EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000010919 (Gene tree)
Gene ID: 680915
Gene Symbol: Mbd4
Alias: LOC680915
Full Name: methyl-CpG binding domain 4 DNA glycosylase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10109 bases
Position: chr4:147746186-147756294
Accession: 1585874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000014537	MBD	PF01429.19	3.5e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000014537	-	1701	XM_001059437	ENSRNOP00000014537	566 (aa)	XP_001059437	D4A9W8

Gene Model

Click here to download ENSRNOG00000010919's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000010919's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000010919	Mbd4	100	66.436	ENSG00000129071	MBD4	98	81.250	Homo_sapiens
ENSRNOG00000010919	Mbd4	100	65.739	ENSAMEG00000004562	MBD4	99	65.338	Ailuropoda_melanoleuca
ENSRNOG00000010919	Mbd4	53	61.475	ENSAOCG00000001157	mbd4	62	61.475	Amphiprion_ocellaris
ENSRNOG00000010919	Mbd4	53	61.224	ENSAPEG00000016131	mbd4	63	61.224	Amphiprion_percula
ENSRNOG00000010919	Mbd4	100	61.955	ENSBTAG00000021645	MBD4	100	61.780	Bos_taurus
ENSRNOG00000010919	Mbd4	100	64.757	ENSCJAG00000017293	MBD4	99	64.757	Callithrix_jacchus
ENSRNOG00000010919	Mbd4	100	66.724	ENSCAFG00000004867	MBD4	99	66.724	Canis_familiaris
ENSRNOG00000010919	Mbd4	100	66.724	ENSCAFG00020007082	MBD4	99	66.724	Canis_lupus_dingo
ENSRNOG00000010919	Mbd4	100	62.304	ENSCHIG00000009760	MBD4	100	61.313	Capra_hircus
ENSRNOG00000010919	Mbd4	100	65.744	ENSCCAG00000029796	MBD4	99	65.744	Cebus_capucinus
ENSRNOG00000010919	Mbd4	100	66.435	ENSCATG00000035211	MBD4	99	66.435	Cercocebus_atys
ENSRNOG00000010919	Mbd4	99	64.675	ENSCLAG00000008974	MBD4	99	64.675	Chinchilla_lanigera
ENSRNOG00000010919	Mbd4	100	66.667	ENSCSAG00000009037	MBD4	99	66.667	Chlorocebus_sabaeus
ENSRNOG00000010919	Mbd4	95	47.295	ENSCPBG00000014704	MBD4	99	47.295	Chrysemys_picta_bellii
ENSRNOG00000010919	Mbd4	100	66.957	ENSCANG00000007120	MBD4	99	66.957	Colobus_angolensis_palliatus
ENSRNOG00000010919	Mbd4	100	76.842	ENSCGRG00001003507	Mbd4	100	77.193	Cricetulus_griseus_chok1gshd
ENSRNOG00000010919	Mbd4	100	76.842	ENSCGRG00000010974	Mbd4	100	77.193	Cricetulus_griseus_crigri
ENSRNOG00000010919	Mbd4	100	65.858	ENSDNOG00000049619	MBD4	100	65.858	Dasypus_novemcinctus
ENSRNOG00000010919	Mbd4	81	54.978	ENSDORG00000000902	-	98	54.717	Dipodomys_ordii
ENSRNOG00000010919	Mbd4	100	68.815	ENSEASG00005014800	MBD4	100	68.815	Equus_asinus_asinus
ENSRNOG00000010919	Mbd4	100	68.641	ENSECAG00000022106	MBD4	100	68.641	Equus_caballus
ENSRNOG00000010919	Mbd4	89	60.465	ENSEEUG00000011459	MBD4	95	60.465	Erinaceus_europaeus
ENSRNOG00000010919	Mbd4	100	65.799	ENSFCAG00000000083	MBD4	99	65.799	Felis_catus
ENSRNOG00000010919	Mbd4	83	45.549	ENSFALG00000013663	MBD4	50	81.768	Ficedula_albicollis
