EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000010154 (Gene tree)
Gene ID: 296957
Gene Symbol: Zc3hc1
Alias: LOC296957|RGD1561099
Full Name: zinc finger%2C C3HC-type containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 21936 bases
Position: chr4:57684678-57706613
Accession: 1561099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000013606	zf-C3HC	PF07967.13	1.1e-33	1	1
ENSRNOP00000013606	Rsm1	PF08600.10	2.3e-16	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000013604	-	1824	-	ENSRNOP00000013606	502 (aa)	-	A0A140UHX2

Gene Model

Click here to download ENSRNOG00000010154's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000010154's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000010154	Zc3hc1	99	85.458	ENSG00000091732	ZC3HC1	99	85.458	Homo_sapiens
ENSRNOG00000010154	Zc3hc1	95	42.742	ENSAPOG00000009078	zc3hc1	95	42.540	Acanthochromis_polyacanthus
ENSRNOG00000010154	Zc3hc1	100	84.921	ENSAMEG00000005425	ZC3HC1	100	84.921	Ailuropoda_melanoleuca
ENSRNOG00000010154	Zc3hc1	95	40.964	ENSACIG00000019513	zc3hc1	95	40.763	Amphilophus_citrinellus
ENSRNOG00000010154	Zc3hc1	95	42.944	ENSAOCG00000024310	zc3hc1	95	42.944	Amphiprion_ocellaris
ENSRNOG00000010154	Zc3hc1	95	42.944	ENSAPEG00000004907	zc3hc1	95	42.944	Amphiprion_percula
ENSRNOG00000010154	Zc3hc1	81	45.412	ENSATEG00000016898	zc3hc1	85	45.433	Anabas_testudineus
ENSRNOG00000010154	Zc3hc1	88	57.848	ENSAPLG00000003832	ZC3HC1	99	57.848	Anas_platyrhynchos
ENSRNOG00000010154	Zc3hc1	95	59.470	ENSACAG00000001638	ZC3HC1	95	59.470	Anolis_carolinensis
ENSRNOG00000010154	Zc3hc1	100	84.294	ENSANAG00000022213	ZC3HC1	100	84.294	Aotus_nancymaae
ENSRNOG00000010154	Zc3hc1	88	42.094	ENSACLG00000025033	zc3hc1	98	41.880	Astatotilapia_calliptera
ENSRNOG00000010154	Zc3hc1	94	42.531	ENSAMXG00000036792	zc3hc1	97	42.531	Astyanax_mexicanus
ENSRNOG00000010154	Zc3hc1	100	85.288	ENSBTAG00000011247	ZC3HC1	100	85.288	Bos_taurus
ENSRNOG00000010154	Zc3hc1	100	83.499	ENSCJAG00000010536	ZC3HC1	100	83.499	Callithrix_jacchus
ENSRNOG00000010154	Zc3hc1	100	86.481	ENSCAFG00000029401	-	99	86.481	Canis_familiaris
ENSRNOG00000010154	Zc3hc1	100	86.879	ENSCAFG00000031850	-	100	86.879	Canis_familiaris
ENSRNOG00000010154	Zc3hc1	100	86.337	ENSCAFG00000001499	-	99	86.337	Canis_familiaris
ENSRNOG00000010154	Zc3hc1	100	86.481	ENSCAFG00000028735	-	100	86.481	Canis_familiaris
ENSRNOG00000010154	Zc3hc1	100	86.680	ENSCAFG00020006829	-	100	86.680	Canis_lupus_dingo
ENSRNOG00000010154	Zc3hc1	100	86.310	ENSCAFG00020023333	-	100	86.310	Canis_lupus_dingo
ENSRNOG00000010154	Zc3hc1	100	78.926	ENSCHIG00000014103	ZC3HC1	100	78.926	Capra_hircus
ENSRNOG00000010154	Zc3hc1	100	82.107	ENSTSYG00000002843	ZC3HC1	100	82.107	Carlito_syrichta
ENSRNOG00000010154	Zc3hc1	90	62.363	ENSCAPG00000016300	ZC3HC1	100	61.707	Cavia_aperea
