EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000010587 (Gene tree)
Gene ID: 102548514
Gene Symbol: Crnkl1
Alias: Crn|LOC100360434|LOC100910202|MGC93283
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 14883 bases
Position: chr3:140126797-140141679
Accession: 620507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000014632	HAT	PF02184.16	1.4e-39	1	2
ENSRNOP00000014632	HAT	PF02184.16	1.4e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000014632	-	2326	XM_006235165	ENSRNOP00000014632	690 (aa)	XP_006235227	P63155

Gene Model

Click here to download ENSRNOG00000010587's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000010587's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000010587	Crnkl1	100	99.565	ENSRNOG00000040045	Crnkl1	100	99.565

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000010587	Crnkl1	99	96.361	ENSG00000101343	CRNKL1	100	96.361	Homo_sapiens
ENSRNOG00000010587	Crnkl1	99	86.152	ENSAPOG00000009705	crnkl1	97	86.074	Acanthochromis_polyacanthus
ENSRNOG00000010587	Crnkl1	99	98.690	ENSAMEG00000000270	CRNKL1	83	98.690	Ailuropoda_melanoleuca
ENSRNOG00000010587	Crnkl1	98	86.202	ENSACIG00000015267	crnkl1	89	86.202	Amphilophus_citrinellus
ENSRNOG00000010587	Crnkl1	99	86.297	ENSAOCG00000021964	crnkl1	91	86.297	Amphiprion_ocellaris
ENSRNOG00000010587	Crnkl1	99	86.026	ENSAPEG00000015041	crnkl1	91	86.026	Amphiprion_percula
ENSRNOG00000010587	Crnkl1	99	85.320	ENSATEG00000001068	crnkl1	89	86.176	Anabas_testudineus
ENSRNOG00000010587	Crnkl1	99	90.247	ENSAPLG00000013105	CRNKL1	99	90.247	Anas_platyrhynchos
ENSRNOG00000010587	Crnkl1	99	92.679	ENSACAG00000005284	CRNKL1	99	92.679	Anolis_carolinensis
ENSRNOG00000010587	Crnkl1	92	96.994	ENSANAG00000024889	CRNKL1	100	96.994	Aotus_nancymaae
ENSRNOG00000010587	Crnkl1	99	86.172	ENSACLG00000010813	crnkl1	91	86.172	Astatotilapia_calliptera
ENSRNOG00000010587	Crnkl1	96	87.651	ENSAMXG00000018334	crnkl1	93	85.590	Astyanax_mexicanus
ENSRNOG00000010587	Crnkl1	99	96.948	ENSBTAG00000008472	CRNKL1	99	96.948	Bos_taurus
ENSRNOG00000010587	Crnkl1	93	61.957	WBGene00019762	M03F8.3	93	60.776	Caenorhabditis_elegans
ENSRNOG00000010587	Crnkl1	99	96.215	ENSCJAG00000005393	CRNKL1	100	96.215	Callithrix_jacchus
ENSRNOG00000010587	Crnkl1	99	98.399	ENSCAFG00000005333	CRNKL1	94	98.399	Canis_familiaris
ENSRNOG00000010587	Crnkl1	99	98.399	ENSCAFG00020027488	CRNKL1	100	98.399	Canis_lupus_dingo
ENSRNOG00000010587	Crnkl1	99	96.221	ENSCHIG00000013171	CRNKL1	99	96.221	Capra_hircus