ENSRNOG00000010919	Mbd4	86	41.386	ENSGMOG00000013830	mbd4	100	42.315	Gadus_morhua
ENSRNOG00000010919	Mbd4	60	45.106	ENSGACG00000001970	-	77	45.106	Gasterosteus_aculeatus
ENSRNOG00000010919	Mbd4	93	46.073	ENSGAGG00000018644	MBD4	96	46.975	Gopherus_agassizii
ENSRNOG00000010919	Mbd4	100	65.630	ENSGGOG00000010698	MBD4	99	65.630	Gorilla_gorilla
ENSRNOG00000010919	Mbd4	96	65.343	ENSHGLG00000009034	MBD4	97	65.343	Heterocephalus_glaber_female
ENSRNOG00000010919	Mbd4	96	65.343	ENSHGLG00100000135	MBD4	97	65.343	Heterocephalus_glaber_male
ENSRNOG00000010919	Mbd4	100	64.696	ENSSTOG00000020663	MBD4	100	64.696	Ictidomys_tridecemlineatus
ENSRNOG00000010919	Mbd4	99	64.421	ENSLAFG00000010609	MBD4	99	64.421	Loxodonta_africana
ENSRNOG00000010919	Mbd4	99	66.725	ENSMFAG00000002266	MBD4	99	66.725	Macaca_fascicularis
ENSRNOG00000010919	Mbd4	99	66.205	ENSMMUG00000012723	MBD4	99	66.205	Macaca_mulatta
ENSRNOG00000010919	Mbd4	96	65.455	ENSMNEG00000029752	MBD4	99	65.455	Macaca_nemestrina
ENSRNOG00000010919	Mbd4	100	66.146	ENSMLEG00000024859	MBD4	99	66.146	Mandrillus_leucophaeus
ENSRNOG00000010919	Mbd4	100	67.422	ENSMICG00000008022	MBD4	99	67.247	Microcebus_murinus
ENSRNOG00000010919	Mbd4	68	61.069	ENSMOCG00000002466	-	98	60.814	Microtus_ochrogaster
ENSRNOG00000010919	Mbd4	87	57.339	ENSMODG00000006399	-	99	57.339	Monodelphis_domestica
ENSRNOG00000010919	Mbd4	100	82.777	MGP_CAROLIEiJ_G0028760	Mbd4	100	82.777	Mus_caroli
ENSRNOG00000010919	Mbd4	100	81.898	ENSMUSG00000030322	Mbd4	100	81.898	Mus_musculus
ENSRNOG00000010919	Mbd4	100	82.837	MGP_PahariEiJ_G0022511	-	100	82.837	Mus_pahari
ENSRNOG00000010919	Mbd4	100	81.019	MGP_SPRETEiJ_G0029788	Mbd4	100	81.019	Mus_spretus
ENSRNOG00000010919	Mbd4	100	65.679	ENSMPUG00000017195	MBD4	99	65.331	Mustela_putorius_furo
ENSRNOG00000010919	Mbd4	95	68.864	ENSMLUG00000014766	MBD4	99	68.681	Myotis_lucifugus
ENSRNOG00000010919	Mbd4	100	66.146	ENSNLEG00000005337	MBD4	99	66.146	Nomascus_leucogenys
ENSRNOG00000010919	Mbd4	100	59.272	ENSOPRG00000000473	MBD4	99	59.272	Ochotona_princeps
ENSRNOG00000010919	Mbd4	86	43.813	ENSONIG00000017212	mbd4	100	43.813	Oreochromis_niloticus
ENSRNOG00000010919	Mbd4	68	44.750	ENSOANG00000004589	-	89	44.750	Ornithorhynchus_anatinus
ENSRNOG00000010919	Mbd4	100	56.822	ENSOCUG00000013006	MBD4	99	56.822	Oryctolagus_cuniculus
ENSRNOG00000010919	Mbd4	52	63.675	ENSORLG00000011049	mbd4	64	63.675	Oryzias_latipes
ENSRNOG00000010919	Mbd4	55	61.600	ENSORLG00020020013	mbd4	70	61.600	Oryzias_latipes_hni
ENSRNOG00000010919	Mbd4	52	63.675	ENSORLG00015015342	mbd4	64	63.675	Oryzias_latipes_hsok
ENSRNOG00000010919	Mbd4	87	44.016	ENSOMEG00000008819	mbd4	64	62.295	Oryzias_melastigma
ENSRNOG00000010919	Mbd4	100	63.194	ENSOGAG00000010236	MBD4	100	63.194	Otolemur_garnettii