ENSRNOG00000010154	Zc3hc1	100	80.119	ENSCPOG00000014034	ZC3HC1	100	79.523	Cavia_porcellus
ENSRNOG00000010154	Zc3hc1	100	67.992	ENSCCAG00000020384	ZC3HC1	100	85.022	Cebus_capucinus
ENSRNOG00000010154	Zc3hc1	100	85.686	ENSCATG00000023130	ZC3HC1	100	85.686	Cercocebus_atys
ENSRNOG00000010154	Zc3hc1	100	58.566	ENSCLAG00000008260	ZC3HC1	100	59.163	Chinchilla_lanigera
ENSRNOG00000010154	Zc3hc1	73	85.792	ENSCSAG00000009881	ZC3HC1	97	85.792	Chlorocebus_sabaeus
ENSRNOG00000010154	Zc3hc1	90	84.513	ENSCHOG00000011846	ZC3HC1	99	84.513	Choloepus_hoffmanni
ENSRNOG00000010154	Zc3hc1	96	64.476	ENSCPBG00000017519	ZC3HC1	97	64.476	Chrysemys_picta_bellii
ENSRNOG00000010154	Zc3hc1	100	85.288	ENSCANG00000029091	ZC3HC1	100	85.288	Colobus_angolensis_palliatus
ENSRNOG00000010154	Zc3hc1	100	90.637	ENSCGRG00001018805	Zc3hc1	100	90.637	Cricetulus_griseus_chok1gshd
ENSRNOG00000010154	Zc3hc1	100	90.438	ENSCGRG00000017114	Zc3hc1	100	90.438	Cricetulus_griseus_crigri
ENSRNOG00000010154	Zc3hc1	96	41.717	ENSCSEG00000009284	zc3hc1	94	41.916	Cynoglossus_semilaevis
ENSRNOG00000010154	Zc3hc1	94	41.296	ENSCVAG00000011566	zc3hc1	94	41.093	Cyprinodon_variegatus
ENSRNOG00000010154	Zc3hc1	95	46.122	ENSDARG00000062651	zc3hc1	95	46.122	Danio_rerio
ENSRNOG00000010154	Zc3hc1	100	83.499	ENSDNOG00000045016	ZC3HC1	100	83.499	Dasypus_novemcinctus
ENSRNOG00000010154	Zc3hc1	100	74.354	ENSDORG00000008697	Zc3hc1	100	74.354	Dipodomys_ordii
ENSRNOG00000010154	Zc3hc1	90	86.313	ENSEASG00005008789	ZC3HC1	97	86.313	Equus_asinus_asinus
ENSRNOG00000010154	Zc3hc1	100	84.524	ENSECAG00000017886	ZC3HC1	100	84.524	Equus_caballus
ENSRNOG00000010154	Zc3hc1	84	79.012	ENSEEUG00000003123	ZC3HC1	84	79.012	Erinaceus_europaeus
ENSRNOG00000010154	Zc3hc1	96	41.829	ENSELUG00000023168	zc3hc1	97	41.569	Esox_lucius
ENSRNOG00000010154	Zc3hc1	100	84.692	ENSFCAG00000010429	ZC3HC1	100	84.692	Felis_catus
ENSRNOG00000010154	Zc3hc1	90	57.602	ENSFALG00000005006	ZC3HC1	100	57.602	Ficedula_albicollis
ENSRNOG00000010154	Zc3hc1	100	81.511	ENSFDAG00000019897	ZC3HC1	100	81.511	Fukomys_damarensis
ENSRNOG00000010154	Zc3hc1	96	41.365	ENSFHEG00000020149	zc3hc1	96	40.808	Fundulus_heteroclitus
ENSRNOG00000010154	Zc3hc1	94	41.201	ENSGMOG00000002914	zc3hc1	95	40.695	Gadus_morhua
ENSRNOG00000010154	Zc3hc1	98	59.312	ENSGALG00000008003	ZC3HC1	99	59.312	Gallus_gallus
ENSRNOG00000010154	Zc3hc1	96	42.084	ENSGAFG00000016095	zc3hc1	96	41.884	Gambusia_affinis
ENSRNOG00000010154	Zc3hc1	94	43.210	ENSGACG00000019706	zc3hc1	94	43.238	Gasterosteus_aculeatus
ENSRNOG00000010154	Zc3hc1	77	65.482	ENSGAGG00000016106	ZC3HC1	100	65.482	Gopherus_agassizii
ENSRNOG00000010154	Zc3hc1	99	85.259	ENSGGOG00000015504	ZC3HC1	99	85.259	Gorilla_gorilla
ENSRNOG00000010154	Zc3hc1	94	41.429	ENSHBUG00000008347	zc3hc1	94	41.224	Haplochromis_burtoni
ENSRNOG00000010154	Zc3hc1	100	82.704	ENSHGLG00000005085	ZC3HC1	100	82.704	Heterocephalus_glaber_female