ENSRNOG00000010587	Crnkl1	99	97.234	ENSTSYG00000004197	CRNKL1	100	97.234	Carlito_syrichta
ENSRNOG00000010587	Crnkl1	95	96.774	ENSCAPG00000010501	CRNKL1	99	96.774	Cavia_aperea
ENSRNOG00000010587	Crnkl1	99	96.943	ENSCPOG00000004418	CRNKL1	100	96.943	Cavia_porcellus
ENSRNOG00000010587	Crnkl1	99	96.215	ENSCCAG00000027037	CRNKL1	100	96.215	Cebus_capucinus
ENSRNOG00000010587	Crnkl1	99	96.361	ENSCATG00000034247	CRNKL1	100	96.361	Cercocebus_atys
ENSRNOG00000010587	Crnkl1	99	97.671	ENSCLAG00000013859	CRNKL1	100	97.671	Chinchilla_lanigera
ENSRNOG00000010587	Crnkl1	99	96.361	ENSCSAG00000011434	CRNKL1	100	96.361	Chlorocebus_sabaeus
ENSRNOG00000010587	Crnkl1	99	97.817	ENSCHOG00000006371	CRNKL1	84	97.817	Choloepus_hoffmanni
ENSRNOG00000010587	Crnkl1	99	94.015	ENSCPBG00000023501	CRNKL1	99	94.015	Chrysemys_picta_bellii
ENSRNOG00000010587	Crnkl1	96	69.335	ENSCING00000002709	-	99	67.690	Ciona_intestinalis
ENSRNOG00000010587	Crnkl1	99	96.507	ENSCANG00000038789	CRNKL1	100	96.507	Colobus_angolensis_palliatus
ENSRNOG00000010587	Crnkl1	100	99.130	ENSCGRG00001001115	-	100	99.130	Cricetulus_griseus_chok1gshd
ENSRNOG00000010587	Crnkl1	100	99.130	ENSCGRG00001000687	-	100	99.130	Cricetulus_griseus_chok1gshd
ENSRNOG00000010587	Crnkl1	100	99.130	ENSCGRG00000007854	Crnkl1	100	99.130	Cricetulus_griseus_crigri
ENSRNOG00000010587	Crnkl1	98	85.926	ENSCSEG00000005594	crnkl1	87	84.862	Cynoglossus_semilaevis
ENSRNOG00000010587	Crnkl1	97	87.237	ENSCVAG00000015172	crnkl1	92	85.298	Cyprinodon_variegatus
ENSRNOG00000010587	Crnkl1	96	86.707	ENSDARG00000007901	crnkl1	90	85.380	Danio_rerio
ENSRNOG00000010587	Crnkl1	99	98.246	ENSDNOG00000016226	CRNKL1	95	98.246	Dasypus_novemcinctus
ENSRNOG00000010587	Crnkl1	97	88.955	ENSDORG00000023724	-	99	88.955	Dipodomys_ordii
ENSRNOG00000010587	Crnkl1	99	96.825	ENSDORG00000000394	-	100	96.825	Dipodomys_ordii
ENSRNOG00000010587	Crnkl1	97	88.358	ENSDORG00000030174	-	99	88.358	Dipodomys_ordii
ENSRNOG00000010587	Crnkl1	96	69.219	FBgn0000377	crn	95	69.219	Drosophila_melanogaster
ENSRNOG00000010587	Crnkl1	99	85.153	ENSETEG00000003711	CRNKL1	84	85.153	Echinops_telfairi
ENSRNOG00000010587	Crnkl1	99	61.155	ENSEBUG00000013461	crnkl1	96	58.419	Eptatretus_burgeri
ENSRNOG00000010587	Crnkl1	99	98.399	ENSEASG00005002072	CRNKL1	100	98.399	Equus_asinus_asinus
ENSRNOG00000010587	Crnkl1	99	98.399	ENSECAG00000022215	CRNKL1	100	98.399	Equus_caballus
ENSRNOG00000010587	Crnkl1	99	95.147	ENSEEUG00000000413	CRNKL1	92	95.197	Erinaceus_europaeus
