EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000010125 (Gene tree)
Gene ID: 365668
Gene Symbol: Mtrex
Alias: LOC365668|MGC124848|RGD1305984|Skiv2l2
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 69183 bases
Position: chr2:44717781-44786963
Accession: 1305984
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000057426	rRNA_proc-arch	PF13234.6	6.9e-87	1	1
ENSRNOP00000057426	DEAD	PF00270.29	4.8e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000060695	-	3595	-	ENSRNOP00000057426	1066 (aa)	-	D4AE49

Gene Model

Click here to download ENSRNOG00000010125's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000010125's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000010125	Mtrex	89	36.100	ENSRNOG00000000421	Skiv2l	79	36.100

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000010125	Mtrex	97	97.376	ENSG00000039123	MTREX	99	97.376	Homo_sapiens
ENSRNOG00000010125	Mtrex	97	82.609	ENSAPOG00000007814	mtrex	99	82.609	Acanthochromis_polyacanthus
ENSRNOG00000010125	Mtrex	97	96.893	ENSAMEG00000013856	MTREX	99	96.893	Ailuropoda_melanoleuca
ENSRNOG00000010125	Mtrex	88	87.182	ENSACIG00000015117	mtrex	95	87.182	Amphilophus_citrinellus
ENSRNOG00000010125	Mtrex	97	82.529	ENSAOCG00000011884	mtrex	99	82.529	Amphiprion_ocellaris
ENSRNOG00000010125	Mtrex	97	82.432	ENSAPEG00000019384	mtrex	99	82.432	Amphiprion_percula
ENSRNOG00000010125	Mtrex	97	83.188	ENSATEG00000015117	mtrex	99	83.188	Anabas_testudineus
ENSRNOG00000010125	Mtrex	92	92.449	ENSAPLG00000009694	MTREX	99	92.449	Anas_platyrhynchos
ENSRNOG00000010125	Mtrex	97	90.416	ENSACAG00000015200	MTREX	95	90.223	Anolis_carolinensis
ENSRNOG00000010125	Mtrex	98	96.635	ENSANAG00000023095	MTREX	99	97.279	Aotus_nancymaae
ENSRNOG00000010125	Mtrex	97	81.705	ENSACLG00000001921	mtrex	99	82.541	Astatotilapia_calliptera
ENSRNOG00000010125	Mtrex	95	81.532	ENSAMXG00000018751	mtrex	99	83.333	Astyanax_mexicanus
ENSRNOG00000010125	Mtrex	97	96.696	ENSBTAG00000010518	MTREX	99	96.696	Bos_taurus
ENSRNOG00000010125	Mtrex	87	53.326	WBGene00012342	mtr-4	93	52.544	Caenorhabditis_elegans
ENSRNOG00000010125	Mtrex	98	96.923	ENSCJAG00000001773	MTREX	99	96.923	Callithrix_jacchus
ENSRNOG00000010125	Mtrex	97	96.987	ENSCAFG00000006818	MTREX	99	96.987	Canis_familiaris
ENSRNOG00000010125	Mtrex	97	96.987	ENSCAFG00020024352	MTREX	99	96.987	Canis_lupus_dingo
ENSRNOG00000010125	Mtrex	97	96.793	ENSCHIG00000024413	MTREX	99	96.793	Capra_hircus
ENSRNOG00000010125	Mtrex	90	96.875	ENSTSYG00000007389	MTREX	99	96.875	Carlito_syrichta
ENSRNOG00000010125	Mtrex	93	71.630	ENSCAPG00000008696	MTREX	99	71.630	Cavia_aperea
ENSRNOG00000010125	Mtrex	97	96.599	ENSCPOG00000009797	MTREX	99	96.599	Cavia_porcellus
ENSRNOG00000010125	Mtrex	97	97.182	ENSCCAG00000014177	MTREX	99	97.182	Cebus_capucinus
