EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000010379 (Gene tree)
Gene ID: 362160
Gene Symbol: Celf1
Alias: CELF-1|CUG-BP1|Cugbp1|LOC362160
Full Name: CUGBP%2C Elav-like family member 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 18138 bases
Position: chr3:79823945-79842082
Accession: 1307721
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000014484	RRM_1	PF00076.22	2.3e-52	1	3
ENSRNOP00000014484	RRM_1	PF00076.22	2.3e-52	2	3
ENSRNOP00000014484	RRM_1	PF00076.22	2.3e-52	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000014484	-	1998	XM_006234513	ENSRNOP00000014484	487 (aa)	XP_006234575	Q4QQT3

Gene Model

Click here to download ENSRNOG00000010379's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000010379's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000010379	Celf1	61	45.679	ENSRNOG00000001069	Elavl1	81	45.679
ENSRNOG00000010379	Celf1	61	40.741	ENSRNOG00000023601	Elavl4	72	40.741
ENSRNOG00000010379	Celf1	57	43.590	ENSRNOG00000013752	Elavl3	71	42.391
ENSRNOG00000010379	Celf1	100	79.226	ENSRNOG00000023661	Celf2	94	78.819
ENSRNOG00000010379	Celf1	70	38.636	ENSRNOG00000015642	Pabpc4	51	38.636
ENSRNOG00000010379	Celf1	69	41.975	ENSRNOG00000006853	Elavl2	79	41.975
ENSRNOG00000010379	Celf1	52	35.526	ENSRNOG00000017367	Pabpc6	53	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000010379	Celf1	100	99.384	ENSG00000149187	CELF1	100	99.179	Homo_sapiens
ENSRNOG00000010379	Celf1	100	84.787	ENSAPOG00000024000	celf1	100	84.787	Acanthochromis_polyacanthus
ENSRNOG00000010379	Celf1	100	98.563	ENSAMEG00000007596	CELF1	95	98.563	Ailuropoda_melanoleuca
ENSRNOG00000010379	Celf1	100	82.582	ENSACIG00000023843	celf1	100	81.557	Amphilophus_citrinellus
ENSRNOG00000010379	Celf1	100	84.787	ENSAOCG00000001252	celf1	100	84.787	Amphiprion_ocellaris
ENSRNOG00000010379	Celf1	100	84.990	ENSAPEG00000002340	celf1	97	84.990	Amphiprion_percula
ENSRNOG00000010379	Celf1	100	82.172	ENSATEG00000010871	celf1	100	81.557	Anabas_testudineus
ENSRNOG00000010379	Celf1	100	94.274	ENSACAG00000002114	CELF1	95	93.634	Anolis_carolinensis
ENSRNOG00000010379	Celf1	100	99.179	ENSANAG00000031770	CELF1	95	99.179	Aotus_nancymaae
ENSRNOG00000010379	Celf1	100	84.016	ENSACLG00000010181	-	100	80.533	Astatotilapia_calliptera
ENSRNOG00000010379	Celf1	100	82.738	ENSAMXG00000020576	celf1	93	82.341	Astyanax_mexicanus
ENSRNOG00000010379	Celf1	100	97.947	ENSBTAG00000002520	CELF1	100	97.947	Bos_taurus
ENSRNOG00000010379	Celf1	100	99.384	ENSCJAG00000020133	CELF1	95	99.384	Callithrix_jacchus
ENSRNOG00000010379	Celf1	100	98.768	ENSCAFG00000008452	CELF1	95	98.768	Canis_familiaris
ENSRNOG00000010379	Celf1	100	98.768	ENSCAFG00020025487	CELF1	100	94.082	Canis_lupus_dingo
ENSRNOG00000010379	Celf1	100	98.152	ENSCHIG00000024582	CELF1	95	98.152	Capra_hircus