ENSRNOG00000010587	Crnkl1	97	85.479	ENSELUG00000015424	crnkl1	97	84.064	Esox_lucius
ENSRNOG00000010587	Crnkl1	99	98.690	ENSFCAG00000000714	CRNKL1	100	98.690	Felis_catus
ENSRNOG00000010587	Crnkl1	97	91.518	ENSFALG00000004611	CRNKL1	100	91.518	Ficedula_albicollis
ENSRNOG00000010587	Crnkl1	99	97.671	ENSFDAG00000000604	CRNKL1	100	97.671	Fukomys_damarensis
ENSRNOG00000010587	Crnkl1	98	86.330	ENSFHEG00000013163	crnkl1	90	85.072	Fundulus_heteroclitus
ENSRNOG00000010587	Crnkl1	97	85.629	ENSGMOG00000007609	crnkl1	94	83.843	Gadus_morhua
ENSRNOG00000010587	Crnkl1	99	93.285	ENSGALG00000008429	CRNKL1	99	93.285	Gallus_gallus
ENSRNOG00000010587	Crnkl1	97	86.787	ENSGAFG00000014249	crnkl1	90	85.109	Gambusia_affinis
ENSRNOG00000010587	Crnkl1	99	84.795	ENSGACG00000011852	crnkl1	91	84.795	Gasterosteus_aculeatus
ENSRNOG00000010587	Crnkl1	95	92.835	ENSGAGG00000021233	CRNKL1	100	92.908	Gopherus_agassizii
ENSRNOG00000010587	Crnkl1	99	96.361	ENSGGOG00000014176	CRNKL1	100	96.361	Gorilla_gorilla
ENSRNOG00000010587	Crnkl1	99	86.026	ENSHBUG00000005246	crnkl1	91	86.026	Haplochromis_burtoni
ENSRNOG00000010587	Crnkl1	99	97.525	ENSHGLG00000010856	CRNKL1	100	97.525	Heterocephalus_glaber_female
ENSRNOG00000010587	Crnkl1	99	97.525	ENSHGLG00100011521	CRNKL1	100	97.525	Heterocephalus_glaber_male
ENSRNOG00000010587	Crnkl1	97	84.408	ENSHCOG00000006420	crnkl1	99	82.533	Hippocampus_comes
ENSRNOG00000010587	Crnkl1	94	87.365	ENSIPUG00000006751	crnkl1	93	85.522	Ictalurus_punctatus
ENSRNOG00000010587	Crnkl1	96	75.639	ENSIPUG00000006836	-	99	74.852	Ictalurus_punctatus
ENSRNOG00000010587	Crnkl1	92	68.603	ENSIPUG00000000315	-	100	69.811	Ictalurus_punctatus
ENSRNOG00000010587	Crnkl1	99	98.690	ENSSTOG00000014747	CRNKL1	100	98.690	Ictidomys_tridecemlineatus
ENSRNOG00000010587	Crnkl1	99	96.728	ENSJJAG00000016926	Crnkl1	100	96.728	Jaculus_jaculus
ENSRNOG00000010587	Crnkl1	99	85.714	ENSKMAG00000003620	crnkl1	87	85.714	Kryptolebias_marmoratus
ENSRNOG00000010587	Crnkl1	97	70.431	ENSLBEG00000003543	crnkl1	92	72.661	Labrus_bergylta
ENSRNOG00000010587	Crnkl1	99	87.848	ENSLACG00000001129	CRNKL1	99	87.848	Latimeria_chalumnae
ENSRNOG00000010587	Crnkl1	96	89.006	ENSLOCG00000016889	crnkl1	95	87.573	Lepisosteus_oculatus
ENSRNOG00000010587	Crnkl1	99	97.965	ENSLAFG00000004512	CRNKL1	100	97.965	Loxodonta_africana
ENSRNOG00000010587	Crnkl1	99	96.361	ENSMFAG00000039893	CRNKL1	100	96.361	Macaca_fascicularis
ENSRNOG00000010587	Crnkl1	99	96.361	ENSMMUG00000007709	CRNKL1	100	96.361	Macaca_mulatta