ENSRNOG00000010919	Mbd4	100	62.653	ENSOARG00000014699	MBD4	100	61.658	Ovis_aries
ENSRNOG00000010919	Mbd4	100	66.031	ENSPPAG00000036528	MBD4	99	66.031	Pan_paniscus
ENSRNOG00000010919	Mbd4	100	65.739	ENSPPRG00000016480	MBD4	99	65.739	Panthera_pardus
ENSRNOG00000010919	Mbd4	100	66.090	ENSPTRG00000015377	MBD4	99	66.090	Pan_troglodytes
ENSRNOG00000010919	Mbd4	100	66.493	ENSPANG00000015047	MBD4	99	66.493	Papio_anubis
ENSRNOG00000010919	Mbd4	95	46.564	ENSPSIG00000007892	MBD4	96	47.079	Pelodiscus_sinensis
ENSRNOG00000010919	Mbd4	94	71.614	ENSPEMG00000006226	Mbd4	99	71.985	Peromyscus_maniculatus_bairdii
ENSRNOG00000010919	Mbd4	90	55.133	ENSPCIG00000002276	-	98	55.133	Phascolarctos_cinereus
ENSRNOG00000010919	Mbd4	100	65.972	ENSPPYG00000013417	MBD4	99	65.972	Pongo_abelii
ENSRNOG00000010919	Mbd4	96	59.239	ENSPCAG00000012915	MBD4	99	59.783	Procavia_capensis
ENSRNOG00000010919	Mbd4	100	67.826	ENSPVAG00000005238	MBD4	99	67.826	Pteropus_vampyrus
ENSRNOG00000010919	Mbd4	100	66.609	ENSRBIG00000027722	MBD4	99	66.609	Rhinopithecus_bieti
ENSRNOG00000010919	Mbd4	100	66.609	ENSRROG00000029136	MBD4	99	66.609	Rhinopithecus_roxellana
ENSRNOG00000010919	Mbd4	100	65.043	ENSSBOG00000016810	MBD4	99	65.043	Saimiri_boliviensis_boliviensis
ENSRNOG00000010919	Mbd4	94	54.495	ENSSHAG00000012953	MBD4	94	54.495	Sarcophilus_harrisii
ENSRNOG00000010919	Mbd4	54	64.730	ENSSDUG00000001365	mbd4	63	64.730	Seriola_dumerili
ENSRNOG00000010919	Mbd4	82	55.745	ENSSARG00000004496	-	80	55.745	Sorex_araneus
ENSRNOG00000010919	Mbd4	93	46.416	ENSSPUG00000017344	MBD4	99	46.416	Sphenodon_punctatus
ENSRNOG00000010919	Mbd4	100	66.667	ENSSSCG00000033303	MBD4	100	66.667	Sus_scrofa
ENSRNOG00000010919	Mbd4	86	62.385	ENSTBEG00000003041	-	85	62.385	Tupaia_belangeri
ENSRNOG00000010919	Mbd4	95	68.190	ENSTTRG00000011265	MBD4	98	68.373	Tursiops_truncatus
ENSRNOG00000010919	Mbd4	88	67.729	ENSUAMG00000000814	MBD4	100	67.729	Ursus_americanus
ENSRNOG00000010919	Mbd4	100	65.391	ENSUMAG00000017542	MBD4	100	65.391	Ursus_maritimus
ENSRNOG00000010919	Mbd4	65	64.103	ENSVPAG00000004040	-	67	64.103	Vicugna_pacos
ENSRNOG00000010919	Mbd4	100	66.378	ENSVVUG00000014222	MBD4	99	66.378	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000785	chromatin	21873635.	IBA	Component
GO:0000785	chromatin	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0007095	mitotic G2 DNA damage checkpoint	-	ISO	Process
GO:0008263	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	-	IEA	Function
GO:0008263	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	-	ISO	Function
GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	-	ISO	Process
GO:0009314	response to radiation	21873635.	IBA	Process
GO:0009314	response to radiation	-	ISO	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0032355	response to estradiol	22109888.	IEP	Process