ENSRNOG00000010379	Celf1	100	99.179	ENSTSYG00000003866	CELF1	100	99.179	Carlito_syrichta
ENSRNOG00000010379	Celf1	99	72.141	ENSCAPG00000006787	CELF1	94	71.726	Cavia_aperea
ENSRNOG00000010379	Celf1	100	99.179	ENSCPOG00000036381	CELF1	100	99.179	Cavia_porcellus
ENSRNOG00000010379	Celf1	100	99.384	ENSCCAG00000033487	CELF1	100	99.179	Cebus_capucinus
ENSRNOG00000010379	Celf1	100	99.384	ENSCATG00000040143	CELF1	100	99.384	Cercocebus_atys
ENSRNOG00000010379	Celf1	100	99.179	ENSCLAG00000011791	CELF1	100	95.072	Chinchilla_lanigera
ENSRNOG00000010379	Celf1	100	98.973	ENSCSAG00000005786	CELF1	95	98.973	Chlorocebus_sabaeus
ENSRNOG00000010379	Celf1	62	100.000	ENSCHOG00000004196	-	68	100.000	Choloepus_hoffmanni
ENSRNOG00000010379	Celf1	100	96.115	ENSCPBG00000022914	CELF1	100	96.115	Chrysemys_picta_bellii
ENSRNOG00000010379	Celf1	100	98.973	ENSCANG00000032689	CELF1	100	98.563	Colobus_angolensis_palliatus
ENSRNOG00000010379	Celf1	100	99.384	ENSCGRG00001011274	Celf1	95	99.384	Cricetulus_griseus_chok1gshd
ENSRNOG00000010379	Celf1	100	99.384	ENSCGRG00000015357	Celf1	95	99.384	Cricetulus_griseus_crigri
ENSRNOG00000010379	Celf1	100	74.180	ENSCSEG00000008675	celf1	100	73.156	Cynoglossus_semilaevis
ENSRNOG00000010379	Celf1	100	83.564	ENSDARG00000005315	celf1	100	88.166	Danio_rerio
ENSRNOG00000010379	Celf1	100	99.384	ENSDNOG00000009523	CELF1	100	99.384	Dasypus_novemcinctus
ENSRNOG00000010379	Celf1	100	87.680	ENSDORG00000013721	Celf1	96	87.680	Dipodomys_ordii
ENSRNOG00000010379	Celf1	73	100.000	ENSETEG00000004507	CELF1	83	100.000	Echinops_telfairi
ENSRNOG00000010379	Celf1	100	91.170	ENSEASG00005010831	CELF1	94	91.170	Equus_asinus_asinus
ENSRNOG00000010379	Celf1	100	98.768	ENSECAG00000007741	CELF1	100	97.947	Equus_caballus
ENSRNOG00000010379	Celf1	100	80.287	ENSEEUG00000009782	CELF1	100	80.698	Erinaceus_europaeus
ENSRNOG00000010379	Celf1	100	83.532	ENSELUG00000023173	celf1	100	82.738	Esox_lucius
ENSRNOG00000010379	Celf1	100	98.768	ENSFCAG00000002535	CELF1	100	98.768	Felis_catus
ENSRNOG00000010379	Celf1	100	94.888	ENSFALG00000006402	CELF1	95	94.661	Ficedula_albicollis
ENSRNOG00000010379	Celf1	100	98.973	ENSFDAG00000008517	CELF1	100	98.973	Fukomys_damarensis
ENSRNOG00000010379	Celf1	100	83.061	ENSGMOG00000012783	celf1	98	82.653	Gadus_morhua
ENSRNOG00000010379	Celf1	100	95.297	ENSGALG00000008097	CELF1	100	95.072	Gallus_gallus
ENSRNOG00000010379	Celf1	100	78.175	ENSGACG00000014226	celf1	94	78.175	Gasterosteus_aculeatus
ENSRNOG00000010379	Celf1	100	95.297	ENSGAGG00000011562	CELF1	100	93.840	Gopherus_agassizii
ENSRNOG00000010379	Celf1	100	99.384	ENSGGOG00000004106	CELF1	95	99.384	Gorilla_gorilla
ENSRNOG00000010379	Celf1	100	84.016	ENSHBUG00000017881	celf1	95	84.426	Haplochromis_burtoni
ENSRNOG00000010379	Celf1	100	90.574	ENSHGLG00000019214	-	100	90.164	Heterocephalus_glaber_female