ENSRNOG00000010587	Crnkl1	99	96.361	ENSMNEG00000037490	CRNKL1	100	96.361	Macaca_nemestrina
ENSRNOG00000010587	Crnkl1	99	96.361	ENSMLEG00000034885	CRNKL1	100	96.361	Mandrillus_leucophaeus
ENSRNOG00000010587	Crnkl1	99	85.590	ENSMAMG00000008757	crnkl1	91	85.590	Mastacembelus_armatus
ENSRNOG00000010587	Crnkl1	99	86.172	ENSMZEG00005022345	crnkl1	91	86.172	Maylandia_zebra
ENSRNOG00000010587	Crnkl1	99	92.566	ENSMGAG00000003452	CRNKL1	94	92.566	Meleagris_gallopavo
ENSRNOG00000010587	Crnkl1	100	98.986	ENSMAUG00000020764	Crnkl1	100	98.986	Mesocricetus_auratus
ENSRNOG00000010587	Crnkl1	99	97.671	ENSMICG00000006048	CRNKL1	100	97.671	Microcebus_murinus
ENSRNOG00000010587	Crnkl1	100	91.026	ENSMOCG00000000681	-	100	91.026	Microtus_ochrogaster
ENSRNOG00000010587	Crnkl1	96	70.420	ENSMOCG00000004179	-	98	69.320	Microtus_ochrogaster
ENSRNOG00000010587	Crnkl1	91	85.261	ENSMMOG00000017601	crnkl1	97	85.261	Mola_mola
ENSRNOG00000010587	Crnkl1	99	91.954	ENSMODG00000005961	-	99	91.954	Monodelphis_domestica
ENSRNOG00000010587	Crnkl1	100	85.942	ENSMODG00000010857	-	100	85.942	Monodelphis_domestica
ENSRNOG00000010587	Crnkl1	99	62.063	ENSMALG00000011211	crnkl1	90	62.428	Monopterus_albus
ENSRNOG00000010587	Crnkl1	100	99.855	MGP_CAROLIEiJ_G0024394	Crnkl1	100	99.855	Mus_caroli
ENSRNOG00000010587	Crnkl1	100	100.000	ENSMUSG00000001767	Crnkl1	100	100.000	Mus_musculus
ENSRNOG00000010587	Crnkl1	100	97.971	MGP_PahariEiJ_G0025838	Crnkl1	100	97.971	Mus_pahari
ENSRNOG00000010587	Crnkl1	100	99.855	MGP_SPRETEiJ_G0025312	Crnkl1	100	99.855	Mus_spretus
ENSRNOG00000010587	Crnkl1	99	98.544	ENSMPUG00000001226	CRNKL1	100	98.544	Mustela_putorius_furo
ENSRNOG00000010587	Crnkl1	99	97.820	ENSMLUG00000016513	CRNKL1	89	97.820	Myotis_lucifugus
ENSRNOG00000010587	Crnkl1	99	96.286	ENSNGAG00000023097	Crnkl1	100	96.286	Nannospalax_galili
ENSRNOG00000010587	Crnkl1	99	86.317	ENSNBRG00000007867	crnkl1	91	86.317	Neolamprologus_brichardi
ENSRNOG00000010587	Crnkl1	99	92.868	ENSNLEG00000009862	CRNKL1	100	92.868	Nomascus_leucogenys
ENSRNOG00000010587	Crnkl1	97	95.075	ENSMEUG00000012167	-	100	95.075	Notamacropus_eugenii
ENSRNOG00000010587	Crnkl1	99	86.047	ENSMEUG00000002361	-	99	86.047	Notamacropus_eugenii
ENSRNOG00000010587	Crnkl1	86	68.147	ENSOPRG00000009242	-	61	68.147	Ochotona_princeps
ENSRNOG00000010587	Crnkl1	99	97.525	ENSODEG00000012175	CRNKL1	100	97.525	Octodon_degus
ENSRNOG00000010587	Crnkl1	99	86.463	ENSONIG00000018728	crnkl1	91	86.463	Oreochromis_niloticus