ENSRNOG00000010125	Mtrex	97	97.182	ENSCATG00000042153	MTREX	99	97.182	Cercocebus_atys
ENSRNOG00000010125	Mtrex	97	96.501	ENSCLAG00000006622	MTREX	99	96.501	Chinchilla_lanigera
ENSRNOG00000010125	Mtrex	97	92.636	ENSCSAG00000016445	MTREX	99	92.636	Chlorocebus_sabaeus
ENSRNOG00000010125	Mtrex	63	98.611	ENSCHOG00000010936	-	65	98.611	Choloepus_hoffmanni
ENSRNOG00000010125	Mtrex	97	91.384	ENSCPBG00000026551	MTREX	93	91.384	Chrysemys_picta_bellii
ENSRNOG00000010125	Mtrex	96	65.792	ENSCING00000003239	-	98	65.695	Ciona_intestinalis
ENSRNOG00000010125	Mtrex	96	65.053	ENSCSAVG00000009304	-	98	69.813	Ciona_savignyi
ENSRNOG00000010125	Mtrex	97	97.279	ENSCANG00000035770	MTREX	99	97.279	Colobus_angolensis_palliatus
ENSRNOG00000010125	Mtrex	97	98.056	ENSCGRG00001024680	Mtrex	99	98.056	Cricetulus_griseus_chok1gshd
ENSRNOG00000010125	Mtrex	97	98.056	ENSCGRG00000000307	Mtrex	99	98.056	Cricetulus_griseus_crigri
ENSRNOG00000010125	Mtrex	97	81.431	ENSCSEG00000018621	mtrex	97	81.431	Cynoglossus_semilaevis
ENSRNOG00000010125	Mtrex	97	82.979	ENSCVAG00000004556	mtrex	99	82.979	Cyprinodon_variegatus
ENSRNOG00000010125	Mtrex	96	84.451	ENSDARG00000013457	mtrex	98	84.159	Danio_rerio
ENSRNOG00000010125	Mtrex	97	95.644	ENSDNOG00000015375	MTREX	99	95.547	Dasypus_novemcinctus
ENSRNOG00000010125	Mtrex	97	96.696	ENSDORG00000006782	Mtrex	99	96.696	Dipodomys_ordii
ENSRNOG00000010125	Mtrex	88	66.419	FBgn0001986	Mtr4	91	65.699	Drosophila_melanogaster
ENSRNOG00000010125	Mtrex	87	79.780	ENSETEG00000000727	MTREX	89	79.780	Echinops_telfairi
ENSRNOG00000010125	Mtrex	96	74.074	ENSEBUG00000012869	mtrex	99	73.475	Eptatretus_burgeri
ENSRNOG00000010125	Mtrex	97	96.501	ENSEASG00005013270	MTREX	99	96.501	Equus_asinus_asinus
ENSRNOG00000010125	Mtrex	97	96.599	ENSECAG00000023723	MTREX	99	97.044	Equus_caballus
ENSRNOG00000010125	Mtrex	96	87.707	ENSEEUG00000000527	MTREX	100	87.707	Erinaceus_europaeus
ENSRNOG00000010125	Mtrex	96	84.548	ENSELUG00000004898	mtrex	98	89.186	Esox_lucius
ENSRNOG00000010125	Mtrex	97	96.987	ENSFCAG00000010575	MTREX	99	96.987	Felis_catus
ENSRNOG00000010125	Mtrex	97	89.990	ENSFALG00000010850	MTREX	99	89.990	Ficedula_albicollis
ENSRNOG00000010125	Mtrex	97	96.113	ENSFDAG00000011199	MTREX	99	96.016	Fukomys_damarensis
ENSRNOG00000010125	Mtrex	97	82.625	ENSFHEG00000023014	mtrex	99	81.328	Fundulus_heteroclitus
ENSRNOG00000010125	Mtrex	97	78.551	ENSGMOG00000014702	mtrex	99	79.130	Gadus_morhua
ENSRNOG00000010125	Mtrex	97	90.592	ENSGALG00000014709	MTREX	85	90.495	Gallus_gallus
ENSRNOG00000010125	Mtrex	97	83.012	ENSGAFG00000012425	mtrex	99	83.012	Gambusia_affinis
ENSRNOG00000010125	Mtrex	97	78.428	ENSGACG00000016260	mtrex	96	83.952	Gasterosteus_aculeatus
ENSRNOG00000010125	Mtrex	97	91.094	ENSGAGG00000020036	MTREX	99	90.707	Gopherus_agassizii
ENSRNOG00000010125	Mtrex	97	97.473	ENSGGOG00000001867	MTREX	99	97.473	Gorilla_gorilla