ENSRNOG00000010379	Celf1	100	99.179	ENSHGLG00000006909	-	100	99.179	Heterocephalus_glaber_female
ENSRNOG00000010379	Celf1	100	99.179	ENSHGLG00100013863	-	100	99.179	Heterocephalus_glaber_male
ENSRNOG00000010379	Celf1	100	93.238	ENSHGLG00100017423	-	100	93.238	Heterocephalus_glaber_male
ENSRNOG00000010379	Celf1	100	84.254	ENSHCOG00000000258	celf1	100	84.049	Hippocampus_comes
ENSRNOG00000010379	Celf1	100	82.574	ENSIPUG00000023708	celf1	100	81.584	Ictalurus_punctatus
ENSRNOG00000010379	Celf1	100	99.384	ENSSTOG00000000613	CELF1	100	99.384	Ictidomys_tridecemlineatus
ENSRNOG00000010379	Celf1	100	98.768	ENSJJAG00000020280	Celf1	95	98.768	Jaculus_jaculus
ENSRNOG00000010379	Celf1	100	85.451	ENSLBEG00000018296	celf1	93	84.646	Labrus_bergylta
ENSRNOG00000010379	Celf1	70	84.706	ENSLBEG00000002047	-	98	82.353	Labrus_bergylta
ENSRNOG00000010379	Celf1	69	80.059	ENSLACG00000018990	CELF1	85	80.059	Latimeria_chalumnae
ENSRNOG00000010379	Celf1	100	87.052	ENSLOCG00000005966	celf1	94	86.653	Lepisosteus_oculatus
ENSRNOG00000010379	Celf1	100	98.768	ENSLAFG00000003484	CELF1	95	98.768	Loxodonta_africana
ENSRNOG00000010379	Celf1	100	99.384	ENSMFAG00000003505	CELF1	100	99.384	Macaca_fascicularis
ENSRNOG00000010379	Celf1	100	98.973	ENSMMUG00000011657	CELF1	99	98.563	Macaca_mulatta
ENSRNOG00000010379	Celf1	100	99.384	ENSMNEG00000022558	CELF1	100	99.384	Macaca_nemestrina
ENSRNOG00000010379	Celf1	100	99.179	ENSMLEG00000040834	CELF1	100	98.563	Mandrillus_leucophaeus
ENSRNOG00000010379	Celf1	100	83.197	ENSMAMG00000010052	celf1	100	82.172	Mastacembelus_armatus
ENSRNOG00000010379	Celf1	100	84.016	ENSMZEG00005018307	celf1	100	80.533	Maylandia_zebra
ENSRNOG00000010379	Celf1	100	94.898	ENSMGAG00000010629	CELF1	96	93.238	Meleagris_gallopavo
ENSRNOG00000010379	Celf1	100	99.589	ENSMAUG00000009468	Celf1	100	99.589	Mesocricetus_auratus
ENSRNOG00000010379	Celf1	100	99.384	ENSMICG00000045113	CELF1	95	99.384	Microcebus_murinus
ENSRNOG00000010379	Celf1	100	99.795	ENSMOCG00000012633	Celf1	100	99.795	Microtus_ochrogaster
ENSRNOG00000010379	Celf1	100	82.377	ENSMMOG00000015460	celf1	95	81.967	Mola_mola
ENSRNOG00000010379	Celf1	100	97.536	ENSMODG00000019913	CELF1	100	97.536	Monodelphis_domestica
ENSRNOG00000010379	Celf1	100	99.795	MGP_CAROLIEiJ_G0023949	Celf1	100	99.795	Mus_caroli
ENSRNOG00000010379	Celf1	100	99.795	ENSMUSG00000005506	Celf1	100	99.795	Mus_musculus
ENSRNOG00000010379	Celf1	100	99.795	MGP_PahariEiJ_G0025385	Celf1	100	99.795	Mus_pahari
ENSRNOG00000010379	Celf1	100	99.589	MGP_SPRETEiJ_G0024859	Celf1	100	99.589	Mus_spretus
ENSRNOG00000010379	Celf1	100	98.768	ENSMPUG00000003960	CELF1	88	98.768	Mustela_putorius_furo
ENSRNOG00000010379	Celf1	100	98.163	ENSMLUG00000016631	CELF1	95	98.163	Myotis_lucifugus
ENSRNOG00000010379	Celf1	100	97.536	ENSNGAG00000017390	Celf1	95	97.536	Nannospalax_galili