ENSRNOG00000010587	Crnkl1	99	98.397	ENSOCUG00000015484	CRNKL1	83	98.397	Oryctolagus_cuniculus
ENSRNOG00000010587	Crnkl1	97	85.586	ENSORLG00000017240	crnkl1	96	79.683	Oryzias_latipes
ENSRNOG00000010587	Crnkl1	97	85.736	ENSORLG00020001742	crnkl1	89	85.736	Oryzias_latipes_hni
ENSRNOG00000010587	Crnkl1	97	85.736	ENSORLG00015019564	crnkl1	89	85.736	Oryzias_latipes_hsok
ENSRNOG00000010587	Crnkl1	99	84.672	ENSOMEG00000019895	crnkl1	91	84.672	Oryzias_melastigma
ENSRNOG00000010587	Crnkl1	99	96.652	ENSOGAG00000011544	CRNKL1	100	96.652	Otolemur_garnettii
ENSRNOG00000010587	Crnkl1	99	97.238	ENSOARG00000002150	CRNKL1	90	97.238	Ovis_aries
ENSRNOG00000010587	Crnkl1	99	95.147	ENSPPAG00000027847	CRNKL1	83	95.197	Pan_paniscus
ENSRNOG00000010587	Crnkl1	99	98.690	ENSPPRG00000001955	CRNKL1	100	98.690	Panthera_pardus
ENSRNOG00000010587	Crnkl1	99	98.690	ENSPTIG00000007393	CRNKL1	100	98.690	Panthera_tigris_altaica
ENSRNOG00000010587	Crnkl1	99	96.215	ENSPTRG00000030609	CRNKL1	100	96.215	Pan_troglodytes
ENSRNOG00000010587	Crnkl1	99	96.361	ENSPANG00000017420	CRNKL1	100	96.361	Papio_anubis
ENSRNOG00000010587	Crnkl1	96	83.008	ENSPKIG00000017093	crnkl1	89	82.258	Paramormyrops_kingsleyae
ENSRNOG00000010587	Crnkl1	99	92.826	ENSPSIG00000012705	CRNKL1	99	92.826	Pelodiscus_sinensis
ENSRNOG00000010587	Crnkl1	98	79.765	ENSPMGG00000006263	crnkl1	96	79.381	Periophthalmus_magnuspinnatus
ENSRNOG00000010587	Crnkl1	100	99.130	ENSPEMG00000000073	-	99	99.130	Peromyscus_maniculatus_bairdii
ENSRNOG00000010587	Crnkl1	99	81.884	ENSPMAG00000002250	crnkl1	99	81.884	Petromyzon_marinus
ENSRNOG00000010587	Crnkl1	99	94.469	ENSPCIG00000025825	CRNKL1	96	94.469	Phascolarctos_cinereus
ENSRNOG00000010587	Crnkl1	97	86.637	ENSPFOG00000005102	crnkl1	93	84.638	Poecilia_formosa
ENSRNOG00000010587	Crnkl1	97	86.637	ENSPLAG00000007288	crnkl1	90	84.515	Poecilia_latipinna
ENSRNOG00000010587	Crnkl1	97	86.787	ENSPMEG00000008865	crnkl1	94	84.783	Poecilia_mexicana
ENSRNOG00000010587	Crnkl1	97	86.336	ENSPREG00000012615	crnkl1	92	84.279	Poecilia_reticulata
ENSRNOG00000010587	Crnkl1	99	96.361	ENSPPYG00000010747	CRNKL1	81	96.361	Pongo_abelii
ENSRNOG00000010587	Crnkl1	99	92.059	ENSPCAG00000003296	CRNKL1	85	92.140	Procavia_capensis
ENSRNOG00000010587	Crnkl1	99	96.361	ENSPCOG00000017608	CRNKL1	83	96.361	Propithecus_coquereli
ENSRNOG00000010587	Crnkl1	99	97.962	ENSPVAG00000006207	CRNKL1	83	97.962	Pteropus_vampyrus
ENSRNOG00000010587	Crnkl1	99	86.026	ENSPNYG00000001977	crnkl1	91	86.026	Pundamilia_nyererei
