus_roxellana
ENSRNOG00000009960Puf6010092.895ENSSBOG00000027089PUF609897.510Saimiri_boliviensis_boliviensis
ENSRNOG00000009960Puf609195.508ENSSHAG00000006668PUF609695.508Sarcophilus_harrisii
ENSRNOG00000009960Puf609381.884ENSSFOG00015019371puf60a9887.726Scleropages_formosus
ENSRNOG00000009960Puf609282.319ENSSFOG00015019619puf60b9986.235Scleropages_formosus
ENSRNOG00000009960Puf606893.286ENSSMAG00000016381puf60b7393.286Scophthalmus_maximus
ENSRNOG00000009960Puf609280.534ENSSDUG00000007048-9880.916Seriola_dumerili
ENSRNOG00000009960Puf609384.201ENSSDUG00000009935puf60b9984.848Seriola_dumerili
ENSRNOG00000009960Puf609280.835ENSSLDG00000007366-9981.214Seriola_lalandi_dorsalis
ENSRNOG00000009960Puf609286.450ENSSLDG00000024011puf60b10084.486Seriola_lalandi_dorsalis
ENSRNOG00000009960Puf606085.841ENSSPUG00000013518PUF609485.163Sphenodon_punctatus
ENSRNOG00000009960Puf609282.443ENSSPAG00000020285-10083.015Stegastes_partitus
ENSRNOG00000009960Puf609383.364ENSSPAG00000012144puf60b10084.673Stegastes_partitus
ENSRNOG00000009960Puf609997.658ENSSSCG00000038800PUF609898.416Sus_scrofa
ENSRNOG00000009960Puf609395.019ENSTGUG00000012797-10095.019Taeniopygia_guttata
ENSRNOG00000009960Puf609384.848ENSTRUG00000005420puf60b10083.178Takifugu_rubripes
ENSRNOG00000009960Puf609180.361ENSTRUG00000008843-10080.762Takifugu_rubripes
ENSRNOG00000009960Puf609384.848ENSTNIG00000013675puf60b10084.659Tetraodon_nigroviridis
ENSRNOG00000009960Puf609378.394ENSTNIG00000003069-10078.394Tetraodon_nigroviridis
ENSRNOG00000009960Puf607181.503ENSTBEG00000001899-10081.792Tupaia_belangeri
ENSRNOG00000009960Puf605796.284ENSTBEG00000002751-9996.271Tupaia_belangeri
ENSRNOG00000009960Puf609298.450ENSTTRG00000017088PUF6010098.450Tursiops_truncatus
ENSRNOG00000009960Puf6010097.989ENSUAMG00000024917PUF6010097.989Ursus_americanus
ENSRNOG00000009960Puf609493.951ENSUMAG00000000272PUF609892.793Ursus_maritimus
ENSRNOG00000009960Puf609998.018ENSVVUG00000022527PUF6010099.225Vulpes_vulpes
ENSRNOG00000009960Puf609393.893ENSXETG00000012469puf609994.246Xenopus_tropicalis
ENSRNOG00000009960Puf609184.921ENSXCOG00000012355puf60b10086.111Xiphophorus_couchianus
ENSRNOG00000009960Puf609384.820ENSXMAG00000001862puf60b10086.564Xiphophorus_maculatus
ENSRNOG00000009960Puf609380.512ENSXMAG00000010507-9979.724Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-IEAComponent
GO:0005654nucleoplasm-IEAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0006915apoptotic process-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0030054cell junction-IEAComponent
GO:0030054cell junction-ISOComponent
GO:0042802identical protein binding-IEAFunction
GO:0042802identical protein binding-ISOFunction

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