ENSRNOG00000010379	Celf1	99	55.350	ENSNBRG00000023547	-	85	55.350	Neolamprologus_brichardi
ENSRNOG00000010379	Celf1	100	98.973	ENSNLEG00000014638	CELF1	100	98.563	Nomascus_leucogenys
ENSRNOG00000010379	Celf1	100	97.331	ENSMEUG00000007763	CELF1	100	97.331	Notamacropus_eugenii
ENSRNOG00000010379	Celf1	100	98.357	ENSOPRG00000003239	-	100	98.357	Ochotona_princeps
ENSRNOG00000010379	Celf1	100	99.179	ENSODEG00000015204	CELF1	95	99.179	Octodon_degus
ENSRNOG00000010379	Celf1	100	83.402	ENSONIG00000008300	celf1	95	82.209	Oreochromis_niloticus
ENSRNOG00000010379	Celf1	100	97.947	ENSOANG00000007896	CELF1	94	97.947	Ornithorhynchus_anatinus
ENSRNOG00000010379	Celf1	100	98.768	ENSOCUG00000001311	CELF1	95	98.768	Oryctolagus_cuniculus
ENSRNOG00000010379	Celf1	100	78.776	ENSOMEG00000002381	celf1	100	78.980	Oryzias_melastigma
ENSRNOG00000010379	Celf1	100	98.367	ENSOGAG00000011600	CELF1	95	98.367	Otolemur_garnettii
ENSRNOG00000010379	Celf1	100	98.152	ENSOARG00000006924	CELF1	100	98.152	Ovis_aries
ENSRNOG00000010379	Celf1	100	99.384	ENSPPAG00000033870	CELF1	100	99.384	Pan_paniscus
ENSRNOG00000010379	Celf1	100	98.768	ENSPPRG00000002376	CELF1	100	98.768	Panthera_pardus
ENSRNOG00000010379	Celf1	100	98.768	ENSPTIG00000003974	CELF1	100	98.768	Panthera_tigris_altaica
ENSRNOG00000010379	Celf1	100	99.384	ENSPTRG00000052299	CELF1	100	99.384	Pan_troglodytes
ENSRNOG00000010379	Celf1	100	99.384	ENSPANG00000021676	CELF1	95	99.384	Papio_anubis
ENSRNOG00000010379	Celf1	100	87.090	ENSPKIG00000012324	celf1	100	86.270	Paramormyrops_kingsleyae
ENSRNOG00000010379	Celf1	100	94.070	ENSPSIG00000003922	CELF1	95	94.070	Pelodiscus_sinensis
ENSRNOG00000010379	Celf1	100	86.522	ENSPMGG00000013192	celf1	95	76.434	Periophthalmus_magnuspinnatus
ENSRNOG00000010379	Celf1	100	99.795	ENSPEMG00000015644	Celf1	100	99.795	Peromyscus_maniculatus_bairdii
ENSRNOG00000010379	Celf1	100	97.536	ENSPCIG00000022947	CELF1	97	97.536	Phascolarctos_cinereus
ENSRNOG00000010379	Celf1	70	69.912	ENSPFOG00000000961	-	100	66.667	Poecilia_formosa
ENSRNOG00000010379	Celf1	88	70.262	ENSPLAG00000019373	-	82	70.058	Poecilia_latipinna
ENSRNOG00000010379	Celf1	100	74.233	ENSPREG00000022185	-	94	71.458	Poecilia_reticulata
ENSRNOG00000010379	Celf1	100	98.156	ENSPPYG00000003302	CELF1	95	98.156	Pongo_abelii
ENSRNOG00000010379	Celf1	100	97.331	ENSPCAG00000002631	CELF1	100	97.331	Procavia_capensis
ENSRNOG00000010379	Celf1	100	94.661	ENSPCOG00000021865	CELF1	95	94.661	Propithecus_coquereli
ENSRNOG00000010379	Celf1	97	98.829	ENSPVAG00000007340	CELF1	100	98.829	Pteropus_vampyrus
ENSRNOG00000010379	Celf1	78	73.156	ENSPNYG00000023719	-	88	71.386	Pundamilia_nyererei
ENSRNOG00000010379	Celf1	100	83.168	ENSPNAG00000013418	celf1	93	83.168	Pygocentrus_nattereri
ENSRNOG00000010379	Celf1	100	99.384	ENSRBIG00000042406	CELF1	95	99.384	Rhinopithecus_bieti