ENSRNOG00000010154	Zc3hc1	100	82.505	ENSHGLG00100011395	ZC3HC1	100	82.505	Heterocephalus_glaber_male
ENSRNOG00000010154	Zc3hc1	95	41.564	ENSHCOG00000014309	zc3hc1	95	42.916	Hippocampus_comes
ENSRNOG00000010154	Zc3hc1	100	84.095	ENSSTOG00000023599	-	100	84.095	Ictidomys_tridecemlineatus
ENSRNOG00000010154	Zc3hc1	94	42.653	ENSKMAG00000015315	zc3hc1	88	42.245	Kryptolebias_marmoratus
ENSRNOG00000010154	Zc3hc1	95	42.063	ENSLBEG00000017325	zc3hc1	95	42.063	Labrus_bergylta
ENSRNOG00000010154	Zc3hc1	79	53.641	ENSLACG00000013032	ZC3HC1	97	53.641	Latimeria_chalumnae
ENSRNOG00000010154	Zc3hc1	97	49.597	ENSLOCG00000015963	zc3hc1	97	50.101	Lepisosteus_oculatus
ENSRNOG00000010154	Zc3hc1	100	82.213	ENSLAFG00000001292	ZC3HC1	100	82.213	Loxodonta_africana
ENSRNOG00000010154	Zc3hc1	100	85.686	ENSMFAG00000030176	ZC3HC1	100	85.686	Macaca_fascicularis
ENSRNOG00000010154	Zc3hc1	100	85.487	ENSMMUG00000006155	ZC3HC1	100	85.487	Macaca_mulatta
ENSRNOG00000010154	Zc3hc1	100	85.885	ENSMNEG00000011833	ZC3HC1	100	85.885	Macaca_nemestrina
ENSRNOG00000010154	Zc3hc1	100	85.686	ENSMLEG00000027328	ZC3HC1	100	85.686	Mandrillus_leucophaeus
ENSRNOG00000010154	Zc3hc1	94	42.945	ENSMAMG00000010691	zc3hc1	95	42.771	Mastacembelus_armatus
ENSRNOG00000010154	Zc3hc1	94	41.224	ENSMZEG00005007142	zc3hc1	94	41.020	Maylandia_zebra
ENSRNOG00000010154	Zc3hc1	98	59.319	ENSMGAG00000002977	ZC3HC1	99	59.960	Meleagris_gallopavo
ENSRNOG00000010154	Zc3hc1	81	82.850	ENSMAUG00000017032	Zc3hc1	92	82.850	Mesocricetus_auratus
ENSRNOG00000010154	Zc3hc1	100	84.692	ENSMICG00000009167	ZC3HC1	100	84.692	Microcebus_murinus
ENSRNOG00000010154	Zc3hc1	100	89.243	ENSMOCG00000015239	Zc3hc1	100	89.243	Microtus_ochrogaster
ENSRNOG00000010154	Zc3hc1	85	41.818	ENSMMOG00000002204	zc3hc1	99	41.667	Mola_mola
ENSRNOG00000010154	Zc3hc1	98	62.573	ENSMODG00000014630	ZC3HC1	98	62.573	Monodelphis_domestica
ENSRNOG00000010154	Zc3hc1	94	42.073	ENSMALG00000014447	zc3hc1	95	42.137	Monopterus_albus
ENSRNOG00000010154	Zc3hc1	100	92.032	MGP_CAROLIEiJ_G0028183	Zc3hc1	100	92.032	Mus_caroli
ENSRNOG00000010154	Zc3hc1	100	92.629	ENSMUSG00000039130	Zc3hc1	100	92.629	Mus_musculus
ENSRNOG00000010154	Zc3hc1	100	85.458	MGP_PahariEiJ_G0021941	Zc3hc1	100	85.458	Mus_pahari
ENSRNOG00000010154	Zc3hc1	100	92.629	MGP_SPRETEiJ_G0029183	Zc3hc1	100	92.629	Mus_spretus
ENSRNOG00000010154	Zc3hc1	95	84.583	ENSMPUG00000005297	ZC3HC1	95	84.583	Mustela_putorius_furo
ENSRNOG00000010154	Zc3hc1	67	77.843	ENSMLUG00000029228	-	99	77.843	Myotis_lucifugus
ENSRNOG00000010154	Zc3hc1	100	83.762	ENSMLUG00000000063	-	100	83.762	Myotis_lucifugus
ENSRNOG00000010154	Zc3hc1	100	85.686	ENSNGAG00000019014	Zc3hc1	100	85.756	Nannospalax_galili
ENSRNOG00000010154	Zc3hc1	94	41.513	ENSNBRG00000004577	zc3hc1	94	41.309	Neolamprologus_brichardi