ENSRNOG00000010125	Mtrex	97	81.705	ENSHBUG00000006229	mtrex	99	82.222	Haplochromis_burtoni
ENSRNOG00000010125	Mtrex	97	96.501	ENSHGLG00000019445	SKIV2L2	99	96.501	Heterocephalus_glaber_female
ENSRNOG00000010125	Mtrex	97	96.501	ENSHGLG00100011833	SKIV2L2	99	96.501	Heterocephalus_glaber_male
ENSRNOG00000010125	Mtrex	88	84.004	ENSHCOG00000019995	mtrex	99	84.004	Hippocampus_comes
ENSRNOG00000010125	Mtrex	96	84.533	ENSIPUG00000024348	skiv2l2	98	84.533	Ictalurus_punctatus
ENSRNOG00000010125	Mtrex	97	97.182	ENSSTOG00000010802	MTREX	99	97.182	Ictidomys_tridecemlineatus
ENSRNOG00000010125	Mtrex	97	90.476	ENSJJAG00000020975	Mtrex	99	90.476	Jaculus_jaculus
ENSRNOG00000010125	Mtrex	97	82.302	ENSKMAG00000012642	mtrex	99	82.126	Kryptolebias_marmoratus
ENSRNOG00000010125	Mtrex	97	82.802	ENSLBEG00000019367	mtrex	99	84.921	Labrus_bergylta
ENSRNOG00000010125	Mtrex	97	87.404	ENSLACG00000009075	MTREX	99	87.115	Latimeria_chalumnae
ENSRNOG00000010125	Mtrex	97	86.518	ENSLOCG00000010186	mtrex	99	86.324	Lepisosteus_oculatus
ENSRNOG00000010125	Mtrex	97	94.947	ENSLAFG00000010497	MTREX	99	94.947	Loxodonta_africana
ENSRNOG00000010125	Mtrex	97	97.182	ENSMFAG00000031610	MTREX	99	97.182	Macaca_fascicularis
ENSRNOG00000010125	Mtrex	96	97.463	ENSMMUG00000010379	MTREX	98	97.463	Macaca_mulatta
ENSRNOG00000010125	Mtrex	97	97.182	ENSMNEG00000032746	MTREX	99	97.182	Macaca_nemestrina
ENSRNOG00000010125	Mtrex	97	97.182	ENSMLEG00000041051	MTREX	99	97.182	Mandrillus_leucophaeus
ENSRNOG00000010125	Mtrex	97	81.783	ENSMAMG00000016753	mtrex	96	87.421	Mastacembelus_armatus
ENSRNOG00000010125	Mtrex	97	81.705	ENSMZEG00005000414	mtrex	99	82.222	Maylandia_zebra
ENSRNOG00000010125	Mtrex	92	66.870	ENSMGAG00000003980	MTREX	99	66.870	Meleagris_gallopavo
ENSRNOG00000010125	Mtrex	97	97.959	ENSMAUG00000010727	Mtrex	99	97.959	Mesocricetus_auratus
ENSRNOG00000010125	Mtrex	97	97.765	ENSMICG00000012779	MTREX	99	97.765	Microcebus_murinus
ENSRNOG00000010125	Mtrex	97	98.056	ENSMOCG00000019886	Mtrex	99	98.056	Microtus_ochrogaster
ENSRNOG00000010125	Mtrex	97	80.747	ENSMMOG00000002476	mtrex	99	80.843	Mola_mola
ENSRNOG00000010125	Mtrex	97	92.420	ENSMODG00000019494	MTREX	99	92.323	Monodelphis_domestica
ENSRNOG00000010125	Mtrex	89	81.276	ENSMALG00000002917	mtrex	98	81.276	Monopterus_albus
ENSRNOG00000010125	Mtrex	97	98.445	MGP_CAROLIEiJ_G0018896	Mtrex	99	98.445	Mus_caroli
ENSRNOG00000010125	Mtrex	97	98.542	ENSMUSG00000016018	Mtrex	99	98.542	Mus_musculus
ENSRNOG00000010125	Mtrex	97	98.348	MGP_PahariEiJ_G0015967	Mtrex	99	98.348	Mus_pahari
ENSRNOG00000010125	Mtrex	97	98.542	MGP_SPRETEiJ_G0019775	Mtrex	99	98.542	Mus_spretus
ENSRNOG00000010125	Mtrex	97	97.182	ENSMPUG00000007619	MTREX	99	97.182	Mustela_putorius_furo
ENSRNOG00000010125	Mtrex	97	95.640	ENSMLUG00000001152	MTREX	99	95.640	Myotis_lucifugus