ENSRNOG00000010587	Crnkl1	97	88.507	ENSPNAG00000001507	crnkl1	98	83.721	Pygocentrus_nattereri
ENSRNOG00000010587	Crnkl1	99	96.215	ENSRBIG00000031770	CRNKL1	100	96.215	Rhinopithecus_bieti
ENSRNOG00000010587	Crnkl1	99	96.070	ENSRROG00000040450	CRNKL1	100	96.070	Rhinopithecus_roxellana
ENSRNOG00000010587	Crnkl1	94	37.536	YLR117C	CLF1	99	37.627	Saccharomyces_cerevisiae
ENSRNOG00000010587	Crnkl1	99	96.215	ENSSBOG00000029672	CRNKL1	100	96.215	Saimiri_boliviensis_boliviensis
ENSRNOG00000010587	Crnkl1	95	74.355	ENSSHAG00000011199	CRNKL1	99	74.355	Sarcophilus_harrisii
ENSRNOG00000010587	Crnkl1	96	87.764	ENSSFOG00015000946	crnkl1	89	86.111	Scleropages_formosus
ENSRNOG00000010587	Crnkl1	97	86.398	ENSSMAG00000007933	crnkl1	87	86.398	Scophthalmus_maximus
ENSRNOG00000010587	Crnkl1	99	79.330	ENSSDUG00000012625	crnkl1	88	79.330	Seriola_dumerili
ENSRNOG00000010587	Crnkl1	99	85.860	ENSSLDG00000021413	crnkl1	89	85.860	Seriola_lalandi_dorsalis
ENSRNOG00000010587	Crnkl1	99	97.234	ENSSARG00000006443	CRNKL1	82	97.234	Sorex_araneus
ENSRNOG00000010587	Crnkl1	99	93.119	ENSSPUG00000005254	CRNKL1	99	93.119	Sphenodon_punctatus
ENSRNOG00000010587	Crnkl1	99	85.631	ENSSPAG00000016150	crnkl1	89	85.631	Stegastes_partitus
ENSRNOG00000010587	Crnkl1	99	98.256	ENSSSCG00000038587	CRNKL1	99	98.256	Sus_scrofa
ENSRNOG00000010587	Crnkl1	99	91.983	ENSTGUG00000007645	CRNKL1	98	91.983	Taeniopygia_guttata
ENSRNOG00000010587	Crnkl1	97	80.838	ENSTRUG00000015417	crnkl1	90	79.971	Takifugu_rubripes
ENSRNOG00000010587	Crnkl1	97	85.007	ENSTNIG00000010710	crnkl1	99	83.673	Tetraodon_nigroviridis
ENSRNOG00000010587	Crnkl1	92	96.519	ENSTBEG00000001304	CRNKL1	82	96.519	Tupaia_belangeri
ENSRNOG00000010587	Crnkl1	91	93.920	ENSTTRG00000000484	CRNKL1	81	93.987	Tursiops_truncatus
ENSRNOG00000010587	Crnkl1	99	98.690	ENSUAMG00000018586	CRNKL1	100	98.690	Ursus_americanus
ENSRNOG00000010587	Crnkl1	99	98.690	ENSUMAG00000024957	CRNKL1	100	98.690	Ursus_maritimus
ENSRNOG00000010587	Crnkl1	99	98.399	ENSVVUG00000012559	CRNKL1	82	98.399	Vulpes_vulpes
ENSRNOG00000010587	Crnkl1	99	90.684	ENSXETG00000009698	crnkl1	99	90.684	Xenopus_tropicalis
ENSRNOG00000010587	Crnkl1	97	85.907	ENSXCOG00000000824	crnkl1	91	84.187	Xiphophorus_couchianus
ENSRNOG00000010587	Crnkl1	97	86.787	ENSXMAG00000006896	crnkl1	91	85.044	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005681	spliceosomal complex	-	ISS	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISS	Component