ENSRNOG00000010154	Zc3hc1	99	83.865	ENSNLEG00000012698	ZC3HC1	99	83.865	Nomascus_leucogenys
ENSRNOG00000010154	Zc3hc1	98	74.899	ENSMEUG00000011023	ZC3HC1	98	74.899	Notamacropus_eugenii
ENSRNOG00000010154	Zc3hc1	65	76.834	ENSOPRG00000007867	-	67	76.834	Ochotona_princeps
ENSRNOG00000010154	Zc3hc1	100	79.920	ENSODEG00000014604	ZC3HC1	100	79.324	Octodon_degus
ENSRNOG00000010154	Zc3hc1	94	41.837	ENSONIG00000011644	zc3hc1	94	41.633	Oreochromis_niloticus
ENSRNOG00000010154	Zc3hc1	90	65.517	ENSOANG00000011460	ZC3HC1	100	65.517	Ornithorhynchus_anatinus
ENSRNOG00000010154	Zc3hc1	100	80.792	ENSOCUG00000017137	ZC3HC1	100	80.792	Oryctolagus_cuniculus
ENSRNOG00000010154	Zc3hc1	95	42.308	ENSORLG00000014409	zc3hc1	94	42.308	Oryzias_latipes
ENSRNOG00000010154	Zc3hc1	95	42.105	ENSORLG00020015874	zc3hc1	94	42.105	Oryzias_latipes_hni
ENSRNOG00000010154	Zc3hc1	95	41.903	ENSORLG00015014641	zc3hc1	94	41.903	Oryzias_latipes_hsok
ENSRNOG00000010154	Zc3hc1	95	43.361	ENSOMEG00000000215	zc3hc1	95	43.326	Oryzias_melastigma
ENSRNOG00000010154	Zc3hc1	95	42.946	ENSOMEG00000020604	zc3hc1	95	42.916	Oryzias_melastigma
ENSRNOG00000010154	Zc3hc1	100	79.324	ENSOGAG00000026193	ZC3HC1	100	79.324	Otolemur_garnettii
ENSRNOG00000010154	Zc3hc1	100	85.347	ENSOARG00000004907	ZC3HC1	99	85.347	Ovis_aries
ENSRNOG00000010154	Zc3hc1	99	85.458	ENSPPAG00000043172	ZC3HC1	99	85.458	Pan_paniscus
ENSRNOG00000010154	Zc3hc1	100	83.897	ENSPPRG00000001004	ZC3HC1	100	83.897	Panthera_pardus
ENSRNOG00000010154	Zc3hc1	100	84.493	ENSPTIG00000007823	ZC3HC1	100	84.493	Panthera_tigris_altaica
ENSRNOG00000010154	Zc3hc1	99	85.060	ENSPTRG00000019685	ZC3HC1	99	85.060	Pan_troglodytes
ENSRNOG00000010154	Zc3hc1	100	85.288	ENSPANG00000014229	ZC3HC1	100	85.288	Papio_anubis
ENSRNOG00000010154	Zc3hc1	95	46.266	ENSPKIG00000007172	zc3hc1	95	46.266	Paramormyrops_kingsleyae
ENSRNOG00000010154	Zc3hc1	93	59.414	ENSPSIG00000016646	ZC3HC1	100	57.004	Pelodiscus_sinensis
ENSRNOG00000010154	Zc3hc1	90	39.615	ENSPMGG00000003548	zc3hc1	95	39.192	Periophthalmus_magnuspinnatus
ENSRNOG00000010154	Zc3hc1	100	89.841	ENSPEMG00000000514	Zc3hc1	100	89.841	Peromyscus_maniculatus_bairdii
ENSRNOG00000010154	Zc3hc1	99	71.713	ENSPCIG00000020619	ZC3HC1	100	74.807	Phascolarctos_cinereus
ENSRNOG00000010154	Zc3hc1	96	41.884	ENSPFOG00000003466	zc3hc1	96	41.683	Poecilia_formosa
ENSRNOG00000010154	Zc3hc1	96	41.434	ENSPLAG00000022211	zc3hc1	96	41.235	Poecilia_latipinna
ENSRNOG00000010154	Zc3hc1	96	41.884	ENSPMEG00000001458	zc3hc1	96	41.683	Poecilia_mexicana
ENSRNOG00000010154	Zc3hc1	96	41.683	ENSPREG00000004004	zc3hc1	96	41.483	Poecilia_reticulata
ENSRNOG00000010154	Zc3hc1	99	78.373	ENSPPYG00000017998	ZC3HC1	99	78.373	Pongo_abelii
ENSRNOG00000010154	Zc3hc1	92	79.610	ENSPCAG00000001182	ZC3HC1	100	79.610	Procavia_capensis
ENSRNOG00000010154	Zc3hc1	100	84.891	ENSPCOG00000017354	ZC3HC1	100	84.891	Propithecus_coquereli