ENSRNOG00000010125	Mtrex	97	97.862	ENSNGAG00000011938	Mtrex	99	97.862	Nannospalax_galili
ENSRNOG00000010125	Mtrex	97	81.801	ENSNBRG00000011293	mtrex	99	82.319	Neolamprologus_brichardi
ENSRNOG00000010125	Mtrex	97	93.307	ENSNLEG00000001494	MTREX	99	93.307	Nomascus_leucogenys
ENSRNOG00000010125	Mtrex	80	89.474	ENSMEUG00000006496	-	82	89.474	Notamacropus_eugenii
ENSRNOG00000010125	Mtrex	93	84.646	ENSOPRG00000008009	MTREX	95	84.646	Ochotona_princeps
ENSRNOG00000010125	Mtrex	97	95.918	ENSODEG00000017234	MTREX	99	95.918	Octodon_degus
ENSRNOG00000010125	Mtrex	97	82.029	ENSONIG00000007587	mtrex	99	82.126	Oreochromis_niloticus
ENSRNOG00000010125	Mtrex	97	97.182	ENSOCUG00000004463	MTREX	99	97.182	Oryctolagus_cuniculus
ENSRNOG00000010125	Mtrex	97	82.046	ENSORLG00000005443	mtrex	99	82.046	Oryzias_latipes
ENSRNOG00000010125	Mtrex	97	81.950	ENSORLG00020006329	mtrex	94	87.021	Oryzias_latipes_hni
ENSRNOG00000010125	Mtrex	97	82.012	ENSORLG00015012924	mtrex	94	87.021	Oryzias_latipes_hsok
ENSRNOG00000010125	Mtrex	97	81.328	ENSOMEG00000008825	mtrex	99	81.328	Oryzias_melastigma
ENSRNOG00000010125	Mtrex	97	97.279	ENSOGAG00000002886	MTREX	99	97.279	Otolemur_garnettii
ENSRNOG00000010125	Mtrex	97	96.512	ENSOARG00000007764	MTREX	99	96.512	Ovis_aries
ENSRNOG00000010125	Mtrex	97	97.376	ENSPPAG00000039291	MTREX	99	97.376	Pan_paniscus
ENSRNOG00000010125	Mtrex	97	96.987	ENSPPRG00000019701	MTREX	99	96.987	Panthera_pardus
ENSRNOG00000010125	Mtrex	97	95.432	ENSPTIG00000009313	MTREX	99	95.432	Panthera_tigris_altaica
ENSRNOG00000010125	Mtrex	97	97.376	ENSPTRG00000016878	MTREX	99	97.376	Pan_troglodytes
ENSRNOG00000010125	Mtrex	97	97.085	ENSPANG00000009697	MTREX	99	97.085	Papio_anubis
ENSRNOG00000010125	Mtrex	97	86.170	ENSPKIG00000020833	mtrex	99	86.170	Paramormyrops_kingsleyae
ENSRNOG00000010125	Mtrex	97	90.338	ENSPSIG00000012150	MTREX	99	91.094	Pelodiscus_sinensis
ENSRNOG00000010125	Mtrex	97	80.364	ENSPMGG00000002582	mtrex	99	80.460	Periophthalmus_magnuspinnatus
ENSRNOG00000010125	Mtrex	93	65.396	ENSPMAG00000009668	mtrex	100	65.296	Petromyzon_marinus
ENSRNOG00000010125	Mtrex	88	96.253	ENSPCIG00000024730	MTREX	99	96.253	Phascolarctos_cinereus
ENSRNOG00000010125	Mtrex	73	85.732	ENSPFOG00000003141	mtrex	98	86.581	Poecilia_formosa
ENSRNOG00000010125	Mtrex	97	82.802	ENSPLAG00000021311	mtrex	99	82.899	Poecilia_latipinna
ENSRNOG00000010125	Mtrex	89	86.301	ENSPMEG00000010597	mtrex	99	86.617	Poecilia_mexicana
ENSRNOG00000010125	Mtrex	97	82.705	ENSPREG00000003089	mtrex	99	82.802	Poecilia_reticulata
ENSRNOG00000010125	Mtrex	96	97.854	ENSPPYG00000015469	MTREX	98	97.854	Pongo_abelii
ENSRNOG00000010125	Mtrex	91	80.198	ENSPCAG00000013120	MTREX	93	80.198	Procavia_capensis
ENSRNOG00000010125	Mtrex	95	92.008	ENSPCOG00000018092	MTREX	99	92.008	Propithecus_coquereli