ENSRNOG00000010379	Celf1	100	99.179	ENSRROG00000032588	CELF1	95	99.179	Rhinopithecus_roxellana
ENSRNOG00000010379	Celf1	100	87.885	ENSSBOG00000021912	CELF1	94	87.885	Saimiri_boliviensis_boliviensis
ENSRNOG00000010379	Celf1	100	97.947	ENSSHAG00000017438	CELF1	100	97.947	Sarcophilus_harrisii
ENSRNOG00000010379	Celf1	100	88.115	ENSSFOG00015019353	celf1	93	87.705	Scleropages_formosus
ENSRNOG00000010379	Celf1	100	84.867	ENSSMAG00000013827	celf1	93	85.276	Scophthalmus_maximus
ENSRNOG00000010379	Celf1	100	84.663	ENSSDUG00000011558	celf1	93	85.072	Seriola_dumerili
ENSRNOG00000010379	Celf1	100	84.867	ENSSLDG00000012863	celf1	95	85.276	Seriola_lalandi_dorsalis
ENSRNOG00000010379	Celf1	100	92.402	ENSSARG00000003207	CELF1	100	92.197	Sorex_araneus
ENSRNOG00000010379	Celf1	100	95.910	ENSSPUG00000004228	CELF1	95	95.910	Sphenodon_punctatus
ENSRNOG00000010379	Celf1	100	84.787	ENSSPAG00000009569	celf1	100	84.787	Stegastes_partitus
ENSRNOG00000010379	Celf1	100	98.768	ENSSSCG00000013233	CELF1	100	98.768	Sus_scrofa
ENSRNOG00000010379	Celf1	100	94.888	ENSTGUG00000010377	CELF1	95	95.297	Taeniopygia_guttata
ENSRNOG00000010379	Celf1	100	65.714	ENSTRUG00000000617	celf1	100	66.122	Takifugu_rubripes
ENSRNOG00000010379	Celf1	83	99.338	ENSTBEG00000005140	CELF1	83	99.338	Tupaia_belangeri
ENSRNOG00000010379	Celf1	100	98.768	ENSTTRG00000014157	CELF1	100	98.768	Tursiops_truncatus
ENSRNOG00000010379	Celf1	90	98.627	ENSUAMG00000000223	CELF1	94	98.627	Ursus_americanus
ENSRNOG00000010379	Celf1	100	98.768	ENSUMAG00000009218	CELF1	95	98.768	Ursus_maritimus
ENSRNOG00000010379	Celf1	100	85.216	ENSVPAG00000000336	CELF1	100	85.216	Vicugna_pacos
ENSRNOG00000010379	Celf1	100	98.768	ENSVVUG00000023439	CELF1	100	98.768	Vulpes_vulpes
ENSRNOG00000010379	Celf1	100	87.726	ENSXETG00000009044	celf1	100	87.123	Xenopus_tropicalis
ENSRNOG00000010379	Celf1	87	60.000	ENSXCOG00000017706	-	87	59.942	Xiphophorus_couchianus
ENSRNOG00000010379	Celf1	100	72.746	ENSXMAG00000029339	-	100	71.516	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006376	mRNA splice site selection	21873635.	IBA	Process
GO:0006376	mRNA splice site selection	-	ISO	Process
GO:0007286	spermatid development	-	IEA	Process
GO:0007286	spermatid development	-	ISO	Process
GO:0031369	translation initiation factor binding	-	IEA	Function
GO:0031369	translation initiation factor binding	-	ISO	Function
GO:0036002	pre-mRNA binding	-	ISO	Function
GO:0040018	positive regulation of multicellular organism growth	-	IEA	Process
GO:0040018	positive regulation of multicellular organism growth	-	ISO	Process
GO:0042835	BRE binding	-	ISO	Function
GO:0043484	regulation of RNA splicing	-	ISO	Process
GO:0043484	regulation of RNA splicing	-	ISS	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component