ENSRNOG00000010154	Zc3hc1	100	79.722	ENSPVAG00000003195	ZC3HC1	100	80.716	Pteropus_vampyrus
ENSRNOG00000010154	Zc3hc1	94	41.224	ENSPNYG00000020692	zc3hc1	94	41.020	Pundamilia_nyererei
ENSRNOG00000010154	Zc3hc1	93	43.816	ENSPNAG00000020746	zc3hc1	95	43.816	Pygocentrus_nattereri
ENSRNOG00000010154	Zc3hc1	90	86.123	ENSRBIG00000029409	ZC3HC1	100	86.123	Rhinopithecus_bieti
ENSRNOG00000010154	Zc3hc1	100	85.288	ENSRROG00000041831	ZC3HC1	100	85.288	Rhinopithecus_roxellana
ENSRNOG00000010154	Zc3hc1	93	74.561	ENSSBOG00000032787	ZC3HC1	96	86.500	Saimiri_boliviensis_boliviensis
ENSRNOG00000010154	Zc3hc1	92	74.839	ENSSHAG00000002529	ZC3HC1	100	74.839	Sarcophilus_harrisii
ENSRNOG00000010154	Zc3hc1	95	47.531	ENSSFOG00015003667	zc3hc1	91	47.325	Scleropages_formosus
ENSRNOG00000010154	Zc3hc1	95	41.283	ENSSMAG00000000647	zc3hc1	86	41.400	Scophthalmus_maximus
ENSRNOG00000010154	Zc3hc1	95	43.089	ENSSDUG00000004241	zc3hc1	93	43.117	Seriola_dumerili
ENSRNOG00000010154	Zc3hc1	95	42.886	ENSSLDG00000025056	zc3hc1	93	42.915	Seriola_lalandi_dorsalis
ENSRNOG00000010154	Zc3hc1	99	74.502	ENSSARG00000012013	ZC3HC1	99	74.502	Sorex_araneus
ENSRNOG00000010154	Zc3hc1	86	57.241	ENSSPUG00000000778	ZC3HC1	86	57.241	Sphenodon_punctatus
ENSRNOG00000010154	Zc3hc1	95	43.145	ENSSPAG00000020041	zc3hc1	95	42.944	Stegastes_partitus
ENSRNOG00000010154	Zc3hc1	100	84.294	ENSSSCG00000016565	ZC3HC1	100	84.833	Sus_scrofa
ENSRNOG00000010154	Zc3hc1	95	40.891	ENSTRUG00000020077	zc3hc1	95	40.891	Takifugu_rubripes
ENSRNOG00000010154	Zc3hc1	95	41.104	ENSTNIG00000007585	zc3hc1	99	41.273	Tetraodon_nigroviridis
ENSRNOG00000010154	Zc3hc1	89	83.791	ENSTBEG00000005216	ZC3HC1	90	83.791	Tupaia_belangeri
ENSRNOG00000010154	Zc3hc1	95	84.615	ENSTTRG00000008458	ZC3HC1	100	84.615	Tursiops_truncatus
ENSRNOG00000010154	Zc3hc1	100	85.487	ENSUAMG00000020249	ZC3HC1	100	85.487	Ursus_americanus
ENSRNOG00000010154	Zc3hc1	100	84.891	ENSUMAG00000009268	ZC3HC1	100	84.891	Ursus_maritimus
ENSRNOG00000010154	Zc3hc1	77	89.796	ENSVPAG00000010846	ZC3HC1	77	89.796	Vicugna_pacos
ENSRNOG00000010154	Zc3hc1	96	85.655	ENSVVUG00000012386	ZC3HC1	99	85.655	Vulpes_vulpes
ENSRNOG00000010154	Zc3hc1	91	51.828	ENSXETG00000033900	zc3hc1	95	51.828	Xenopus_tropicalis
ENSRNOG00000010154	Zc3hc1	96	41.717	ENSXCOG00000013570	zc3hc1	96	41.517	Xiphophorus_couchianus
ENSRNOG00000010154	Zc3hc1	88	42.581	ENSXMAG00000010979	zc3hc1	95	42.366	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0019901	protein kinase binding	-	IEA	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0031965	nuclear membrane	-	IEA	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:2001240	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	-	IEA	Process
GO:2001240	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	-	ISO	Process