ENSRNOG00000010125	Mtrex	97	97.182	ENSPVAG00000002445	MTREX	99	97.182	Pteropus_vampyrus
ENSRNOG00000010125	Mtrex	97	81.609	ENSPNYG00000006164	mtrex	99	82.126	Pundamilia_nyererei
ENSRNOG00000010125	Mtrex	96	85.326	ENSPNAG00000008794	mtrex	98	85.326	Pygocentrus_nattereri
ENSRNOG00000010125	Mtrex	97	95.627	ENSRBIG00000034930	MTREX	99	95.627	Rhinopithecus_bieti
ENSRNOG00000010125	Mtrex	97	97.376	ENSRROG00000039895	MTREX	99	97.376	Rhinopithecus_roxellana
ENSRNOG00000010125	Mtrex	87	55.263	YJL050W	MTR4	88	55.263	Saccharomyces_cerevisiae
ENSRNOG00000010125	Mtrex	100	94.653	ENSSBOG00000026693	MTREX	99	97.085	Saimiri_boliviensis_boliviensis
ENSRNOG00000010125	Mtrex	92	94.512	ENSSHAG00000004600	MTREX	99	94.512	Sarcophilus_harrisii
ENSRNOG00000010125	Mtrex	97	87.222	ENSSFOG00015014355	skiv2l2	99	86.834	Scleropages_formosus
ENSRNOG00000010125	Mtrex	97	82.415	ENSSMAG00000007572	mtrex	99	82.143	Scophthalmus_maximus
ENSRNOG00000010125	Mtrex	97	82.899	ENSSDUG00000023789	mtrex	99	82.899	Seriola_dumerili
ENSRNOG00000010125	Mtrex	97	82.722	ENSSLDG00000006301	mtrex	99	82.722	Seriola_lalandi_dorsalis
ENSRNOG00000010125	Mtrex	97	93.780	ENSSARG00000008387	MTREX	99	93.780	Sorex_araneus
ENSRNOG00000010125	Mtrex	97	78.420	ENSSPUG00000007071	MTREX	99	78.215	Sphenodon_punctatus
ENSRNOG00000010125	Mtrex	97	81.021	ENSSPAG00000011319	mtrex	99	81.118	Stegastes_partitus
ENSRNOG00000010125	Mtrex	97	96.987	ENSSSCG00000016911	MTREX	99	96.987	Sus_scrofa
ENSRNOG00000010125	Mtrex	97	89.612	ENSTGUG00000002480	MTREX	99	89.612	Taeniopygia_guttata
ENSRNOG00000010125	Mtrex	97	82.546	ENSTRUG00000014571	mtrex	99	82.449	Takifugu_rubripes
ENSRNOG00000010125	Mtrex	97	81.147	ENSTBEG00000007769	MTREX	99	81.147	Tupaia_belangeri
ENSRNOG00000010125	Mtrex	97	96.501	ENSTTRG00000008678	MTREX	99	96.501	Tursiops_truncatus
ENSRNOG00000010125	Mtrex	97	96.793	ENSUAMG00000023061	MTREX	99	96.793	Ursus_americanus
ENSRNOG00000010125	Mtrex	97	96.217	ENSUMAG00000009373	MTREX	99	98.268	Ursus_maritimus
ENSRNOG00000010125	Mtrex	97	85.617	ENSVPAG00000011174	MTREX	99	85.617	Vicugna_pacos
ENSRNOG00000010125	Mtrex	97	97.182	ENSVVUG00000021337	MTREX	99	97.182	Vulpes_vulpes
ENSRNOG00000010125	Mtrex	97	87.899	ENSXETG00000032798	MTREX	99	87.899	Xenopus_tropicalis
ENSRNOG00000010125	Mtrex	97	82.785	ENSXMAG00000004799	mtrex	99	82.512	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	-	IEA	Component
GO:0000176	nuclear exosome (RNase complex)	-	ISO	Component
GO:0000178	exosome (RNase complex)	-	ISO	Component
GO:0000460	maturation of 5.8S rRNA	21873635.	IBA	Process
GO:0000460	maturation of 5.8S rRNA	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0031499	TRAMP complex	-	IEA	Component
GO:0031499	TRAMP complex	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	IEA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component